Miyakogusa Predicted Gene
- Lj2g3v1904470.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1904470.2 Non Characterized Hit- tr|B8ACT4|B8ACT4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,85.71,0.078,Rer1,Retrieval of early ER protein Rer1; PROTEIN
RER1,Retrieval of early ER protein Rer1,CUFF.38046.2
(191 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g094930.1 | ATRER1A | HC | chr4:39306869-39304054 | 20130731 323 6e-89
Medtr5g016560.1 | ATRER1A | HC | chr5:5950897-5953021 | 20130731 294 4e-80
Medtr5g016560.2 | ATRER1A | HC | chr5:5950897-5952565 | 20130731 278 2e-75
Medtr4g070400.1 | ATRER1A | HC | chr4:26526416-26523268 | 20130731 250 5e-67
Medtr4g070400.2 | ATRER1A | HC | chr4:26526185-26523282 | 20130731 250 5e-67
>Medtr4g094930.1 | ATRER1A | HC | chr4:39306869-39304054 | 20130731
Length = 192
Score = 323 bits (828), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 153/188 (81%), Positives = 172/188 (91%), Gaps = 2/188 (1%)
Query: 6 EVSPETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSYA 65
+ SP AI+RWK S++YQH+LDK+TPHV +RW+GCLVVA +YVLRVY+V+GFY+VSY
Sbjct: 5 DTSPAAAITRWKFEASRRYQHILDKSTPHVSQRWLGCLVVALVYVLRVYIVQGFYVVSYG 64
Query: 66 LGIYILNLLIGFLSPQVDPEVYD--DGPTLPTSGSDEFRPFVRRIPEFKFWYSITKAFCI 123
LGIYILNLLIGFLSPQVDPE+ D +GP+LPTSGSDEFRPFVRR+PEFKFWYSITKAFCI
Sbjct: 65 LGIYILNLLIGFLSPQVDPEILDADNGPSLPTSGSDEFRPFVRRLPEFKFWYSITKAFCI 124
Query: 124 AFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRASA 183
AFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI+HMIKYKYVPFSFGKQRY KRASA
Sbjct: 125 AFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIAHMIKYKYVPFSFGKQRYDRKRASA 184
Query: 184 ESKSLPED 191
ES SL ++
Sbjct: 185 ESTSLSDN 192
>Medtr5g016560.1 | ATRER1A | HC | chr5:5950897-5953021 | 20130731
Length = 208
Score = 294 bits (752), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 149/190 (78%), Positives = 162/190 (85%), Gaps = 4/190 (2%)
Query: 6 EVSP-ETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSY 64
EVSP ETAI + K + QQYQH+LDKTTPHVL RW+G VVA IY+LRVYL+EGFYIV+Y
Sbjct: 19 EVSPAETAILQLKQAIWQQYQHVLDKTTPHVLPRWIGFSVVAFIYILRVYLLEGFYIVTY 78
Query: 65 ALGIYILNLLIGFLSPQVDPEVYD--DGPTLPTSGSDEFRPFVRRIPEFKFWYSITKAFC 122
LGIYILNLLIGFLSPQVDP + D DGPTLP SDEFRPFVRR+PEFKFWYSIT AFC
Sbjct: 79 GLGIYILNLLIGFLSPQVDPAIADAADGPTLPIRASDEFRPFVRRLPEFKFWYSITVAFC 138
Query: 123 IAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRAS 182
IA VMTF SAFD+PVFWPILLFYWVVLF+LTMRRQISHMIKY+YVPF+FGKQ Y KRAS
Sbjct: 139 IAIVMTFSSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFNFGKQHYQRKRAS 198
Query: 183 -AESKSLPED 191
ES SLP D
Sbjct: 199 EEESTSLPVD 208
>Medtr5g016560.2 | ATRER1A | HC | chr5:5950897-5952565 | 20130731
Length = 192
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/172 (80%), Positives = 151/172 (87%), Gaps = 3/172 (1%)
Query: 6 EVSP-ETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSY 64
EVSP ETAI + K + QQYQH+LDKTTPHVL RW+G VVA IY+LRVYL+EGFYIV+Y
Sbjct: 19 EVSPAETAILQLKQAIWQQYQHVLDKTTPHVLPRWIGFSVVAFIYILRVYLLEGFYIVTY 78
Query: 65 ALGIYILNLLIGFLSPQVDPEVYD--DGPTLPTSGSDEFRPFVRRIPEFKFWYSITKAFC 122
LGIYILNLLIGFLSPQVDP + D DGPTLP SDEFRPFVRR+PEFKFWYSIT AFC
Sbjct: 79 GLGIYILNLLIGFLSPQVDPAIADAADGPTLPIRASDEFRPFVRRLPEFKFWYSITVAFC 138
Query: 123 IAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 174
IA VMTF SAFD+PVFWPILLFYWVVLF+LTMRRQISHMIKY+YVPF+FGKQ
Sbjct: 139 IAIVMTFSSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFNFGKQ 190
>Medtr4g070400.1 | ATRER1A | HC | chr4:26526416-26523268 | 20130731
Length = 197
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/177 (68%), Positives = 143/177 (80%), Gaps = 4/177 (2%)
Query: 4 GGEVSPETAIS--RWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYI 61
GG + TA + +W S+ +QH LDK+TPH RW+G V+ASIY LRV+ ++GFYI
Sbjct: 5 GGSSASATAATPPQWWQDFSKLFQHYLDKSTPHSTYRWIGTFVIASIYGLRVFYLQGFYI 64
Query: 62 VSYALGIYILNLLIGFLSPQVDPEV--YDDGPTLPTSGSDEFRPFVRRIPEFKFWYSITK 119
VSY LGIY+LNLLIGFLSP VDPE+ D GP LPT GSDEF+PF+RR+PEFKFWYS TK
Sbjct: 65 VSYGLGIYMLNLLIGFLSPLVDPELEPSDGGPLLPTKGSDEFKPFIRRLPEFKFWYSFTK 124
Query: 120 AFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRY 176
AF IAF+MTFFS FDVPVFWPILL YWVVLF LTMRRQI+HMIKY+Y+PFS GKQ+Y
Sbjct: 125 AFLIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKYRYIPFSLGKQKY 181
>Medtr4g070400.2 | ATRER1A | HC | chr4:26526185-26523282 | 20130731
Length = 197
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/177 (68%), Positives = 143/177 (80%), Gaps = 4/177 (2%)
Query: 4 GGEVSPETAIS--RWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYI 61
GG + TA + +W S+ +QH LDK+TPH RW+G V+ASIY LRV+ ++GFYI
Sbjct: 5 GGSSASATAATPPQWWQDFSKLFQHYLDKSTPHSTYRWIGTFVIASIYGLRVFYLQGFYI 64
Query: 62 VSYALGIYILNLLIGFLSPQVDPEV--YDDGPTLPTSGSDEFRPFVRRIPEFKFWYSITK 119
VSY LGIY+LNLLIGFLSP VDPE+ D GP LPT GSDEF+PF+RR+PEFKFWYS TK
Sbjct: 65 VSYGLGIYMLNLLIGFLSPLVDPELEPSDGGPLLPTKGSDEFKPFIRRLPEFKFWYSFTK 124
Query: 120 AFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRY 176
AF IAF+MTFFS FDVPVFWPILL YWVVLF LTMRRQI+HMIKY+Y+PFS GKQ+Y
Sbjct: 125 AFLIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKYRYIPFSLGKQKY 181