Miyakogusa Predicted Gene

Lj2g3v1984090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984090.1 Non Characterized Hit- tr|I3SVC9|I3SVC9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.29,0,metallochaperone-like domain,TRASH;
Ribosomal_L24e,Ribosomal protein L24e-related; no
description,Ri,CUFF.38188.1
         (118 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g103320.2 | 60S ribosomal protein L24-2 | HC | chr7:417846...   233   3e-62
Medtr7g103320.1 | 60S ribosomal protein L24-2 | HC | chr7:417846...   233   3e-62
Medtr7g103320.3 | 60S ribosomal protein L24-2 | HC | chr7:417846...   233   3e-62
Medtr1g061670.1 | 60S ribosomal protein L24-2 | HC | chr1:269377...   233   4e-62
Medtr4g104930.1 | 60S ribosomal protein L24-2 | HC | chr4:434739...    80   6e-16
Medtr4g055270.1 | ribosome biogenesis RLP24-like protein | HC | ...    74   2e-14
Medtr2g084925.1 | ribosome biogenesis RLP24-like protein | HC | ...    64   2e-11
Medtr5g049460.1 | hypothetical protein | LC | chr5:21672622-2167...    47   5e-06
Medtr6g047410.1 | hypothetical protein | LC | chr6:17046895-1704...    47   5e-06
Medtr6g052660.1 | hypothetical protein | LC | chr6:18831042-1883...    46   9e-06
Medtr6g049080.1 | hypothetical protein | LC | chr6:17783673-1778...    46   1e-05
Medtr0752s0020.1 | hypothetical protein | LC | scaffold0752:6130...    46   1e-05

>Medtr7g103320.2 | 60S ribosomal protein L24-2 | HC |
           chr7:41784638-41791034 | 20130731
          Length = 163

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/118 (94%), Positives = 117/118 (99%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHN+LKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 118
           HKKDIAQEA +K+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKER
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKER 118


>Medtr7g103320.1 | 60S ribosomal protein L24-2 | HC |
           chr7:41784638-41791010 | 20130731
          Length = 163

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/118 (94%), Positives = 117/118 (99%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHN+LKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 118
           HKKDIAQEA +K+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKER
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKER 118


>Medtr7g103320.3 | 60S ribosomal protein L24-2 | HC |
           chr7:41784600-41786598 | 20130731
          Length = 163

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/118 (94%), Positives = 117/118 (99%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHN+LKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 118
           HKKDIAQEA +K+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKER
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKER 118


>Medtr1g061670.1 | 60S ribosomal protein L24-2 | HC |
           chr1:26937773-26935483 | 20130731
          Length = 163

 Score =  233 bits (593), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/118 (93%), Positives = 117/118 (99%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHN+LKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 118
           HKKDIAQEA +K+RR+TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKER
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKER 118


>Medtr4g104930.1 | 60S ribosomal protein L24-2 | HC |
          chr4:43473926-43474255 | 20130731
          Length = 65

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 46/54 (85%), Gaps = 1/54 (1%)

Query: 43 HNRLKPSKLTWTAMFRKQHKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKR 96
          H +++ SK TWTAM+RKQHK DIAQE   K+ R+TKKPYSRSIVGATLE+IQK+
Sbjct: 13 HQQVEASKFTWTAMYRKQHK-DIAQEVVAKRHRATKKPYSRSIVGATLELIQKK 65


>Medtr4g055270.1 | ribosome biogenesis RLP24-like protein | HC |
          chr4:20110107-20107324 | 20130731
          Length = 162

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 3  LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHK 62
          ++ E C F  + +YPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  +R+ H 
Sbjct: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHG 60

Query: 63 KDIAQEAARKKRRSTKKP--YSRSIVGATLEVIQK 95
          KD+ Q++  +  R   +P  Y R++    L+ I K
Sbjct: 61 KDMTQDSTFEFERKRNRPERYDRNLTEEVLKAIPK 95


>Medtr2g084925.1 | ribosome biogenesis RLP24-like protein | HC |
          chr2:36043720-36045454 | 20130731
          Length = 161

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 3  LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHK 62
          ++ E C F  + +YPG GI+F+R+ +++F F  SKC + F  +  P K+ WT  +R+ H 
Sbjct: 1  MRLEKCWFCSSTVYPGHGIQFVRNVAKIFRFCRSKCHKNFEMKRNPRKVKWTKAYRRVHV 60

Query: 63 KDIAQEAARKKRRSTKKP--YSRSIVGATLEVI 93
          K + Q++  +  R   +P  Y R +    L+ I
Sbjct: 61 KAMTQDSTFECERKRNRPERYDRILNENVLKAI 93


>Medtr5g049460.1 | hypothetical protein | LC |
           chr5:21672622-21674097 | 20130731
          Length = 491

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 70  ARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALRE 114
           A KK ++ K   S +   A+ EVIQK+R +KPEVRDAAREAALRE
Sbjct: 378 APKKAKTVKAAGSTASECASDEVIQKKRDKKPEVRDAAREAALRE 422


>Medtr6g047410.1 | hypothetical protein | LC |
           chr6:17046895-17043856 | 20130731
          Length = 952

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 57  FRKQHKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALRE 114
           +++    D   EAA K +++       S V  + EVIQK+R ++P+VRDAAREAALRE
Sbjct: 397 YKRSKAADKDGEAAPKSKKAKTDKTEGSSVSTSEEVIQKKRNKEPDVRDAAREAALRE 454


>Medtr6g052660.1 | hypothetical protein | LC |
           chr6:18831042-18833006 | 20130731
          Length = 640

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 68  EAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALRE 114
           EAA K +++       S V  + EVIQK+R ++PEV+DAAREAALRE
Sbjct: 381 EAAPKPKKAKTVKTEGSTVSTSEEVIQKKRNKEPEVQDAAREAALRE 427


>Medtr6g049080.1 | hypothetical protein | LC |
           chr6:17783673-17782408 | 20130731
          Length = 385

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query: 84  SIVGATLEVIQKRRTEKPEVRDAAREAALRE 114
           S + A+ EVIQK+R +KPEVRD AREAALRE
Sbjct: 349 STISASDEVIQKKRNKKPEVRDVAREAALRE 379


>Medtr0752s0020.1 | hypothetical protein | LC |
           scaffold0752:6130-4139 | 20130731
          Length = 620

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 62  KKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALRE 114
           K D++  A + KR  T K    S   A+ EVIQK+R  +PEVRDAAREAALRE
Sbjct: 326 KDDVS--APKPKRAKTAKAEG-STASASDEVIQKKRNREPEVRDAAREAALRE 375