Miyakogusa Predicted Gene

Lj2g3v1925720.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1925720.2 tr|F2EFC3|F2EFC3_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,35.19,0.000000000000002,seg,NULL; coiled-coil,NULL;
LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED,NULL,CUFF.38069.2
         (521 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g022890.1 | Low temperature viability protein, putative | ...   529   e-150

>Medtr4g022890.1 | Low temperature viability protein, putative | HC
           | chr4:7694797-7689371 | 20130731
          Length = 514

 Score =  529 bits (1362), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/524 (55%), Positives = 340/524 (64%), Gaps = 16/524 (3%)

Query: 2   GKKKFIDKRNAATFQLIARDSSDPAFSTSDRVFVRVDNNPLSNDSIFDDAPEDCDD--ND 59
           GKKKFIDK+N+ TF L+ARDS+DP ++ SDRVFVRVDNNPLS DSIF D+P+D D   + 
Sbjct: 3   GKKKFIDKKNSVTFHLMARDSTDPVYTESDRVFVRVDNNPLSADSIFADSPDDPDAEFDT 62

Query: 60  SLNGDEGALPDDVRREILELGFPDDGYNYLDHMREIKNTGGGSAFFNNPKFKLQHVPRDI 119
               D G L D+VR+EILELGFPDDGYNYL H+REIKN+GGGS FF NPKFKL+HV  D+
Sbjct: 63  EYAQDSGILSDEVRKEILELGFPDDGYNYLTHLREIKNSGGGSNFFTNPKFKLEHV-NDV 121

Query: 120 KAYDASRLQISEADKEPEENTIYTVAAKTTSIRVQKAIDPEVAALLDDTDLSRFGSDVED 179
           KAYDASR+++ E D+EPEEN +Y VA+ T ++RVQKA+DPEVAALLDD+D SRFGSDVED
Sbjct: 122 KAYDASRVRVKEVDEEPEENILYNVASSTANVRVQKAVDPEVAALLDDSDASRFGSDVED 181

Query: 180 LEEDFVVQANLXXXXXXXXXXPICNGTKFAEESMISRSENNAQVLQVSAHSRVIDDYGSL 239
           LEEDFVV+ANL           + NG  F EESM +R+ NNA +LQ SA++ V DD G  
Sbjct: 182 LEEDFVVKANLCEDVDDEEEVHVRNGMNFTEESM-NRTLNNAHILQGSAYATVADDCGPS 240

Query: 240 DGVTNNEAGEDCAGDKPRARRLLDEQFDLLERQXXXX-XXXXXXXXXXXXXXXNYQAEDE 298
           DG +N   G   AG+KPR RRLLDEQFDLLERQ                    NYQAEDE
Sbjct: 241 DGGSNGATGVYSAGEKPRPRRLLDEQFDLLERQEYGTDDNSDYGDDYYGDYEENYQAEDE 300

Query: 299 FLAEKLKASLNNHTMDSLEPDDD-TYKVPADLLKKNEAPNSEEQEDFAADLIRRTXXXXX 357
            LAEKLK SL    ++ LE +    YKVPA+          EE++D AAD+IRR      
Sbjct: 301 SLAEKLKLSLGTRKVEDLEHEQKGQYKVPAE---------GEEEKDSAADVIRRCKEYGE 351

Query: 358 XXXXXXXXXXXILVQESSDESEVWDCETIVSTYSNLDNHPGKIEAPGVARKKKLAETMXX 417
                      ++ +ESSDESEVWDCETIVSTY+NLDNHPGKIE P   RKKKL ET+  
Sbjct: 352 KYEVEVEDKDAVIFEESSDESEVWDCETIVSTYTNLDNHPGKIETPWATRKKKLTETVTA 411

Query: 418 XXXXXXXXXXXRGKEKLPVDFLPGAKKPATEKVKGPSNASTEQYKRKQHGLESXXXXXXX 477
                       GK KLPVD LPG +KPA +KVK  +   TEQYKRKQHGLES       
Sbjct: 412 AFSSASPIISLSGKAKLPVD-LPGGRKPAADKVKDATTEKTEQYKRKQHGLESKEEKKER 470

Query: 478 XXXXXXXXXXXXXXXXXXXXLYKGEAHRAQRAAAVSGPSSIHLM 521
                               LYK EA RAQR AA SG SS HLM
Sbjct: 471 KAAVKEERREARRTKKEMKELYKCEASRAQRVAAGSGASSYHLM 514