Miyakogusa Predicted Gene

Lj2g3v1877670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1877670.1 Non Characterized Hit- tr|C6TLU0|C6TLU0_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,65.67,0.000000000002,seg,NULL,
NODE_32179_length_580_cov_87.898277.path2.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g016800.1 | DUF1639 family protein | HC | chr1:4502153-450...    58   3e-09

>Medtr1g016800.1 | DUF1639 family protein | HC |
          chr1:4502153-4508539 | 20130731
          Length = 293

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 40/52 (76%), Gaps = 4/52 (7%)

Query: 15 GGDGGSLLLRASS-DGMRQSGTTSDLVLQWGNRKRLRCMKVQVKDKDDSTGP 65
          GGDG S LL  +S DG RQS +TSDLVLQWGNRKRLRCMKVQV  K DS  P
Sbjct: 28 GGDGSSSLLLRASSDGFRQS-STSDLVLQWGNRKRLRCMKVQV--KQDSLNP 76