Miyakogusa Predicted Gene

Lj2g3v1968210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1968210.1 tr|C1FEK9|C1FEK9_MICSR H+-or Na+-translocating
f-type, v-type and A-type ATPase superfamily
OS=Micro,42.99,1e-18,SUBFAMILY NOT NAMED,NULL; VACUOLAR ATP SYNTHASE
SUBUNIT AC39,ATPase, V0 complex, subunit D; vATP-syn,gene.g42467.t1.1
         (233 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g009590.1 | vacuolar H+ ATPase V0 sector, subunit D | HC |...   209   2e-54
Medtr7g009520.1 | ATP synthase (C/ac39) subunit | LC | chr7:2104...   197   9e-51
Medtr7g009550.1 | vacuolar H+ ATPase V0 sector, subunit D | HC |...   103   2e-22
Medtr7g009575.1 | V-type proton ATPase subunit d2 | HC | chr7:21...    52   3e-07
Medtr7g009485.1 | vacuolar H+ ATPase V0 sector, subunit D | HC |...    51   7e-07

>Medtr7g009590.1 | vacuolar H+ ATPase V0 sector, subunit D | HC |
           chr7:2145872-2140833 | 20130731
          Length = 351

 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/112 (87%), Positives = 101/112 (90%)

Query: 122 FHPNFGLLYPYGHEELAVCEDVDQVYAVMEKYPPYQSIFAKLSYGESQMPDKAFYEEEAK 181
            + NFGL YPYGHEELAVCED+DQV AVMEKYPPYQSIFAKLSYGESQM DKAFYEEE K
Sbjct: 240 LYSNFGLFYPYGHEELAVCEDIDQVRAVMEKYPPYQSIFAKLSYGESQMLDKAFYEEEVK 299

Query: 182 RLCLVFEQQFQYAVFFEYMRLGKQEIRNLMWISECVAQNQKSRVHDSVVFIF 233
           R CL FEQQF YAVFF YMRL +QEIRNLMWISECVAQNQKSRVHDSVVFIF
Sbjct: 300 RHCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF 351


>Medtr7g009520.1 | ATP synthase (C/ac39) subunit | LC |
           chr7:2104490-2101564 | 20130731
          Length = 444

 Score =  197 bits (500), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 99/112 (88%), Gaps = 1/112 (0%)

Query: 122 FHPNFGLLYPYGHEELAVCEDVDQVYAVMEKYPPYQSIFAKLSYGESQMPDKAFYEEEAK 181
            + NFGL Y YGHEELAVCED+DQV AVMEKYP +QSIFAKLSYGESQM DKAFYEEE K
Sbjct: 334 LYSNFGLFYSYGHEELAVCEDIDQVRAVMEKYP-HQSIFAKLSYGESQMLDKAFYEEEVK 392

Query: 182 RLCLVFEQQFQYAVFFEYMRLGKQEIRNLMWISECVAQNQKSRVHDSVVFIF 233
           R CL FEQQF YAVFF YMRL +QEIRNLMWISECVAQNQKSRVHDSVVFIF
Sbjct: 393 RHCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF 444


>Medtr7g009550.1 | vacuolar H+ ATPase V0 sector, subunit D | HC |
           chr7:2118219-2116868 | 20130731
          Length = 160

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 53/64 (82%)

Query: 170 MPDKAFYEEEAKRLCLVFEQQFQYAVFFEYMRLGKQEIRNLMWISECVAQNQKSRVHDSV 229
           +  K  YEEE K+ CL FEQQF Y VFF YMRL +QEIRNLMWISECVAQ+QKSRVHDSV
Sbjct: 97  LTRKEIYEEEVKKNCLAFEQQFHYVVFFAYMRLREQEIRNLMWISECVAQHQKSRVHDSV 156

Query: 230 VFIF 233
           VFIF
Sbjct: 157 VFIF 160


>Medtr7g009575.1 | V-type proton ATPase subunit d2 | HC |
           chr7:2128716-2128199 | 20130731
          Length = 71

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 112 SHVKEEGNFHFHPNFGLLYPYGHEELAVCEDVDQV 146
           + + E+     + NFGL YPYGHEELAVCED+DQ+
Sbjct: 37  TELTEDDRRKLYSNFGLFYPYGHEELAVCEDIDQL 71


>Medtr7g009485.1 | vacuolar H+ ATPase V0 sector, subunit D | HC |
           chr7:2085886-2084244 | 20130731
          Length = 212

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 22/25 (88%)

Query: 122 FHPNFGLLYPYGHEELAVCEDVDQV 146
            + NFGL YPYGHEELAVCED+DQV
Sbjct: 188 LYSNFGLFYPYGHEELAVCEDIDQV 212