Miyakogusa Predicted Gene

Lj2g3v1915600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1915600.1 Non Characterized Hit- tr|I3S6W4|I3S6W4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.47,0,seg,NULL;
CH,Calponin homology domain; EB1_C,EB1, C-terminal; no
description,Calponin homology domai,CUFF.38052.1
         (327 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g016520.1 | RP/EB family microtubule-associated protein | ...   469   e-132
Medtr0036s0210.1 | RP/EB family microtubule-associated protein |...   322   3e-88
Medtr4g108330.1 | RP/EB family microtubule-associated protein | ...   310   8e-85
Medtr2072s0010.1 | microtubule-associated protein RP/EB family p...    86   7e-17

>Medtr5g016520.1 | RP/EB family microtubule-associated protein | HC
           | chr5:5934758-5937281 | 20130731
          Length = 333

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/333 (73%), Positives = 274/333 (82%), Gaps = 9/333 (2%)

Query: 1   MATNIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKV 60
           MATNIGIMDAAYFVGRSEIL+WINSTLQLNLSKVEEACSGAVHCQLLD  HPG VPMHKV
Sbjct: 1   MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGTVPMHKV 60

Query: 61  NFDAKNEYDMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG 120
           NFDAKNEY+MIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG
Sbjct: 61  NFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG 120

Query: 121 LQHNYNPRERREVCKGG-KEATRKSAHSQSSNKG-STAQRPP-SSHNSRRNEXXXXXXXX 177
            QH+YNP ERRE+C+GG +E ++KSAHSQ SNKG ST+ RPP SSH +RRN+        
Sbjct: 121 -QHSYNPLERREMCRGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHAN 179

Query: 178 -----XXXXXXXXXXXXXXXXYDEQITELKLAIDSLEKEPDFYFAKLRDIEILCQIPEIE 232
                                YD+QITELKL+IDSLEKE DFYFAKLRDIEILCQ PE+E
Sbjct: 180 PVAAKAAKPAAAAAAASAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVE 239

Query: 233 NSPVVAAMQKILYATDDDGTAVAEAQAMLSAAHEEVERLSPIAEVSEEKSSSETHKRKSI 292
           +S V AA+QKILYATDD+G+ + EAQAML++  +E E LSPIAEVSEEKSSSE  KRK+ 
Sbjct: 240 HSAVFAAIQKILYATDDNGSELEEAQAMLTSGLQEAEPLSPIAEVSEEKSSSENLKRKNF 299

Query: 293 SNLEFDAAGVKNLSPRQRLSDVSDVHCSESPLM 325
           +N E DAAG+ NLSPR+RLSDVS+VH + SPLM
Sbjct: 300 ANPEVDAAGIDNLSPRRRLSDVSNVHHNGSPLM 332


>Medtr0036s0210.1 | RP/EB family microtubule-associated protein | HC
           | scaffold0036:80265-85368 | 20130731
          Length = 274

 Score =  322 bits (825), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 158/270 (58%), Positives = 195/270 (72%), Gaps = 4/270 (1%)

Query: 1   MATNIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKV 60
           MAT+IGIMD+AYFVGR+EIL+WIN  LQLNLS++EEA SGAV CQ+LD+ +PG+VPMHKV
Sbjct: 1   MATSIGIMDSAYFVGRNEILSWINKRLQLNLSRIEEAASGAVQCQMLDMTYPGVVPMHKV 60

Query: 61  NFDAKNEYDMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG 120
           NFDAK+EYDMIQNYKVLQDVFNKLKI KHIEV++LVKGRPLDNLEF+QW+KRYCDSVN G
Sbjct: 61  NFDAKSEYDMIQNYKVLQDVFNKLKIAKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGG 120

Query: 121 LQH-NYNPRERREVCKGGKEATRKSAHSQSSNKGSTAQRPPSSHNSRRNEXXXXXXXXXX 179
           + + NYNP ERR   KGGK+   KS  S  S + +T     S   S  N           
Sbjct: 121 IMNENYNPVERR--IKGGKDRNVKSLRSSKSLQSNTTNNTGSGELS-PNRNSGPKISRSS 177

Query: 180 XXXXXXXXXXXXXXYDEQITELKLAIDSLEKEPDFYFAKLRDIEILCQIPEIENSPVVAA 239
                           +Q+T+LK+++D LEKE DFYF+KLRDIEILCQ  E+EN P+  A
Sbjct: 178 GGSDGTNSSAEIQALSKQVTDLKISVDLLEKERDFYFSKLRDIEILCQTSELENEPISVA 237

Query: 240 MQKILYATDDDGTAVAEAQAMLSAAHEEVE 269
           ++KILYA D   +A+ EAQA ++   ++VE
Sbjct: 238 IKKILYAADAKESALEEAQAYINQTLDDVE 267


>Medtr4g108330.1 | RP/EB family microtubule-associated protein | HC
           | chr4:44937960-44942067 | 20130731
          Length = 290

 Score =  310 bits (795), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 153/268 (57%), Positives = 186/268 (69%), Gaps = 11/268 (4%)

Query: 1   MATNIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKV 60
           MATNIGIMD+AYFVGR+EIL WIN+ LQLNLS++E+A SGAV CQ++DV H G+VPMHKV
Sbjct: 1   MATNIGIMDSAYFVGRNEILNWINNLLQLNLSRIEDAASGAVQCQMMDVTHQGVVPMHKV 60

Query: 61  NFDAKNEYDMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG 120
           NFDAK EYD IQNYKVLQDVFNKLKI KHIEVS+LVKGRPLDNLEF+QW+KRYCDS+N G
Sbjct: 61  NFDAKTEYDKIQNYKVLQDVFNKLKIDKHIEVSRLVKGRPLDNLEFLQWLKRYCDSINGG 120

Query: 121 LQH-NYNPRERREVCKGGKEATRKSAHSQS---SNKGSTAQRPPSSHNSRRNEXXXXXXX 176
           + + NYNP ERR      + + +KS   Q+   +N GS     P       N        
Sbjct: 121 IMNENYNPVERRVKVGKDRSSLKKSKSLQTNIMNNSGSGNTLGP-------NRTSVAKPF 173

Query: 177 XXXXXXXXXXXXXXXXXYDEQITELKLAIDSLEKEPDFYFAKLRDIEILCQIPEIENSPV 236
                              ++IT+LK  +D LEKE DFYFAKLRD+EI+CQ PE+E+ PV
Sbjct: 174 RSSGGAGGDNSSAEIQTLSKEITDLKFTVDRLEKERDFYFAKLRDVEIICQTPEVEDIPV 233

Query: 237 VAAMQKILYATDDDGTAVAEAQAMLSAA 264
             A++KILYATD   +A+ EAQ  L+ A
Sbjct: 234 TVAIKKILYATDAKESALDEAQDYLNQA 261


>Medtr2072s0010.1 | microtubule-associated protein RP/EB family
          protein | HC | scaffold2072:460-212 | 20130731
          Length = 52

 Score = 85.5 bits (210), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 37 ACSGAVHCQLLDVVHPGIVPMHKVNFDAKNEYDMIQNYKVLQDVFNKLKITK 88
          A SGAV  Q+LD+ +PG+VPM+KVNFDAK EYDMIQNYKVLQ  FNKLKI K
Sbjct: 1  AASGAVQFQMLDMTYPGVVPMYKVNFDAKTEYDMIQNYKVLQMRFNKLKIAK 52