Miyakogusa Predicted Gene

Lj2g3v1931930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1931930.1 tr|G7K3X2|G7K3X2_MEDTR Sigma factor sigB
regulation protein rsbQ OS=Medicago truncatula
GN=MTR_2g089,87.78,0,Abhydrolase_6,NULL; SIGMA FACTOR SIGB REGULATION
PROTEIN RSBQ,NULL; ALPHA/BETA HYDROLASE FOLD-CONTAI,CUFF.38077.1
         (288 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g016150.1 | sigma factor sigb regulation rsbq-like protein...   506   e-144
Medtr4g095310.1 | sigma factor sigb regulation rsbq-like protein...   474   e-134
Medtr1g018320.1 | sigma factor sigb regulation rsbq-like protein...   322   3e-88
Medtr3g045440.1 | sigma factor sigb regulation rsbq-like protein...   212   4e-55
Medtr6g086560.1 | sigma factor sigb regulation protein rsbq prot...   207   7e-54
Medtr5g056200.1 | alpha/beta fold hydrolase | HC | chr5:23159941...    54   1e-07
Medtr1239s0010.1 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hyd...    51   1e-06

>Medtr5g016150.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr5:5736714-5740149 | 20130731
          Length = 305

 Score =  506 bits (1303), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 237/270 (87%), Positives = 257/270 (95%)

Query: 1   MGIVEEAHNVKVLGSGTRAIVLAHGFGTDQSLWKHFVPYLTNDFRVILYDNMGAGTTNPE 60
           MGIVEEAHNVKVLG+G R IVLAHGFGTDQS+WKHFVPYL +DFRV+LYDNMGAGTTNPE
Sbjct: 1   MGIVEEAHNVKVLGTGNRYIVLAHGFGTDQSVWKHFVPYLVDDFRVVLYDNMGAGTTNPE 60

Query: 61  YFDFERHSSLEGYAYDLLSILEELRVDSCIFVGHSVSAMIGAVASISRPDLFSKIIMVGA 120
           YFD ERHSSLEGYAYDLL+ILEEL++DSCIFVGHSVSAMIGA+ASI+RPDLF K+IMV +
Sbjct: 61  YFDSERHSSLEGYAYDLLAILEELQIDSCIFVGHSVSAMIGAIASITRPDLFLKLIMVSS 120

Query: 121 SPRYLNDVNYYGGFEQEDLNQLFDAMAANYKAWCLGFAPLAVGGDMESVAVQEFSRTLFN 180
           SPRYLNDVNY+GGFEQEDLNQLF+AMA NYKAWC GFAPLAVGGDM+SVAVQEFSRTLFN
Sbjct: 121 SPRYLNDVNYFGGFEQEDLNQLFNAMAENYKAWCYGFAPLAVGGDMDSVAVQEFSRTLFN 180

Query: 181 MRPDIALTVSRTIFQSDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEV 240
           MRPDIAL VSRTIFQSDMR IL+LVTVPCHIIQA+KDMAVPV+VSE+LHQHLGG SIVEV
Sbjct: 181 MRPDIALIVSRTIFQSDMRQILNLVTVPCHIIQAEKDMAVPVMVSEYLHQHLGGQSIVEV 240

Query: 241 MATDGHLPQLSSPDIVIPVLLKHIHLDIEP 270
           M TDGHLPQLSSPDIVIPVLL+HI L+IEP
Sbjct: 241 MTTDGHLPQLSSPDIVIPVLLRHIQLNIEP 270


>Medtr4g095310.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr4:39713387-39710926 | 20130731
          Length = 270

 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/268 (82%), Positives = 253/268 (94%)

Query: 1   MGIVEEAHNVKVLGSGTRAIVLAHGFGTDQSLWKHFVPYLTNDFRVILYDNMGAGTTNPE 60
           MGIVEEAHNVKVLGSG+R IVLAHGFGTDQS+WKH VP+L ++FRVILYDNMGAGTTNP+
Sbjct: 1   MGIVEEAHNVKVLGSGSRFIVLAHGFGTDQSVWKHLVPHLLDEFRVILYDNMGAGTTNPD 60

Query: 61  YFDFERHSSLEGYAYDLLSILEELRVDSCIFVGHSVSAMIGAVASISRPDLFSKIIMVGA 120
           YFDFER+S+LEGYAYDLL+ILEELRVDSCIFVGHSVSAMIG VASISRPDLF+KII++ A
Sbjct: 61  YFDFERYSTLEGYAYDLLAILEELRVDSCIFVGHSVSAMIGTVASISRPDLFNKIILISA 120

Query: 121 SPRYLNDVNYYGGFEQEDLNQLFDAMAANYKAWCLGFAPLAVGGDMESVAVQEFSRTLFN 180
           SPRYLND +Y+GGFEQEDL+QLFDAMA+NYK+WC GFAP+AVGGDMESVAVQEFSRTLFN
Sbjct: 121 SPRYLNDRDYFGGFEQEDLDQLFDAMASNYKSWCSGFAPMAVGGDMESVAVQEFSRTLFN 180

Query: 181 MRPDIALTVSRTIFQSDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEV 240
           MRPDIAL+V +TIF+SDMR IL +VTVPCHIIQ+ KD+AVPVVV+E+LHQH+G  SIVEV
Sbjct: 181 MRPDIALSVLQTIFKSDMRQILCMVTVPCHIIQSMKDLAVPVVVAEYLHQHVGSESIVEV 240

Query: 241 MATDGHLPQLSSPDIVIPVLLKHIHLDI 268
           M+T+GHLPQLSSPD+VIPV+LKHI  DI
Sbjct: 241 MSTEGHLPQLSSPDVVIPVILKHIRHDI 268


>Medtr1g018320.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr1:5202292-5203901 | 20130731
          Length = 268

 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 197/249 (79%), Gaps = 2/249 (0%)

Query: 6   EAHNVKVLGSGTRAIVLAHGFGTDQSLWKHFVPYLTNDFRVILYDNMGAGTTNPEYFDFE 65
           +A NV+V GSG + IV AHGFGTDQS W+  +PY T  ++VILYD + AG+ NP+YFD+ 
Sbjct: 8   DALNVRVEGSGDKYIVFAHGFGTDQSAWQRVLPYFTRSYKVILYDLVCAGSVNPDYFDYR 67

Query: 66  RHSSLEGYAYDLLSILEELRVDSCIFVGHSVSAMIGAVASISRPDLFSKIIMVGASPRYL 125
           R+++L+ Y  DLL+IL+ L V  C +VGHS+SAMIG +ASI RP+LFSK+I++GASPR+L
Sbjct: 68  RYTTLDAYVDDLLNILDSLHVTRCAYVGHSISAMIGMLASIRRPELFSKLILIGASPRFL 127

Query: 126 ND-VNYYGGFEQEDLNQLFDAMAANYKAWCLGFAPLAVGGDMESVAVQEFSRTLFNMRPD 184
           ND  NY+GGFEQ ++ Q+F AM ANY+AW  GFAPLAVG D+ + AV+EFSRTLFNMRPD
Sbjct: 128 NDGENYHGGFEQGEIEQVFSAMEANYEAWVNGFAPLAVGADVPT-AVREFSRTLFNMRPD 186

Query: 185 IALTVSRTIFQSDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEVMATD 244
           I+L VSRT+F SD+RGIL LV VPC I+Q  +DM+VP  V+ ++ +HLGG S V+ + T+
Sbjct: 187 ISLFVSRTVFNSDLRGILGLVKVPCCIMQTARDMSVPATVATYMKEHLGGKSTVQWLDTE 246

Query: 245 GHLPQLSSP 253
           GHLP LS+P
Sbjct: 247 GHLPHLSAP 255


>Medtr3g045440.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr3:14783516-14781798 | 20130731
          Length = 269

 Score =  212 bits (539), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 163/245 (66%), Gaps = 2/245 (0%)

Query: 9   NVKVLGSGTRAIVLAHGFGTDQSLWKHFVPYLTNDFRVILYDNMGAGT-TNPEYFDFERH 67
           N + +GSG   IVL HGFGTDQS W   VP L  ++ ++L+D   +G  T+   ++  ++
Sbjct: 13  NARTIGSGPETIVLCHGFGTDQSTWNKIVPLLAENYSLVLFDWPFSGAITDKSLYNHAKY 72

Query: 68  SSLEGYAYDLLSILEELRVDSCIFVGHSVSAMIGAVASISRPDLFSKIIMVGASPRYLND 127
           +S E YA +L+++++EL +    FVGHS++AMIG +ASI +P+LF +I+++ ASPRY+N 
Sbjct: 73  NSYEPYADELITLMDELDLKCITFVGHSMAAMIGCIASIKKPELFKRIVLLCASPRYINT 132

Query: 128 VNYYGGFEQEDLNQLFDAMAANYKAWCLGFAPLAVGGDMESVAVQEFSRTLFNMRPDIAL 187
            +Y GGFE+ D+  L   + + Y++W   + P+AV  + ++ +V +F + L  M  ++A+
Sbjct: 133 DDYEGGFERSDIENLISTIESQYESWVSAYGPIAVDPN-DADSVDKFQKCLKRMGGEVAI 191

Query: 188 TVSRTIFQSDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEVMATDGHL 247
           T+++T+F SD R ++  V +PC IIQ+  D+AVP+ +  +L +++ GVS +E +   GH 
Sbjct: 192 TLAKTVFFSDYRDMVEKVVIPCTIIQSSNDVAVPISIGHYLDENIKGVSTLEFIDMTGHC 251

Query: 248 PQLSS 252
           PQL++
Sbjct: 252 PQLTA 256


>Medtr6g086560.1 | sigma factor sigb regulation protein rsbq
           protein, putative | HC | chr6:32152457-32148021 |
           20130731
          Length = 284

 Score =  207 bits (528), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 103/254 (40%), Positives = 159/254 (62%), Gaps = 3/254 (1%)

Query: 9   NVKVLGSGTRAIVLAHGFGTDQSLWKHFVPYLT-NDFRVILYDNMGAGT-TNPEYFDFER 66
           N + LG+GT  IV AHG+GTDQS+W    PY T  ++RV+L+D   +G   +   ++  +
Sbjct: 22  NARTLGTGTETIVFAHGYGTDQSIWDKITPYFTEKNYRVVLFDWPFSGAIKDQNLYNPSK 81

Query: 67  HSSLEGYAYDLLSILEELRVDSCIFVGHSVSAMIGAVASISRPDLFSKIIMVGASPRYLN 126
           +SSL+ +A DL+S+L+++ +    FVGHS+S MI  +ASI RP LF ++I+VGASPRY+N
Sbjct: 82  YSSLDAFADDLISLLDQMELKVVTFVGHSMSGMISCLASIKRPQLFKRLILVGASPRYIN 141

Query: 127 DVNYYGGFEQEDLNQLFDAMAANYKAWCLGFAPLAVGGDMESVAVQEFSRTLFNMRPDIA 186
             +Y GGF   D++ L   + +NY+ W   F+   V  + E  +V +F   L  MR ++ 
Sbjct: 142 TDDYEGGFTSSDIDNLLKNIESNYENWVSYFSTNVVDPNDEP-SVIKFRECLNKMRNEVP 200

Query: 187 LTVSRTIFQSDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEVMATDGH 246
           L++++T+F  D R IL  V  PC IIQ   DM VP  V+ ++ + + G   +EV+ T GH
Sbjct: 201 LSLAKTVFCHDYRDILEKVETPCTIIQTSSDMVVPYSVALYMEKKIKGKVTLEVIDTFGH 260

Query: 247 LPQLSSPDIVIPVL 260
            PQL++P  ++ VL
Sbjct: 261 FPQLTAPLQLVDVL 274


>Medtr5g056200.1 | alpha/beta fold hydrolase | HC |
           chr5:23159941-23166405 | 20130731
          Length = 351

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 6   EAHNVKVLGSGTR--AIVLAHGFGTDQSLWKHFVPYLTNDFRVILYDNMGAGTT---NPE 60
           + +N++   SG    A+VL HGFG +   W+  +P L    RV   D +G G +   NP 
Sbjct: 62  KGYNIRYQYSGNNGPALVLVHGFGANSDHWRKNIPDLAKSHRVYSIDLIGYGYSDKPNPR 121

Query: 61  YFDFERHSSLEGYAYDLLSILEELRVDSCIFVGHSVSAMIGAVASISRPDLFSKIIMVGA 120
               +   + + +A  L     ++  D   F+ +S+  ++G  A+I+ P +   I+++  
Sbjct: 122 QIGDDSFYTFDTWAAQLNEFCLDVVKDEAFFICNSIGGVVGLQAAITEPQICKGILLLNI 181

Query: 121 SPRYL 125
           S R L
Sbjct: 182 SLRML 186


>Medtr1239s0010.1 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
           hydrolase, putative | LC | scaffold1239:34-1801 |
           20130731
          Length = 560

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 14  GSGTRAIVLAHGFGTDQSLWKHF---VPYLTNDFRVILYDNMGAG-TTNPEYFDFERHSS 69
           GSG + +VL HG G   S W +F   +  L+  FRV+  D    G +T PE     R+  
Sbjct: 311 GSGDQVVVLLHGGGPGASSWSNFQRNIGPLSEHFRVLAIDMPHFGKSTKPE----GRYLD 366

Query: 70  LEGYAYDLLSILEELRVDSCIFVGHSVSAMIGAVASISRPDLFSKIIMVGA 120
              YA  + + L+ L +    FVG+S+   +  V S+ RP++  +++++G 
Sbjct: 367 RPWYAEVVGATLDTLNISKAHFVGNSLGGSVSMVLSVERPEIVDRLVLMGT 417