Miyakogusa Predicted Gene
- Lj2g3v1879770.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1879770.1 Non Characterized Hit- tr|I1I7U8|I1I7U8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,34.42,4e-18,coiled-coil,NULL; Remorin_C,Remorin, C-terminal;
seg,NULL,CUFF.38005.1
(324 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g017290.1 | carboxy-terminal region remorin | HC | chr5:63... 310 1e-84
Medtr1g019280.1 | carboxy-terminal region remorin | HC | chr1:57... 130 1e-30
Medtr1g019280.2 | carboxy-terminal region remorin | HC | chr1:57... 130 2e-30
Medtr8g023130.1 | carboxy-terminal region remorin | HC | chr8:82... 55 9e-08
Medtr8g079482.1 | carboxy-terminal region remorin | HC | chr8:34... 53 4e-07
Medtr8g079482.2 | carboxy-terminal region remorin | HC | chr8:34... 53 4e-07
Medtr8g080180.2 | carboxy-terminal region remorin | HC | chr8:34... 52 7e-07
Medtr8g080180.1 | carboxy-terminal region remorin | HC | chr8:34... 52 7e-07
>Medtr5g017290.1 | carboxy-terminal region remorin | HC |
chr5:6300645-6298442 | 20130731
Length = 404
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/303 (62%), Positives = 218/303 (71%), Gaps = 26/303 (8%)
Query: 33 FPLRRQSMVVKNLMMSSPFSTGVLAPDALSLHHYYAAHDTVFSPLYXXXXXXXXNEIQYS 92
PLR +VVKNLMMSSPF+TGVLAPD +SL HYY HD ++ Y +I
Sbjct: 115 IPLR-NGLVVKNLMMSSPFTTGVLAPDIVSLQHYYP-HDNLYGARY---------DIDDD 163
Query: 93 SSELNQNGVALPSVSSAPMWSELLCDPSSPNFQDEKCNGTKNEETEVSPFLRRDQGTQMS 152
SS +N+NGVA S S+AP WSELL DPSSPN DEK +GTKNE+T +SP + D+GTQMS
Sbjct: 164 SSVVNENGVAHTSASNAPSWSELLSDPSSPNSHDEKFDGTKNEDTVMSPMSKIDKGTQMS 223
Query: 153 LPETENDXXXXXXXXXXXXXMNPKNCNSSKLEVRDVQVDNQAPVNKWSKQ-----NHLHD 207
PETEN+ MNPK+C+S KLE++DVQVD QA V KWSK + +
Sbjct: 224 SPETENEDHSSPKSSSPILAMNPKSCHSEKLEIKDVQVDCQANVIKWSKSYASKLSSFNG 283
Query: 208 EDLQRSSKEAQASSLDIAESTLDI--SKFHR-EEAKIIAWESLQKAKAEAAIRKLEMKLE 264
++L++S E AS LDIAE+T D SKF R +EAKIIAWESLQKAKAEAAIRKLEMKLE
Sbjct: 284 KELKKSGTE--ASGLDIAETTSDTSSSKFERDDEAKIIAWESLQKAKAEAAIRKLEMKLE 341
Query: 265 KKRSSSMDKILKKLRRAQMKAEKMRSLTPVQQQGHRVCKTWKVFSFPK----WSPSRCFS 320
KK+SSSMDKIL KLRRAQMKAEKMRSLTPVQQ+ H V KTWKVFSF K WSPS CF+
Sbjct: 342 KKKSSSMDKILNKLRRAQMKAEKMRSLTPVQQEQH-VSKTWKVFSFTKYGKIWSPSSCFA 400
Query: 321 SHA 323
SHA
Sbjct: 401 SHA 403
>Medtr1g019280.1 | carboxy-terminal region remorin | HC |
chr1:5782200-5777571 | 20130731
Length = 620
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 131/220 (59%), Gaps = 22/220 (10%)
Query: 125 QDEKCNGTKNEETEVSPFL-RRDQGTQMSLPETENDXXXXXXXXXXXX------XMNPKN 177
++EK + K+ T VSP + RRD TQMS PE + + ++
Sbjct: 403 REEKFDAFKDAGTNVSPAVSRRDMATQMS-PEGSSCSSPNMMTSFSASIPPTLPVTDLQS 461
Query: 178 CNSSKLEVRDVQVDNQAPVNKWSKQNHL--------HDEDLQRSSKEAQASSLDIAESTL 229
+ SK+++RDVQVD + + +WSK++ + + ++ ++SS +I+E +
Sbjct: 462 ISFSKMDIRDVQVDERVTMTRWSKKHKALFTGRGSENVDSWKKKETSTRSSSWEISERSK 521
Query: 230 DISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSSSMDKILKKLRRAQMKAEKMR 289
+SK REEAKI AWE+LQKAKAEAAI+KLEMKLEKKR+SSMDKI+ KL+ AQ KA++MR
Sbjct: 522 TVSKAKREEAKITAWENLQKAKAEAAIQKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMR 581
Query: 290 SLTPVQQQGHRVCKT-WKVFSFPK----WSPSRCFSSHAL 324
S V Q H+V +T KV SF + S S CF+ HA
Sbjct: 582 SSVSV-DQAHQVARTSHKVMSFRRAGQMGSLSGCFTCHAF 620
>Medtr1g019280.2 | carboxy-terminal region remorin | HC |
chr1:5781751-5777571 | 20130731
Length = 558
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 131/220 (59%), Gaps = 22/220 (10%)
Query: 125 QDEKCNGTKNEETEVSPFL-RRDQGTQMSLPETENDXXXXXXXXXXXX------XMNPKN 177
++EK + K+ T VSP + RRD TQMS PE + + ++
Sbjct: 341 REEKFDAFKDAGTNVSPAVSRRDMATQMS-PEGSSCSSPNMMTSFSASIPPTLPVTDLQS 399
Query: 178 CNSSKLEVRDVQVDNQAPVNKWSKQNHL--------HDEDLQRSSKEAQASSLDIAESTL 229
+ SK+++RDVQVD + + +WSK++ + + ++ ++SS +I+E +
Sbjct: 400 ISFSKMDIRDVQVDERVTMTRWSKKHKALFTGRGSENVDSWKKKETSTRSSSWEISERSK 459
Query: 230 DISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSSSMDKILKKLRRAQMKAEKMR 289
+SK REEAKI AWE+LQKAKAEAAI+KLEMKLEKKR+SSMDKI+ KL+ AQ KA++MR
Sbjct: 460 TVSKAKREEAKITAWENLQKAKAEAAIQKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMR 519
Query: 290 SLTPVQQQGHRVCKT-WKVFSFPK----WSPSRCFSSHAL 324
S V Q H+V +T KV SF + S S CF+ HA
Sbjct: 520 SSVSV-DQAHQVARTSHKVMSFRRAGQMGSLSGCFTCHAF 558
>Medtr8g023130.1 | carboxy-terminal region remorin | HC |
chr8:8275146-8279407 | 20130731
Length = 463
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 233 KFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSSSMDKILKKLRRAQMKAEKMR 289
++ REEAKI AW +LQ AKAEA +KLE+K++K RS+ +K++K++ KAE R
Sbjct: 363 RYQREEAKIQAWINLQNAKAEARSKKLEVKIQKMRSNLEEKLMKRMSVVHRKAEDWR 419
>Medtr8g079482.1 | carboxy-terminal region remorin | HC |
chr8:34063857-34067628 | 20130731
Length = 528
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 207 DEDLQRSSK---EAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKL 263
D D Q + E +A+ + AE + ++ REE +I AWES QKAK EA +R+ E K+
Sbjct: 404 DADTQEQERIEFEKRAALWEEAEKSKHTARLKREEIQIQAWESQQKAKLEAEMRRTEAKV 463
Query: 264 EKKRSSSMDKILKKL---------RRAQMKAEKMRSLTPVQQQGHRVCKTWKV 307
E+ R+ + K++KK+ +RAQ +A K R Q + +T K+
Sbjct: 464 EQMRAQTHAKMVKKIAMARQRSDEKRAQAEARKNREAERTAAQAEYIRQTGKM 516
>Medtr8g079482.2 | carboxy-terminal region remorin | HC |
chr8:34063857-34067628 | 20130731
Length = 438
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 207 DEDLQRSSK---EAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKL 263
D D Q + E +A+ + AE + ++ REE +I AWES QKAK EA +R+ E K+
Sbjct: 314 DADTQEQERIEFEKRAALWEEAEKSKHTARLKREEIQIQAWESQQKAKLEAEMRRTEAKV 373
Query: 264 EKKRSSSMDKILKKL---------RRAQMKAEKMRSLTPVQQQGHRVCKTWKV 307
E+ R+ + K++KK+ +RAQ +A K R Q + +T K+
Sbjct: 374 EQMRAQTHAKMVKKIAMARQRSDEKRAQAEARKNREAERTAAQAEYIRQTGKM 426
>Medtr8g080180.2 | carboxy-terminal region remorin | HC |
chr8:34442403-34445750 | 20130731
Length = 361
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 198 KWSKQNHLHDEDLQRSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIR 257
K ++N + D+ + S E++A + D AE +++F REE KI AWE+ Q KAE ++
Sbjct: 228 KMVEKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREEMKIQAWENHQIRKAEMEMK 287
Query: 258 KLEMKLEKKRSSSMDKILKKLRRAQMKAEKMRSLTPVQQQGHRVCKTWKV---------- 307
K+E+K E+ ++ + +K+ KL + AE+ R+ V+ + + T +V
Sbjct: 288 KMEVKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVKLNDNALRTTERVDYIRRTGHVP 347
Query: 308 --FSFPKWSPSRCF 319
FSF PS C+
Sbjct: 348 SSFSFTFKLPSICW 361
>Medtr8g080180.1 | carboxy-terminal region remorin | HC |
chr8:34442437-34445750 | 20130731
Length = 361
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 198 KWSKQNHLHDEDLQRSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIR 257
K ++N + D+ + S E++A + D AE +++F REE KI AWE+ Q KAE ++
Sbjct: 228 KMVEKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREEMKIQAWENHQIRKAEMEMK 287
Query: 258 KLEMKLEKKRSSSMDKILKKLRRAQMKAEKMRSLTPVQQQGHRVCKTWKV---------- 307
K+E+K E+ ++ + +K+ KL + AE+ R+ V+ + + T +V
Sbjct: 288 KMEVKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVKLNDNALRTTERVDYIRRTGHVP 347
Query: 308 --FSFPKWSPSRCF 319
FSF PS C+
Sbjct: 348 SSFSFTFKLPSICW 361