Miyakogusa Predicted Gene
- Lj2g3v1876630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1876630.1 Non Characterized Hit- tr|F6HHL2|F6HHL2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,27.27,1e-18,RRM_1,RNA recognition motif domain; RRM,RNA
recognition motif domain; CG3594-PA,NULL; FAMILY NOT NAM,CUFF.37999.1
(369 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 593 e-170
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 585 e-167
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 585 e-167
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 585 e-167
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 134 2e-31
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 2e-31
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 130 2e-30
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 130 2e-30
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 128 9e-30
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 128 9e-30
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 128 9e-30
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 117 2e-26
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 117 2e-26
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 107 2e-23
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 107 2e-23
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 102 8e-22
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 1e-15
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 2e-15
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 2e-15
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 2e-15
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 79 7e-15
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 2e-14
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 2e-14
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 2e-14
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 2e-13
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-12
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 4e-12
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 4e-12
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 4e-12
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 65 7e-11
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 1e-10
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-10
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 64 3e-10
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 62 7e-10
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 62 7e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 7e-09
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 57 2e-08
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 56 5e-08
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 56 7e-08
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 8e-08
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 8e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 9e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 55 9e-08
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 9e-08
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 55 1e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 54 2e-07
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 53 4e-07
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-07
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 51 1e-06
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 51 1e-06
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 51 1e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 593 bits (1530), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/381 (77%), Positives = 318/381 (83%), Gaps = 20/381 (5%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
MEQRKLVVLGIPW+VDT+GLKEYMSK+GELEDCIVMKER+TGRSRGFGYVTF SVDDAK
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITD 120
VLS EH LG+RMLEVKVATPKEEM+AP KKV RIF+ARIPPSVTE TFRSHFEKYGDITD
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITD 120
Query: 121 LYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKPIXXXX 180
LYMPKDQ SK HRGIGFIT+ NA+SVENLM ETHEL GS VVVDRATPKEDD KP
Sbjct: 121 LYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPT---- 176
Query: 181 XXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHL 240
AYNAYIS TRYAALGAPTLYD+PG +YGRGEP R + KKIFVG L
Sbjct: 177 ----GRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRL 232
Query: 241 PQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGH 300
P EA +EDLRQYFGRFG I DVYIPRD KR+GHRGFGFVTFA++GVADRV+ RPHEICGH
Sbjct: 233 PPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRPHEICGH 292
Query: 301 QVAIDSATPLDDAGPSGNFML-NSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVPRGRP- 358
+VAIDSATP+DDA PSGNFM+ NSM+SFGG+GGPVR YGRMYG LDYDDWGYGVP RP
Sbjct: 293 EVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGLDYDDWGYGVPSVRPS 352
Query: 359 ----------PSRADWRYRPY 369
PSRADWRYRPY
Sbjct: 353 RAEYQEQLGRPSRADWRYRPY 373
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 585 bits (1508), Expect = e-167, Method: Compositional matrix adjust.
Identities = 296/405 (73%), Positives = 318/405 (78%), Gaps = 44/405 (10%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
MEQRKLVVLGIPW+VDT+GLKEYMSK+GELEDCIVMKER+TGRSRGFGYVTF SVDDAK
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITD 120
VLS EH LG+RMLEVKVATPKEEM+AP KKV RIF+ARIPPSVTE TFRSHFEKYGDITD
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITD 120
Query: 121 LYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKPIXXXX 180
LYMPKDQ SK HRGIGFIT+ NA+SVENLM ETHEL GS VVVDRATPKEDD KP
Sbjct: 121 LYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPT---- 176
Query: 181 XXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHL 240
AYNAYIS TRYAALGAPTLYD+PG +YGRGEP R + KKIFVG L
Sbjct: 177 ----GRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRL 232
Query: 241 PQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGH 300
P EA +EDLRQYFGRFG I DVYIPRD KR+GHRGFGFVTFA++GVADRV+ RPHEICGH
Sbjct: 233 PPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRPHEICGH 292
Query: 301 QVAIDSATPLDDAGPSGNFML-NSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVPRGRP- 358
+VAIDSATP+DDA PSGNFM+ NSM+SFGG+GGPVR YGRMYG LDYDDWGYGVP RP
Sbjct: 293 EVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGLDYDDWGYGVPSVRPS 352
Query: 359 ----------------------------------PSRADWRYRPY 369
PSRADWRYRPY
Sbjct: 353 RAEYQEQLGRPSRADYQEQIGRPSRADYQEHIGRPSRADWRYRPY 397
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 585 bits (1508), Expect = e-167, Method: Compositional matrix adjust.
Identities = 296/405 (73%), Positives = 318/405 (78%), Gaps = 44/405 (10%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
MEQRKLVVLGIPW+VDT+GLKEYMSK+GELEDCIVMKER+TGRSRGFGYVTF SVDDAK
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITD 120
VLS EH LG+RMLEVKVATPKEEM+AP KKV RIF+ARIPPSVTE TFRSHFEKYGDITD
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITD 120
Query: 121 LYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKPIXXXX 180
LYMPKDQ SK HRGIGFIT+ NA+SVENLM ETHEL GS VVVDRATPKEDD KP
Sbjct: 121 LYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPT---- 176
Query: 181 XXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHL 240
AYNAYIS TRYAALGAPTLYD+PG +YGRGEP R + KKIFVG L
Sbjct: 177 ----GRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRL 232
Query: 241 PQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGH 300
P EA +EDLRQYFGRFG I DVYIPRD KR+GHRGFGFVTFA++GVADRV+ RPHEICGH
Sbjct: 233 PPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRPHEICGH 292
Query: 301 QVAIDSATPLDDAGPSGNFML-NSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVPRGRP- 358
+VAIDSATP+DDA PSGNFM+ NSM+SFGG+GGPVR YGRMYG LDYDDWGYGVP RP
Sbjct: 293 EVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGLDYDDWGYGVPSVRPS 352
Query: 359 ----------------------------------PSRADWRYRPY 369
PSRADWRYRPY
Sbjct: 353 RAEYQEQLGRPSRADYQEQIGRPSRADYQEHIGRPSRADWRYRPY 397
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 585 bits (1508), Expect = e-167, Method: Compositional matrix adjust.
Identities = 296/405 (73%), Positives = 318/405 (78%), Gaps = 44/405 (10%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
MEQRKLVVLGIPW+VDT+GLKEYMSK+GELEDCIVMKER+TGRSRGFGYVTF SVDDAK
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITD 120
VLS EH LG+RMLEVKVATPKEEM+AP KKV RIF+ARIPPSVTE TFRSHFEKYGDITD
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITD 120
Query: 121 LYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKPIXXXX 180
LYMPKDQ SK HRGIGFIT+ NA+SVENLM ETHEL GS VVVDRATPKEDD KP
Sbjct: 121 LYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPT---- 176
Query: 181 XXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHL 240
AYNAYIS TRYAALGAPTLYD+PG +YGRGEP R + KKIFVG L
Sbjct: 177 ----GRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRL 232
Query: 241 PQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGH 300
P EA +EDLRQYFGRFG I DVYIPRD KR+GHRGFGFVTFA++GVADRV+ RPHEICGH
Sbjct: 233 PPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRPHEICGH 292
Query: 301 QVAIDSATPLDDAGPSGNFML-NSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVPRGRP- 358
+VAIDSATP+DDA PSGNFM+ NSM+SFGG+GGPVR YGRMYG LDYDDWGYGVP RP
Sbjct: 293 EVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGLDYDDWGYGVPSVRPS 352
Query: 359 ----------------------------------PSRADWRYRPY 369
PSRADWRYRPY
Sbjct: 353 RAEYQEQLGRPSRADYQEQIGRPSRADYQEHIGRPSRADWRYRPY 397
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 108/179 (60%), Gaps = 13/179 (7%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + GI W+ + + L+EY S +GE+++ ++MK+R TGR+RGFG+V F A V+
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVK------------KVNRIFIARIPPSVTEATFRSHF 112
+HN+ RM+E K A P+++ + + +IF+ + +VTE+ F+ +F
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVEN-LMKETHELEGSTVVVDRATPKE 170
+++G ITD+ + D ++ RG GFITY + ++V+ L+K HEL G V V RA PKE
Sbjct: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKE 185
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 49/243 (20%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E R +F YG++ + + KD+ + RG GF+ + + + +++E
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G V +A P++D
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQ---------------------------------------N 87
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
L GS++G P R +KIFVG L T D ++YF +FG I DV + D
Sbjct: 88 VLSRTSGSIHGSPGPGRT--RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR 145
Query: 273 HRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLD-DAGP-----SG-NFMLNSM 324
RGFGF+T+ + D+V + HE+ G V + A P + GP SG N+ L+ +
Sbjct: 146 PRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSGYNYGLSRV 205
Query: 325 DSF 327
+SF
Sbjct: 206 NSF 208
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV-L 62
RK+ V G+ V K+Y +FG + D +VM + T R RGFG++T+ S + V L
Sbjct: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLL 165
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKK 90
H L +M+EVK A PKE P +
Sbjct: 166 KTFHELNGKMVEVKRAVPKELSPGPARS 193
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 109/182 (59%), Gaps = 13/182 (7%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+ KL + GI W+ + + L+EY S +GE+++ ++MK+R TGR+RGFG+V F A V
Sbjct: 4 DSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIV 63
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVK------------KVNRIFIARIPPSVTEATFR 109
+ +HN+ RM+E K A P+++ + + +IF+ + +VTE+ F+
Sbjct: 64 VQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVEN-LMKETHELEGSTVVVDRATP 168
+F+++G ITD+ + D ++ RG GFITY + ++V+ L+K HEL G V V RA P
Sbjct: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVP 183
Query: 169 KE 170
KE
Sbjct: 184 KE 185
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 49/243 (20%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E R +F YG++ + + KD+ + RG GF+ + + + +++E
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G V +A P++D
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQ---------------------------------------N 87
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
L GS++G P R +KIFVG L T D ++YF +FG I DV + D
Sbjct: 88 VLSRTSGSIHGSPGPGRT--RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR 145
Query: 273 HRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLD-DAGP-----SG-NFMLNSM 324
RGFGF+T+ + D+V + HE+ G V + A P + GP SG N+ L+ +
Sbjct: 146 PRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSGYNYGLSRV 205
Query: 325 DSF 327
+SF
Sbjct: 206 NSF 208
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV-L 62
RK+ V G+ V K+Y +FG + D +VM + T R RGFG++T+ S + V L
Sbjct: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLL 165
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKK 90
H L +M+EVK A PKE P +
Sbjct: 166 KTFHELNGKMVEVKRAVPKELSPGPARS 193
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 111/179 (62%), Gaps = 13/179 (7%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + GI W+ D + LKEY + +GE+ + ++M++RATGR+RGFG+V F+ A+ V+
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVN------------RIFIARIPPSVTEATFRSHF 112
+H + R +E K A P+++ + ++ +IF+ +P ++TE+ F+ +F
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYF 126
Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRATPKE 170
+++G ITD+ + D ++ RG GFITY + ++V+ ++ +T HEL G V V RA PKE
Sbjct: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 111/273 (40%), Gaps = 66/273 (24%)
Query: 91 VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
+ ++FI I E + +F YG++ + + +D+ + RG GF+ +++ E ++
Sbjct: 5 LGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI 64
Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
+ H ++G TV +A P++D
Sbjct: 65 IDKHIIDGRTVEAKKAVPRDDQ-------------------------------------- 86
Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
+ GSV G P R KKIFVG LP T D + YF +FG I DV + D
Sbjct: 87 -QNINRQTGSVQGSPGPGRT--KKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNT 143
Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLD-DAGPS-------GNFML 321
RGFGF+T+ + DRV + HE+ G V + A P + GP+ N+ L
Sbjct: 144 QRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNNYSL 203
Query: 322 N--------------SMDSFGGFGGPVRPYGRM 340
N SM GGFG VR GR
Sbjct: 204 NSRASSYLNNYGQGYSMSPIGGFG--VRMDGRF 234
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+K+ V G+P + K Y +FG + D +VM + T R RGFG++T+ S + VL
Sbjct: 106 KKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLY 165
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKK 90
H L +M+EVK A PKE P +
Sbjct: 166 KTFHELNGKMVEVKRAVPKELSPGPTRS 193
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 111/179 (62%), Gaps = 13/179 (7%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + GI W+ D + LKEY + +GE+ + ++M++RATGR+RGFG+V F+ A+ V+
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVN------------RIFIARIPPSVTEATFRSHF 112
+H + R +E K A P+++ + ++ +IF+ +P ++TE+ F+ +F
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYF 126
Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRATPKE 170
+++G ITD+ + D ++ RG GFITY + ++V+ ++ +T HEL G V V RA PKE
Sbjct: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 111/273 (40%), Gaps = 66/273 (24%)
Query: 91 VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
+ ++FI I E + +F YG++ + + +D+ + RG GF+ +++ E ++
Sbjct: 5 LGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI 64
Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
+ H ++G TV +A P++D
Sbjct: 65 IDKHIIDGRTVEAKKAVPRDDQ-------------------------------------- 86
Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
+ GSV G P R KKIFVG LP T D + YF +FG I DV + D
Sbjct: 87 -QNINRQTGSVQGSPGPGRT--KKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNT 143
Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLD-DAGPS-------GNFML 321
RGFGF+T+ + DRV + HE+ G V + A P + GP+ N+ L
Sbjct: 144 QRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNNYSL 203
Query: 322 N--------------SMDSFGGFGGPVRPYGRM 340
N SM GGFG VR GR
Sbjct: 204 NSRASSYLNNYGQGYSMSPIGGFG--VRMDGRF 234
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+K+ V G+P + K Y +FG + D +VM + T R RGFG++T+ S + VL
Sbjct: 106 KKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLY 165
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKK 90
H L +M+EVK A PKE P +
Sbjct: 166 KTFHELNGKMVEVKRAVPKELSPGPTRS 193
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 110/185 (59%), Gaps = 15/185 (8%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M+ KL + GI W+ + D L++Y FG++ + ++MK+R TGR+RGFG+V F A+
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMK-------------APVK-KVNRIFIARIPPSVTEA 106
V+ +H + R +E K A P+++ AP + +IF+ + +VTE+
Sbjct: 61 VVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDR 165
F+++F+++G ITD+ + D ++ RG GFITY + ++VE ++ +T HEL G V V R
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 166 ATPKE 170
A PK+
Sbjct: 181 AVPKD 185
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 45/244 (18%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E R +F+ +GD+ + + KD+ + RG GF+ +A+ E ++ E
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G TV +A P++D N + + + AP
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQ------------------------NVFTRSNSSSHGSPAP 100
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
T P R KKIFVG L T D + YF +FG I DV + D
Sbjct: 101 T-------------PIRT--KKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQR 145
Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD-----DAGPSGNFMLNSMDS 326
RGFGF+T+ +E+ V + + HE+ G V + A P D G G F +M
Sbjct: 146 PRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQLGGFSYGTMSR 205
Query: 327 FGGF 330
G F
Sbjct: 206 VGSF 209
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
+ +K+ V G+ V K Y +FG + D +VM + T R RGFG++T+ S + +
Sbjct: 103 IRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEK 162
Query: 61 VL-SIEHNLGNRMLEVKVATPKEEMKAPVK 89
VL H L +M+EVK A PK+ +P +
Sbjct: 163 VLHKTFHELNGKMVEVKRAVPKDLSPSPSR 192
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 110/185 (59%), Gaps = 15/185 (8%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M+ KL + GI W+ + D L++Y FG++ + ++MK+R TGR+RGFG+V F A+
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMK-------------APVK-KVNRIFIARIPPSVTEA 106
V+ +H + R +E K A P+++ AP + +IF+ + +VTE+
Sbjct: 61 VVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDR 165
F+++F+++G ITD+ + D ++ RG GFITY + ++VE ++ +T HEL G V V R
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 166 ATPKE 170
A PK+
Sbjct: 181 AVPKD 185
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 45/244 (18%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E R +F+ +GD+ + + KD+ + RG GF+ +A+ E ++ E
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G TV +A P++D N + + + AP
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQ------------------------NVFTRSNSSSHGSPAP 100
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
T P R KKIFVG L T D + YF +FG I DV + D
Sbjct: 101 T-------------PIRT--KKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQR 145
Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD-----DAGPSGNFMLNSMDS 326
RGFGF+T+ +E+ V + + HE+ G V + A P D G G F +M
Sbjct: 146 PRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQLGGFSYGTMSR 205
Query: 327 FGGF 330
G F
Sbjct: 206 VGSF 209
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
+ +K+ V G+ V K Y +FG + D +VM + T R RGFG++T+ S + +
Sbjct: 103 IRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEK 162
Query: 61 VL-SIEHNLGNRMLEVKVATPKEEMKAPVK 89
VL H L +M+EVK A PK+ +P +
Sbjct: 163 VLHKTFHELNGKMVEVKRAVPKDLSPSPSR 192
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 110/185 (59%), Gaps = 15/185 (8%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M+ KL + GI W+ + D L++Y FG++ + ++MK+R TGR+RGFG+V F A+
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMK-------------APVK-KVNRIFIARIPPSVTEA 106
V+ +H + R +E K A P+++ AP + +IF+ + +VTE+
Sbjct: 61 VVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDR 165
F+++F+++G ITD+ + D ++ RG GFITY + ++VE ++ +T HEL G V V R
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 166 ATPKE 170
A PK+
Sbjct: 181 AVPKD 185
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 45/244 (18%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E R +F+ +GD+ + + KD+ + RG GF+ +A+ E ++ E
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G TV +A P++D N + + + AP
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQ------------------------NVFTRSNSSSHGSPAP 100
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
T P R KKIFVG L T D + YF +FG I DV + D
Sbjct: 101 T-------------PIRT--KKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQR 145
Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD-----DAGPSGNFMLNSMDS 326
RGFGF+T+ +E+ V + + HE+ G V + A P D G G F +M
Sbjct: 146 PRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQLGGFSYGTMSR 205
Query: 327 FGGF 330
G F
Sbjct: 206 VGSF 209
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
+ +K+ V G+ V K Y +FG + D +VM + T R RGFG++T+ S + +
Sbjct: 103 IRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEK 162
Query: 61 VL-SIEHNLGNRMLEVKVATPKEEMKAPVK 89
VL H L +M+EVK A PK+ +P +
Sbjct: 163 VLHKTFHELNGKMVEVKRAVPKDLSPSPSR 192
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 19/188 (10%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+Q KL + GI W+ + + LKE+ S +G++ + VM+E+ TG+ RGFG+V F+ V
Sbjct: 4 DQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRV 63
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVK------------------KVNRIFIARIPPSV 103
L +H + R ++ K A +E+ + V + +IF+ +PP++
Sbjct: 64 LEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTL 123
Query: 104 TEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVV 162
E FR +FE YG +TD+ + DQ + RG GFIT+ ++V+ ++ +T H+L G V
Sbjct: 124 AEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVE 183
Query: 163 VDRATPKE 170
V RA PK+
Sbjct: 184 VKRALPKD 191
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 37/227 (16%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E + HF YGD+ + + +++ + RG GF+ +++ ++ ++++
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLED 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G TV RA +ED IS ++R +
Sbjct: 67 KHVIDGRTVDAKRAFSREDQ--------------------------QISVSSRSGNSNSG 100
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
N G++ + KIFVG LP E RQYF +GH+ DV + D
Sbjct: 101 MNSGNGGNMRTK---------KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGR 151
Query: 273 HRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGN 318
RGFGF+TF + DRV + H++ G QV + A P DA P N
Sbjct: 152 PRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALP-KDANPGAN 197
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M +K+ V G+P + + ++Y +G + D +VM ++ TGR RGFG++TF + +
Sbjct: 109 MRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDR 168
Query: 61 VL-SIEHNLGNRMLEVKVATPKE 82
VL H+L + +EVK A PK+
Sbjct: 169 VLHKTFHDLNGKQVEVKRALPKD 191
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 19/188 (10%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+Q KL + GI W+ + + LKE+ S +G++ + VM+E+ TG+ RGFG+V F+ V
Sbjct: 4 DQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRV 63
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVK------------------KVNRIFIARIPPSV 103
L +H + R ++ K A +E+ + V + +IF+ +PP++
Sbjct: 64 LEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTL 123
Query: 104 TEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVV 162
E FR +FE YG +TD+ + DQ + RG GFIT+ ++V+ ++ +T H+L G V
Sbjct: 124 AEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVE 183
Query: 163 VDRATPKE 170
V RA PK+
Sbjct: 184 VKRALPKD 191
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 37/227 (16%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E + HF YGD+ + + +++ + RG GF+ +++ ++ ++++
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLED 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G TV RA +ED IS ++R +
Sbjct: 67 KHVIDGRTVDAKRAFSREDQ--------------------------QISVSSRSGNSNSG 100
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
N G++ + KIFVG LP E RQYF +GH+ DV + D
Sbjct: 101 MNSGNGGNMRTK---------KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGR 151
Query: 273 HRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGN 318
RGFGF+TF + DRV + H++ G QV + A P DA P N
Sbjct: 152 PRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALP-KDANPGAN 197
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M +K+ V G+P + + ++Y +G + D +VM ++ TGR RGFG++TF + +
Sbjct: 109 MRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDR 168
Query: 61 VL-SIEHNLGNRMLEVKVATPKE 82
VL H+L + +EVK A PK+
Sbjct: 169 VLHKTFHDLNGKQVEVKRALPKD 191
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
K+ + G+ E ++ K+GE+ D ++MK+R TG+ RGFG++T+ V+
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMP 124
H + ++ +E+K P+ + + + +IF+ IP +VTE FR F +YG++ D +
Sbjct: 106 SHIINSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIM 165
Query: 125 KDQRSKTHRGIGFITYANADSVENLMKETHELE--GSTVVVDRATPKEDDFKP 175
+D + RG GF+T+ ++V++L+ +++E G+ V + +A PK+ + P
Sbjct: 166 RDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPP 218
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 92/225 (40%), Gaps = 55/225 (24%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
+IFI + T A F HF KYG+ITD + KD+++ RG GFITYA+ V+ +
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKV--- 102
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
+E S ++ + I T A+G+
Sbjct: 103 ---IEDSHIINSKQVE-------------------------------IKRTIPRGAVGSK 128
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
KKIFVG +P T ++ R +F R+G + D I RD +
Sbjct: 129 DFRT----------------KKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNR 172
Query: 273 HRGFGFVTF-AEDGVADRVAR-RPHEICGHQVAIDSATPLDDAGP 315
RGFGFVTF E+ V D ++ E G QV I A P P
Sbjct: 173 SRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAP 217
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
+K+ V GIP V D +++ +++GE++D +M++ +T RSRGFG+VTF + + ++LS
Sbjct: 133 KKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLS 192
Query: 64 IEHNL--GNRMLEVKVATPKEEMKAP 87
+ + + +E+K A PK+ P
Sbjct: 193 MGNKIEFAGTQVEIKKAEPKKANAPP 218
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 20/191 (10%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
++ KL V GI E D LK + +K+G++ + +R T RGFG+VTF+ + A N
Sbjct: 8 DKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNA 67
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVK-------------------KVNRIFIARIPPS 102
L H + R +EV+ A P+ E + + +IF+ +P +
Sbjct: 68 LQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPAN 127
Query: 103 VTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVEN-LMKETHELEGSTV 161
++ F+ +FE++G ITD+ + +D + RG GFIT+ + DSV++ +M+ H+L G V
Sbjct: 128 MSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQV 187
Query: 162 VVDRATPKEDD 172
V RA P+E +
Sbjct: 188 EVKRAVPREGN 198
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 36/227 (15%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++F+ I TE T + HF KYGD+ + D+ ++ RG GF+T+++ S N +++
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
TH + G V V +A P+ + +Y+ Y
Sbjct: 71 THAILGRKVEVRKAIPRSEQ----------LQQNQLQNRGGNSYSGYECGN--------- 111
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
E R KKIFVG LP + E+ ++YF RFG I DV + +D+
Sbjct: 112 -------------EHIRT--KKIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHR 156
Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD-DAGPSG 317
RGFGF+TF +ED V + R H++ G QV + A P + +AG G
Sbjct: 157 PRGFGFITFDSEDSVQSVMMRSFHDLNGRQVEVKRAVPREGNAGSEG 203
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
K+ + G+ + + +Y ++GE+ D ++MK+R TGR RGFG++T+ V+
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMP 124
H + ++ +E+K PK + K +IF+ IP +V+E + F K+G++ + +
Sbjct: 79 NHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEII 138
Query: 125 KDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKE 170
+D +K RG GF+ + + +V+NL+ + + +++ + V + +A PK+
Sbjct: 139 RDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
KIF+G L ++ T E+ +YF R+G I D I +D RGFGF+T+A+ V D+V +
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 294 PHEICGHQVAIDSATP 309
H I QV I P
Sbjct: 79 NHIINDKQVEIKRTIP 94
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
+ +K+ V GIP V D LK + SK G + + ++++ T RSRGFG+V F S N
Sbjct: 103 FKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDN 162
Query: 61 VLSIEH--NLGNRMLEVKVATPKE 82
+L+ + ++ + +E+K A PK+
Sbjct: 163 LLADGNMIDMDDTQVEIKKAEPKK 186
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
+ +RKL + G+ W+ T+GL+ S +GELE+ IV+ ++ATG+S+G+G+VTF VD A
Sbjct: 70 ISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALL 129
Query: 61 VL-SIEHNLGNRMLEVKVA---TPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
L + R+ ++A A +I+++ +PP + +HF YG
Sbjct: 130 ALREPSKRIDGRVTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAHFSIYG 189
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
+I + + D+++ +G Y + + E
Sbjct: 190 EIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSE 225
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 72/328 (21%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ + G+P + D ++E G++ + ++K+R TG S+G+ +V + + + A+ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 65 EHN--LGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDL 121
HN + L ++ K +R+FI IP + TE FR E G + +
Sbjct: 165 IHNKEFKGKTLRCLLSETK----------HRLFIGNIPKTWTEDEFRKAVEGVGPGVESI 214
Query: 122 YMPKD-QRSKTHRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPI 176
+ KD Q +RG F+ Y N AD S + + +L+G T V A PK
Sbjct: 215 DLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPK------- 267
Query: 177 XXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIF 236
S AA LY
Sbjct: 268 -----------------------TSPDQSAAASQVKALY--------------------- 283
Query: 237 VGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RP 294
V ++P+ TTE L++ F R G + V +P K SG R FGF+ +AE A + +
Sbjct: 284 VKNIPENVTTEQLKELFRRHGEVTKVVMP-PGKASGKRDFGFIHYAERSSALKAVKETEK 342
Query: 295 HEICGHQVAIDSATPLDDAGPSGNFMLN 322
+EI G + + A P + P G + N
Sbjct: 343 YEIDGQALEVVIAKPQAEKKPDGGYAYN 370
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGE-LEDCIVMKE-RATGRSRGFGYVTFTSVDDA-- 58
+ +L + IP D ++ + G +E ++K+ + R+RGF +V + + A
Sbjct: 183 KHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADF 242
Query: 59 --KNVLSIEHNLGNRMLEVKVATPKE--EMKAPVKKVNRIFIARIPPSVTEATFRSHFEK 114
+ + S+ L V A PK + A +V +++ IP +VT + F +
Sbjct: 243 SRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRR 302
Query: 115 YGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPK 169
+G++T + MP + S R GFI YA S +KET +E++G + V A P+
Sbjct: 303 HGEVTKVVMPPGKAS-GKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQ 358
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 72/328 (21%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ + G+P + D ++E G++ + ++K+R TG S+G+ +V + + + A+ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 65 EHN--LGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDL 121
HN + L ++ K +R+FI IP + TE FR E G + +
Sbjct: 165 IHNKEFKGKTLRCLLSETK----------HRLFIGNIPKTWTEDEFRKAVEGVGPGVESI 214
Query: 122 YMPKD-QRSKTHRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPI 176
+ KD Q +RG F+ Y N AD S + + +L+G T V A PK
Sbjct: 215 DLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPK------- 267
Query: 177 XXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIF 236
S AA LY
Sbjct: 268 -----------------------TSPDQSAAASQVKALY--------------------- 283
Query: 237 VGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RP 294
V ++P+ TTE L++ F R G + V +P K SG R FGF+ +AE A + +
Sbjct: 284 VKNIPENVTTEQLKELFRRHGEVTKVVMP-PGKASGKRDFGFIHYAERSSALKAVKETEK 342
Query: 295 HEICGHQVAIDSATPLDDAGPSGNFMLN 322
+EI G + + A P + P G + N
Sbjct: 343 YEIDGQALEVVIAKPQAEKKPDGGYAYN 370
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGE-LEDCIVMKE-RATGRSRGFGYVTFTSVDDA-- 58
+ +L + IP D ++ + G +E ++K+ + R+RGF +V + + A
Sbjct: 183 KHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADF 242
Query: 59 --KNVLSIEHNLGNRMLEVKVATPKE--EMKAPVKKVNRIFIARIPPSVTEATFRSHFEK 114
+ + S+ L V A PK + A +V +++ IP +VT + F +
Sbjct: 243 SRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRR 302
Query: 115 YGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPK 169
+G++T + MP + S R GFI YA S +KET +E++G + V A P+
Sbjct: 303 HGEVTKVVMPPGKAS-GKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQ 358
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 72/328 (21%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ + G+P + D ++E G++ + ++K+R TG S+G+ +V + + + A+ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 65 EHN--LGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDL 121
HN + L ++ K +R+FI IP + TE FR E G + +
Sbjct: 165 IHNKEFKGKTLRCLLSETK----------HRLFIGNIPKTWTEDEFRKAVEGVGPGVESI 214
Query: 122 YMPKD-QRSKTHRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPI 176
+ KD Q +RG F+ Y N AD S + + +L+G T V A PK
Sbjct: 215 DLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPK------- 267
Query: 177 XXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIF 236
S AA LY
Sbjct: 268 -----------------------TSPDQSAAASQVKALY--------------------- 283
Query: 237 VGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RP 294
V ++P+ TTE L++ F R G + V +P K SG R FGF+ +AE A + +
Sbjct: 284 VKNIPENVTTEQLKELFRRHGEVTKVVMP-PGKASGKRDFGFIHYAERSSALKAVKETEK 342
Query: 295 HEICGHQVAIDSATPLDDAGPSGNFMLN 322
+EI G + + A P + P G + N
Sbjct: 343 YEIDGQALEVVIAKPQAEKKPDGGYAYN 370
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGE-LEDCIVMKE-RATGRSRGFGYVTFTSVDDA-- 58
+ +L + IP D ++ + G +E ++K+ + R+RGF +V + + A
Sbjct: 183 KHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADF 242
Query: 59 --KNVLSIEHNLGNRMLEVKVATPKE--EMKAPVKKVNRIFIARIPPSVTEATFRSHFEK 114
+ + S+ L V A PK + A +V +++ IP +VT + F +
Sbjct: 243 SRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRR 302
Query: 115 YGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPK 169
+G++T + MP + S R GFI YA S +KET +E++G + V A P+
Sbjct: 303 HGEVTKVVMPPGKAS-GKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQ 358
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
+RKL V G+ E T+ L+ S +G+L++ IV+ ++ATGRS+G+G+V + VD A VL
Sbjct: 75 RRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGA--VL 132
Query: 63 SIEH---NLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
+++ + RM ++A + ++F+ +P V+ + S F KYG+I
Sbjct: 133 ALKEPSKKIDGRMTVTQLAAAGSTGGDVSSR--KVFVGNVPFEVSAESLLSEFSKYGEIE 190
Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGSTVV----VDRATPK 169
+ + D+ S RG F Y + +N + E+ + ++G V+ VD PK
Sbjct: 191 EGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVICKFAVDNKKPK 245
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 137/360 (38%), Gaps = 81/360 (22%)
Query: 8 VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHN 67
V GIP + ++ LKE+ + GE+ +MK + ++GF +VT+ +V+ A + +N
Sbjct: 114 VGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNN 173
Query: 68 LGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYMPKD 126
+ ++K +T + + NR+FI IP S E + G +T + + KD
Sbjct: 174 TEFKGRKIKCSTSQAK--------NRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKD 225
Query: 127 QRS-KTHRGIGFITYANADSVE----NLMKETHELEGSTVVVDRATPKEDDFKPIXXXXX 181
++ +RG FI Y N E +M + +L ++ V A PK D
Sbjct: 226 MKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDS-------- 277
Query: 182 XXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLP 241
SA+++ A ++V +LP
Sbjct: 278 -------------------SASSQVKA--------------------------VYVKNLP 292
Query: 242 QEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP--HEICG 299
+ T E L++ F G I V +P GFV FAE A + + +E+ G
Sbjct: 293 KNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDG 352
Query: 300 HQVAIDSATPLDD-----AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVP 354
+ A P D + +L S G+G PYG + GYG P
Sbjct: 353 QNLECSLAKPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGAL-------GAGYGAP 405
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCI--VMKERATGRSRGFGYVTFTSVDDA-- 58
+ +L + IP LK+ ++ G + V + +RGF ++ + + A
Sbjct: 189 KNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEY 248
Query: 59 --KNVLSIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
+ ++S LG+ V A PK + +V +++ +P +VT+ + FE +G
Sbjct: 249 GRQKMMSPSFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHG 308
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPKED 171
IT + +P + + IGF+ +A + +K T +EL+G + A P+ D
Sbjct: 309 KITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQAD 365
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 137/360 (38%), Gaps = 81/360 (22%)
Query: 8 VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHN 67
V GIP + ++ LKE+ + GE+ +MK + ++GF +VT+ +V+ A + +N
Sbjct: 114 VGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNN 173
Query: 68 LGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYMPKD 126
+ ++K +T + + NR+FI IP S E + G +T + + KD
Sbjct: 174 TEFKGRKIKCSTSQAK--------NRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKD 225
Query: 127 QRS-KTHRGIGFITYANADSVE----NLMKETHELEGSTVVVDRATPKEDDFKPIXXXXX 181
++ +RG FI Y N E +M + +L ++ V A PK D
Sbjct: 226 MKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDS-------- 277
Query: 182 XXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLP 241
SA+++ A ++V +LP
Sbjct: 278 -------------------SASSQVKA--------------------------VYVKNLP 292
Query: 242 QEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP--HEICG 299
+ T E L++ F G I V +P GFV FAE A + + +E+ G
Sbjct: 293 KNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDG 352
Query: 300 HQVAIDSATPLDD-----AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVP 354
+ A P D + +L S G+G PYG + GYG P
Sbjct: 353 QNLECSLAKPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGAL-------GAGYGAP 405
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCI--VMKERATGRSRGFGYVTFTSVDDA-- 58
+ +L + IP LK+ ++ G + V + +RGF ++ + + A
Sbjct: 189 KNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEY 248
Query: 59 --KNVLSIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
+ ++S LG+ V A PK + +V +++ +P +VT+ + FE +G
Sbjct: 249 GRQKMMSPSFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHG 308
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPKED 171
IT + +P + + IGF+ +A + +K T +EL+G + A P+ D
Sbjct: 309 KITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQAD 365
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 137/360 (38%), Gaps = 81/360 (22%)
Query: 8 VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHN 67
V GIP + ++ LKE+ + GE+ +MK + ++GF +VT+ +V+ A + +N
Sbjct: 114 VGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNN 173
Query: 68 LGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYMPKD 126
+ ++K +T + + NR+FI IP S E + G +T + + KD
Sbjct: 174 TEFKGRKIKCSTSQAK--------NRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKD 225
Query: 127 QRS-KTHRGIGFITYANADSVE----NLMKETHELEGSTVVVDRATPKEDDFKPIXXXXX 181
++ +RG FI Y N E +M + +L ++ V A PK D
Sbjct: 226 MKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDS-------- 277
Query: 182 XXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLP 241
SA+++ A ++V +LP
Sbjct: 278 -------------------SASSQVKA--------------------------VYVKNLP 292
Query: 242 QEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP--HEICG 299
+ T E L++ F G I V +P GFV FAE A + + +E+ G
Sbjct: 293 KNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDG 352
Query: 300 HQVAIDSATPLDD-----AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVP 354
+ A P D + +L S G+G PYG + GYG P
Sbjct: 353 QNLECSLAKPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGAL-------GAGYGAP 405
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCI--VMKERATGRSRGFGYVTFTSVDDA-- 58
+ +L + IP LK+ ++ G + V + +RGF ++ + + A
Sbjct: 189 KNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEY 248
Query: 59 --KNVLSIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
+ ++S LG+ V A PK + +V +++ +P +VT+ + FE +G
Sbjct: 249 GRQKMMSPSFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHG 308
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPKED 171
IT + +P + + IGF+ +A + +K T +EL+G + A P+ D
Sbjct: 309 KITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQAD 365
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ + L S++GE+EDC + ++ +G+S+G+G++ F A+N L
Sbjct: 127 RKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
Query: 64 -IEHNLGNRMLEVKVAT--PKEEMKAPVKKV------------NRIFIARIPPSVTEATF 108
+ +GNRM ++A+ P ++ +I+I+ + P +
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH-ELEGSTVVVDRA 166
F ++G+I + + D+ + +G Y +A+S ++E H E EG + +A
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKA 305
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ + L S++GE+EDC + ++ +G+S+G+G++ F A+N L
Sbjct: 127 RKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
Query: 64 -IEHNLGNRMLEVKVAT--PKEEMKAPVKKV------------NRIFIARIPPSVTEATF 108
+ +GNRM ++A+ P ++ +I+I+ + P +
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH-ELEGSTVVVDRA 166
F ++G+I + + D+ + +G Y +A+S ++E H E EG + +A
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKA 305
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ + L S++GE+EDC + ++ +G+S+G+G++ F A+N L
Sbjct: 127 RKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
Query: 64 -IEHNLGNRMLEVKVAT--PKEEMKAPVKKV------------NRIFIARIPPSVTEATF 108
+ +GNRM ++A+ P ++ +I+I+ + P +
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH-ELEGSTVVVDRA 166
F ++G+I + + D+ + +G Y +A+S ++E H E EG + +A
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKA 305
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ + L S++GE+EDC + ++ +G+S+G+G++ F A+N L
Sbjct: 127 RKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
Query: 64 -IEHNLGNRMLEVKVAT--PKEEMKAPVKKV------------NRIFIARIPPSVTEATF 108
+ +GNRM ++A+ P ++ +I+I+ + P +
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH-ELEGSTVVVDRA 166
F ++G+I + + D+ + +G Y +A+S ++E H E EG + +A
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKA 305
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ + L S++GE+EDC + ++ +G+S+G+G++ F A+N L
Sbjct: 127 RKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
Query: 64 -IEHNLGNRMLEVKVAT--PKEEMKAPVKKV------------NRIFIARIPPSVTEATF 108
+ +GNRM ++A+ P ++ +I+I+ + P +
Sbjct: 187 EPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKL 246
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH-ELEGSTVVVDRA 166
F ++G+I + + D+ + +G Y +A+S ++E H E EG + +A
Sbjct: 247 FGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKA 305
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 67/282 (23%)
Query: 8 VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHN 67
V GIP + ++ LKE+ + GE+ +MK + ++GF +VT+ +V+ A + +N
Sbjct: 114 VGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNN 173
Query: 68 LGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYMPKD 126
+ ++K +T + + NR+FI IP S E + G +T + + KD
Sbjct: 174 TEFKGRKIKCSTSQAK--------NRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKD 225
Query: 127 QRS-KTHRGIGFITYANADSVE----NLMKETHELEGSTVVVDRATPKEDDFKPIXXXXX 181
++ +RG FI Y N E +M + +L ++ V A PK D
Sbjct: 226 MKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDS-------- 277
Query: 182 XXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLP 241
SA+++ A ++V +LP
Sbjct: 278 -------------------SASSQVKA--------------------------VYVKNLP 292
Query: 242 QEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAE 283
+ T E L++ F G I V +P GFV FAE
Sbjct: 293 KNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAE 334
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 34 IVMKERATGRSRGFGYVTFTSVDDA----KNVLSIEHNLGNRMLEVKVATPKEEMKAPVK 89
+V + +RGF ++ + + A + ++S LG+ V A PK +
Sbjct: 222 LVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDSSASS 281
Query: 90 KVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENL 149
+V +++ +P +VT+ + FE +G IT + +P + + IGF+ +A +
Sbjct: 282 QVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKA 341
Query: 150 MKET--HELEG 158
+K T +EL+G
Sbjct: 342 LKNTERYELDG 352
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 15/114 (13%)
Query: 72 MLEVKVATPKEEMK-------------APVK-KVNRIFIARIPPSVTEATFRSHFEKYGD 117
+E K A P+++ AP + +IF+ + +VTE+ F+++F+++G
Sbjct: 2 QVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGT 61
Query: 118 ITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRATPKE 170
ITD+ + D ++ RG GFITY + ++VE ++ +T HEL G V V RA PK+
Sbjct: 62 ITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKD 115
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 233 KKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTF-AEDGVADRVA 291
KKIFVG L T D + YF +FG I DV + D RGFGF+T+ +E+ V +
Sbjct: 36 KKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLH 95
Query: 292 RRPHEICGHQVAIDSATPLDDA-----GPSGNFMLNSMDSFGGF 330
+ HE+ G V + A P D + G G F +M G F
Sbjct: 96 KTFHELNGKMVEVKRAVPKDLSPSPSRGQLGGFSYGTMSRVGSF 139
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
+ +K+ V G+ V K Y +FG + D +VM + T R RGFG++T+ S + +
Sbjct: 33 IRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEK 92
Query: 61 VL-SIEHNLGNRMLEVKVATPKEEMKAPVK 89
VL H L +M+EVK A PK+ +P +
Sbjct: 93 VLHKTFHELNGKMVEVKRAVPKDLSPSPSR 122
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ + L SK+GE+EDC + ++A+G+S+G+ ++ F + L
Sbjct: 165 RKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALK 224
Query: 64 IEHN-LGNRMLEVKVATPKEEMKAPVKKVN-------RIFIARIPPSVTEATFRSHFEKY 115
+GNR ++A+ P +IF++ + + F+++
Sbjct: 225 QPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQF 284
Query: 116 GDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHEL-EGSTVVVDRA 166
G++ D + D+ + +G Y +S + ++E +++ EG T+ +A
Sbjct: 285 GEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKA 336
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ + L SK+GE+EDC + ++A+G+S+G+ ++ F + L
Sbjct: 165 RKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALK 224
Query: 64 IEHN-LGNRMLEVKVATPKEEMKAPVKKVN-------RIFIARIPPSVTEATFRSHFEKY 115
+GNR ++A+ P +IF++ + + F+++
Sbjct: 225 QPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQF 284
Query: 116 GDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHEL-EGSTVVVDRA 166
G++ D + D+ + +G Y +S + ++E +++ EG T+ +A
Sbjct: 285 GEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKA 336
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ + L SK+GE+EDC + ++A+G+S+G+ ++ F + L
Sbjct: 165 RKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALK 224
Query: 64 IEHN-LGNRMLEVKVATPKEEMKAPVKKVN-------RIFIARIPPSVTEATFRSHFEKY 115
+GNR ++A+ P +IF++ + + F+++
Sbjct: 225 QPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQF 284
Query: 116 GDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHEL-EGSTVVVDRA 166
G++ D + D+ + +G Y +S + ++E +++ EG T+ +A
Sbjct: 285 GEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKA 336
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E KL V P++VD++ L + G +E V+ R T SRGFG+VT ++V++A++
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 62 LSI--EHNLGNRMLEVKVATPK-------EEMKAPVKKVNRIFIARIPPSVTEATFRSHF 112
+ ++ R L V A+PK E + V RI++A + V + F
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF 226
Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELEGSTVVVDRA 166
++G I + D+ + RG GF+T ++ + + + + LEG T+ V A
Sbjct: 227 SEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVA 282
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E KL V +P + D L +F +++ ++K++AT SRG +V S D+A
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 62 LSIEHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
++ HN + L+VK A + E + +++FI +P +++E + F KYG
Sbjct: 74 VNACHNKKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNISEVEVSALFSKYG 128
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
I DL + + + + G F+ Y + ++ H++EGS+V
Sbjct: 129 TIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSV 176
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 140/367 (38%), Gaps = 85/367 (23%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
+ ++ V GIP + T+ LKE+ GE+ + K + +RGF +VT+ S++ A +
Sbjct: 349 KSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAI 408
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGD-ITDL 121
+N + ++K + K + K+ R+FI IP S E + G +T +
Sbjct: 409 KELNNTEFKAGKIKCS--KSQAKS------RLFIGNIPRSWGEKDLKKVVSDIGPGVTAV 460
Query: 122 YMPKDQRS-KTHRGIGFITYANADSVE----NLMKETHELEGSTVVVDRATPKEDDFKPI 176
+ KD ++ +RG FI Y N E + + +L + V+ A PK
Sbjct: 461 ELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEPK------- 513
Query: 177 XXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIF 236
NA SA+++ K+++
Sbjct: 514 --------------------NADSSASSQV--------------------------KEVY 527
Query: 237 VGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRPHE 296
V +LP+ T E L++ F G I V +P GFV FAE A + + +
Sbjct: 528 VKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKNTEK 587
Query: 297 ICGHQVAIDSATPLDDAGPSGNFMLNSMDSFG---------GFGGPVRPYGRMYGSLDYD 347
++ + A P +++++ + G G+G PYG +
Sbjct: 588 YVLDGQILECSLAKQQADPKA--VVSNIQTQGSLPRYPPHVGYGLDGNPYGVLGA----- 640
Query: 348 DWGYGVP 354
GYG P
Sbjct: 641 --GYGAP 645
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 15/175 (8%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL +P+ VD+ L + ++G E V+ +R TG+SRGF +VT + V+D V+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVI-- 171
Query: 65 EHNLG-----NRMLEVKVA---TPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
NL R L V + PKE + + ++F+ + +VT + F+++G
Sbjct: 172 -QNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEY--KLFVGNLAWTVTSESLTQAFQEHG 228
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELEGSTVVVDRATPK 169
+ + D + RG GF++YA ++ + + ELEG T+ V A K
Sbjct: 229 TVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGK 283
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E KL V +P + D L +F +++ ++K++AT SRG +V S D+A
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 62 LSIEHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
++ HN + L+VK A + E + +++FI +P +++E + F KYG
Sbjct: 74 VNACHNKKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNISEVEVSALFSKYG 128
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
I DL + + + +T +G F+ Y + ++ H++EGS+V
Sbjct: 129 TIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 175
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E KL V +P + D L +F +++ ++K++AT SRG +V S D+A
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 62 LSIEHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
++ HN + L+VK A + E + +++FI +P +++E + F KYG
Sbjct: 74 VNACHNKKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNISEVEVSALFSKYG 128
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
I DL + + + +T +G F+ Y + ++ H++EGS+V
Sbjct: 129 TIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 175
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M KL + G+ + D GL+E S++G++ D ++ +R TGRSRGFG++TF + ++A +
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 61 VLSIEHN--LGNRMLEVKVATPK 81
L N L R + V AT +
Sbjct: 97 ALQAMDNKELDGRTVRVNYATER 119
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 74 EVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHR 133
++ ++TP ++FI + S E R F +YGD+ D + D+ + R
Sbjct: 22 DLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSR 81
Query: 134 GIGFITYANADSVENLMK--ETHELEGSTVVVDRATPK 169
G GFIT+A ++ + ++ + EL+G TV V+ AT +
Sbjct: 82 GFGFITFATSEEASSALQAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M KL + G+ + D GL+E S++G++ D ++ +R TGRSRGFG++TF + ++A +
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 61 VLSIEHN--LGNRMLEVKVATPK 81
L N L R + V AT +
Sbjct: 97 ALQAMDNKELDGRTVRVNYATER 119
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 74 EVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHR 133
++ ++TP ++FI + S E R F +YGD+ D + D+ + R
Sbjct: 22 DLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSR 81
Query: 134 GIGFITYANADSVENLMK--ETHELEGSTVVVDRATPK 169
G GFIT+A ++ + ++ + EL+G TV V+ AT +
Sbjct: 82 GFGFITFATSEEASSALQAMDNKELDGRTVRVNYATER 119
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTS---VDDA 58
E K+ V +P++VD++ L + + G +E V+ R T RSRGFG+VT ++ V+ A
Sbjct: 120 EDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERA 179
Query: 59 KNVLSIEHNLGNRMLEVKVATPK--EEMKAPVKKVN---RIFIARIPPSVTEATFRSHFE 113
N S L R+L V A P+ ++ P + N R ++ +P V ++ F
Sbjct: 180 VNKFS-GFELDGRLLTVNKAAPRGTPRLRQP-RTFNSGLRAYVGNLPWDVDNSSLEQLFS 237
Query: 114 KYGDITDLYMPKDQRSKTHRGIGFITYAN 142
++G + + D+ + RG GF+T +N
Sbjct: 238 EHGKVESAQVVYDRETGRSRGFGFVTMSN 266
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 8 VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE-- 65
V +PW+VD L++ S+ G++E V+ +R TGRSRGFG+VT ++ + + ++
Sbjct: 220 VGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDG 279
Query: 66 HNLGNRMLEVKVA 78
+ R + V VA
Sbjct: 280 QSFNGRAIRVNVA 292
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E KL V P++VD++ L + G +E V+ R T SRGFG+VT ++V++A++
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 62 LSI--EHNLGNRMLEVKVATPK-------EEMKAPVKKVNRIFIARIPPSVTEATFRSHF 112
+ ++ R L V A+PK E + V RI++A + V + F
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF 226
Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYAN 142
++G I + D+ + RG GF+T ++
Sbjct: 227 SEHGKIVSARVVYDRETGRSRGFGFVTMSD 256
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 115/284 (40%), Gaps = 54/284 (19%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
+ V + +D GL + K+G + + + G+S+GFGY+ F S +++ NV +
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARSE-DGKSKGFGYIQFDS-EESANVAIQK 162
Query: 66 HN---LGNRMLEVKVATPKEEMKAPV--KKVNRIFIARIPPSVTEATFRSHFEKYGDITD 120
N + ++ + V K E P K +++ + P VTE F +G I
Sbjct: 163 MNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVS 222
Query: 121 LYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELEGSTVVVDRATPKEDDFKPIXX 178
L + KD+ ++ +G GF+ Y + D M+ + + + V RA K + + +
Sbjct: 223 LAIKKDENGQS-KGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQIL-- 279
Query: 179 XXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVG 238
++ ++ ++ +G I+V
Sbjct: 280 -----------------HHLFVEKGLKH------------------------MGSNIYVK 298
Query: 239 HLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFA 282
++ E+LR +F G +L + RD K + +GFGFV F+
Sbjct: 299 NIDTSVGDEELRDHFSACGEVLSAKVMRDDKGTS-KGFGFVCFS 341
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 20 LKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE--HNLGNRMLEVKV 77
L E S FG++ + +K+ G+S+GFG+V + S DDA+ + G+++L V
Sbjct: 210 LGEKFSSFGKIVS-LAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVAR 268
Query: 78 ATPKEEMKAPVKKV----------NRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQ 127
A K E + + + + I++ I SV + R HF G++ + +D
Sbjct: 269 AQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDD 328
Query: 128 RSKTHRGIGFITYANADSVENLMK--ETHELEGSTVVVDRATPKED 171
+ T +G GF+ ++ M G + VD A KED
Sbjct: 329 KG-TSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKKED 373
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 20 LKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLEVKVAT 79
L + S+F L V K+ ATG+S +GYV +S +A + ++++ ++V
Sbjct: 31 LYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELKNHSSLNGKVIRVMW 90
Query: 80 PKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFIT 139
+ A +F+ + S+ F+KYG+I + + + K+ +G G+I
Sbjct: 91 LSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKS-KGFGYIQ 149
Query: 140 YANADSVENLMKETHELEGSTV 161
+ DS E+ ++ GSTV
Sbjct: 150 F---DSEESANVAIQKMNGSTV 168
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + G+ + D + L+E S++GE+ D ++ +R TGRSRGFG++TF SV++A + +
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 65 --EHNLGNRMLEVKVATPK 81
+L R + V A +
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M KL + G+ + VD L++ + +G++ + V+ +R TGRSRGFG+V FTS + A +
Sbjct: 33 MSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATS 92
Query: 61 VLSIE-HNLGNRMLEVKVATPKE 82
LS++ +L R + V A ++
Sbjct: 93 ALSMDGQDLNGRNIRVSYANDRQ 115
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI- 64
L V G+ + D + L+E S++GE+ D ++ +R TGRSRGFG++TF SV++A + +
Sbjct: 52 LSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 111
Query: 65 -EHNLGNRMLEVKVATPK 81
+L R + V A +
Sbjct: 112 DGQDLHGRRVRVNYANER 129
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE D L+E+ K+G++ + +++ ++ TGRS+G+G+VTF D AK
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKAC 76
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE D L+E+ K+G++ + +++ ++ TGRS+G+G+VTF D AK
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKAC 76
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 38/54 (70%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+ WE + +K+Y +FGE+ + +V+ ++ATGRS+G+G+VTF D A
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAA 70
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M KL + G+ + VD L++ + +G++ + V+ +R TGRSRGFG+V FTS + A +
Sbjct: 33 MSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATS 92
Query: 61 VLSIE 65
LS++
Sbjct: 93 ALSMD 97
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 38/54 (70%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+ WE + +K+Y +FGE+ + +V+ ++ATGRS+G+G+VTF D A
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAA 70
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
L + + ++ L+E S FG++ V K+ + G S+GFG+V F + +DAK +
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 66 H--NLGNRMLEVKVATPKEEMKAPVK--------------KVNRIFIARIPPSVTEATFR 109
+ LG+++L V A K E + + K + I++ I +V++ R
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRAT 167
HF G IT + +D + + +G GF+ ++ + + H G + V A
Sbjct: 310 DHFSVCGTITSAKIMRDDKGIS-KGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQ 368
Query: 168 PKED 171
KED
Sbjct: 369 RKED 372
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGE-LEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
+ V + +D GL++ KFG L +VM E G+S+G+G+V F + + A +
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE--DGKSKGYGFVQFETEESANAAIER 157
Query: 65 EHN--LGNRMLEVKVATPKEE--MKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITD 120
+ +G++ + V K + P + +++ + ++E R F +G I
Sbjct: 158 LNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIIS 217
Query: 121 LYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE-GSTVV-VDRATPKED 171
L + KD + +G GF+ + N + + M+ + L+ GS ++ V RA K +
Sbjct: 218 LAVAKDSNGMS-KGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAE 269
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTF 52
+ V G+ W D+ L++ SKFGE+ D V+ +R TGRSRGFG+VTF
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTF 56
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 15/177 (8%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RKL V IP V D L++ + + G +E VM ++ + RSR F +VT +V+DA N +
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDA-NAAA 118
Query: 64 IEHN---LGNRMLEVKVA-TPKEEMKAPVKKVN--------RIFIARIPPSVTEATFRSH 111
+ N +G R ++V + P PV+ ++++ + +VT + +
Sbjct: 119 EKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKF 178
Query: 112 FEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE--LEGSTVVVDRA 166
F + G+ + + + G GF+T+++ + VE + + LEG + V++A
Sbjct: 179 FSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 106/285 (37%), Gaps = 49/285 (17%)
Query: 15 VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRML- 73
+D L + GE+ V++ + TG+S G+G+V F + A+ VL N M+
Sbjct: 127 MDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVL---QNFNGTMMP 183
Query: 74 ------EVKVAT------PKEEMKAPVKKVNRIFIARIPPSVTEATFRSHF-EKYGDITD 120
+ AT E + +F+ + VT+A + F K+ I
Sbjct: 184 NTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKG 243
Query: 121 LYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGST--VVVDRATPKEDDFKPIXX 178
+ D + +G GF+ + + M E + + S+ + V ATPK+ P
Sbjct: 244 AKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNP--- 300
Query: 179 XXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVG 238
Y S A G + N G IFVG
Sbjct: 301 ------------------QQYSSQAVVLAGGGG---HSNGAMAQGSQSEGDSNNTTIFVG 339
Query: 239 HLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAE 283
L + + EDLRQ F +FG ++ V IP +G GFV A+
Sbjct: 340 GLDSDISDEDLRQPFLQFGDVISVKIPVG------KGCGFVQLAD 378
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 124/316 (39%), Gaps = 45/316 (14%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E R L + + + VD + L S GE+ +++ + TG+ G+G++ F S A+ V
Sbjct: 13 EVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERV 72
Query: 62 LSIEHNLGNRM------LEVKVAT-PKEEMKAPVKKVNRIFIARIPPSVT----EATFRS 110
L + G +M + A+ E + + IF+ + P VT + TFR+
Sbjct: 73 LQTYN--GTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRT 130
Query: 111 HFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGST--VVVDRATP 168
H YG + + D + +G GF+ +++ M E + + ST + + ATP
Sbjct: 131 H---YGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATP 187
Query: 169 KEDDFKPIXXXXXXXXXXXXXXXXXXAYNAY-ISATTRYAALGAPTLYDNPGSVYGRGEP 227
K+ Y + A T P YD +
Sbjct: 188 KK------TTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTT------ 235
Query: 228 AREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVA 287
I+VG+L + E+L+Q F +FG I+ V K + GFV F A
Sbjct: 236 -------IYVGNLDLNVSEEELKQNFLQFGEIVSV------KVHPGKACGFVQFGARASA 282
Query: 288 DRVARRPH-EICGHQV 302
+ ++ +I G QV
Sbjct: 283 EEAIQKMQGKILGQQV 298
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+ WE D LK Y +FG++ + +V+ +R TG+S+G+G+VTF + A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+ WE D LK Y +FG++ + +V+ +R TG+S+G+G+VTF + A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M KL V GI + D GL+E +++G++ D V+ +R GRS+GFG+VTF + ++A
Sbjct: 37 MSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASA 96
Query: 61 VLSIEHN--LGNRMLEVKVATPK 81
L N L R + V A +
Sbjct: 97 ALQAMDNQELHGRTVRVNYAQER 119
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 15 VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNL--GNRM 72
+D L + S FG++ C + + +G+S+G+G+V F + D A+N + + + ++
Sbjct: 131 IDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQ 189
Query: 73 LEVKVATPKEEMKAPVKKV--NRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSK 130
+ V K++ + K N +++ + S TE ++ F YG IT + +D +
Sbjct: 190 VFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGR 249
Query: 131 THRGIGFITYANADSVENLMKETHELEGSTV 161
+ + GF+ + NA E+ K L G V
Sbjct: 250 S-KCFGFVNFENA---EDAAKAVEALNGKKV 276
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
L V + V+ L + ++ G++ V ++ AT RS G+GYV FT+ DA L +
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 66 HNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPK 125
+ ++V + + IFI + ++ F +G I +
Sbjct: 94 NFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIAT 153
Query: 126 DQRSKTHRGIGFITYANADSVENLMKETH 154
D ++ +G GF+ + DS +N + + +
Sbjct: 154 DGSGQS-KGYGFVQFEAEDSAQNAIDKLN 181
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 15 VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLG----N 70
DT L+ + K+ ++ V+ + TGRS+G+G+V F DD + ++ G +
Sbjct: 199 TDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFG--DDGERSKALNEMNGVFCSS 256
Query: 71 RMLEVKVATPKEE-------------MKAPVKKVN-RIFIARIPPSVTEATFRSHFEKYG 116
R + + ATP++ ++ N IF+ + PS T R F +YG
Sbjct: 257 RAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYG 316
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTV 161
+I + +P +G GF+ +AN ++ E ++ +L G+TV
Sbjct: 317 EIVSVKIP------VGKGCGFVQFANRNNAEEALQ---KLNGTTV 352
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+ WE D LK Y +FG++ + +V+ +R TG+S+G+G+VTF + A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+ WE D LK Y +FG++ + +V+ +R TG+S+G+G+VTF + A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
KL V GI + D L + SK+G++ D ++ +R +GRS+GFG+VT+ +V++A + +
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
KL V GI + D L + SK+G++ D ++ +R +GRS+GFG+VT+ +V++A + +
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+QR + +P + + E+ SK G++ D ++ +R + RS+G GY+ F
Sbjct: 200 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 259
Query: 62 LSIEHNL------------GNRMLEVKVATPKEEMKAPVKKVNR-IFIARIPPSVTEATF 108
+++ L + L A+ + P V+R +++ + ++TEA
Sbjct: 260 IALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANL 319
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE--GSTVVVDRA 166
R FE +G I + +P D + +G GF+ +A+ + + +LE G T+ V
Sbjct: 320 REIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSV 379
Query: 167 T 167
T
Sbjct: 380 T 380
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
K+ V G+ WE TD ++ Y +FG++ + +++ ++ TG+S+G+G+VTF + A+ +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACA 75
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E T+++R YF +FG IL+ I D +G+GFVTF + A R
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 294 PHEI 297
P+ +
Sbjct: 77 PNPV 80
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V +P + ++ + G + + ++K+R TG+ +G ++ + + ++A +
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 65 EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
HN G ++V+ A + E V+ ++F+ + + F KYG I
Sbjct: 149 LHNRHTLPGGVGPIQVRYADGERERLGAVEY--KLFVGSLNKQASVKEVEEVFSKYGRIE 206
Query: 120 DLYMPKDQRSKTHRGIGFITYANAD 144
D+Y+ +D + K RG GF+ Y++ D
Sbjct: 207 DVYLMRDDQ-KQSRGCGFVKYSHRD 230
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG +P+ AT ED+R F G++++V + +D K H+G F+ +A AD+ R
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 294 PH 295
H
Sbjct: 149 LH 150
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTF 52
KL V G+ WE + ++ Y +FGE+ + +V+ ++ TGRS+G+G+VTF
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTF 73
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E E +R YF +FG IL+ + D +G+GFVTF + A R +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 294 PHEI 297
P +
Sbjct: 86 PSPV 89
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTF 52
KL V G+ WE + ++ Y +FGE+ + +V+ ++ TGRS+G+G+VTF
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTF 73
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E E +R YF +FG IL+ + D +G+GFVTF + A R +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 294 PHEI 297
P +
Sbjct: 86 PSPV 89
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT---SVDDA 58
+ V G+ W D + L++ S++GE+ D ++ +R TGRSRGFG+VTF S++DA
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDA 63
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT---SVDDA 58
+ V G+ W D + L++ S++GE+ D ++ +R TGRSRGFG+VTF S++DA
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDA 63
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
KL V G+ W VD LK+ S FG++ + ++ ++ +GR+RGFG+V F++ D AK+
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKS 92
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
K+ V G+ WE ++ ++ Y +FG++ + +V+ ++ TGRS+G+G+VTF + A+ +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E +E +R+YF +FG IL+ + D +G+GFVTF + A R
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 294 PHEI 297
P +
Sbjct: 90 PSPV 93
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 111/284 (39%), Gaps = 55/284 (19%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
L + + +D L E S FG + C V + + G S+G G+V F + AKN +IE
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKN--AIE 171
Query: 66 HNLGNRMLEVKVA----TPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDL 121
G M + KV +E +P K +++ + S T + F +G IT +
Sbjct: 172 KLDGMLMNDKKVYVGYFVRCQERSSP--KFTNVYVKNLSESYTYEDLKQLFNSFGVITSV 229
Query: 122 YMPKDQRSKTHRGIGFITYANADS----VENLMKETHELEGSTVVVDRATPKEDDFKPIX 177
+ K + + GF+ + ++DS VE L T +G + V RA K +
Sbjct: 230 LIMKYDNGNS-KCFGFVNFQSSDSAATAVEKLNGSTTN-DGKVLFVGRAQKKSE------ 281
Query: 178 XXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFV 237
R A L A ++ R E + G +++
Sbjct: 282 ---------------------------REAELKA--FFEQEK--LKRYEKFQ--GANLYL 308
Query: 238 GHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTF 281
++ + E L++ F FG I + DA R +G GFV F
Sbjct: 309 KNIDKSLNEEKLKELFSEFGTITSCKVMSDA-RGRSKGVGFVAF 351
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
L + I ++ + LKE S+FG + C VM + A GRS+G G+V FT+ ++A + E
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSD-ARGRSKGVGFVAFTTPEEASKAID-E 363
Query: 66 HN---LGNRMLEVKVATPKEEMKAPVK 89
N +G + + V VA KEE KA ++
Sbjct: 364 MNGKIIGQKPVYVSVAQRKEERKAQLQ 390
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTF 52
+ V G+ W D++ L++ S++GE+ D ++ +R TGRSRGFG+VTF
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTF 56
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
K+ V G+ WE ++ ++ Y +FG++ + +V+ ++ TGRS+G+G+VTF + A+ +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E +E +R+YF +FG IL+ + D +G+GFVTF + A R
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 294 PHEIC 298
P +
Sbjct: 90 PSPVI 94
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 19/186 (10%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMS---KFGELEDCIVMKERATGR--SRGFGYVTFTSV 55
+E R L V + ++ + L+E+ S K G + V K G+ S GFG+V F S
Sbjct: 638 IEARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDST 697
Query: 56 DDAKNVLSIE-------HNLGNRMLEVKVATPKEEMKAPVKKVN-RIFIARIPPSVTEAT 107
+ A +V + H L ++ VK K + K K + ++ + + TE
Sbjct: 698 ETATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATEKD 757
Query: 108 FRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVEN---LMKETHELEGSTVVVD 164
R F +G I L +P + HRG F+ Y +N + TH L G +V++
Sbjct: 758 LRQLFSPFGQIKSLRLP--MKFGNHRGFAFVEYVTQQEAQNALTALSSTH-LYGRHLVIE 814
Query: 165 RATPKE 170
RA E
Sbjct: 815 RAKEGE 820
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+QR + +P + + E+ SK G++ D ++ +R + RS+G GY+ F DA +V
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY---DAMSV 269
Query: 62 -----LSIEHNLGN-----------RMLEVKVATPKEEMKAPVKKVNR-IFIARIPPSVT 104
LS + LG +++ T + P V+R +++ + ++T
Sbjct: 270 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMT 329
Query: 105 EATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE--GSTVV 162
E+ R FE +G + + +P D + +G GFI +A+ + + +LE G T+
Sbjct: 330 ESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIK 389
Query: 163 V 163
V
Sbjct: 390 V 390
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+QR + +P + + E+ SK G++ D ++ +R + RS+G GY+ F DA +V
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY---DAMSV 269
Query: 62 -----LSIEHNLGN-----------RMLEVKVATPKEEMKAPVKKVNR-IFIARIPPSVT 104
LS + LG +++ T + P V+R +++ + ++T
Sbjct: 270 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMT 329
Query: 105 EATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE--GSTVV 162
E+ R FE +G + + +P D + +G GFI +A+ + + +LE G T+
Sbjct: 330 ESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIK 389
Query: 163 V 163
V
Sbjct: 390 V 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+QR + +P + + E+ SK G++ D ++ +R + RS+G GY+ F DA +V
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY---DAMSV 269
Query: 62 -----LSIEHNLGN-----------RMLEVKVATPKEEMKAPVKKVNR-IFIARIPPSVT 104
LS + LG +++ T + P V+R +++ + ++T
Sbjct: 270 PMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMT 329
Query: 105 EATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE--GSTVV 162
E+ R FE +G + + +P D + +G GFI +A+ + + +LE G T+
Sbjct: 330 ESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIK 389
Query: 163 V 163
V
Sbjct: 390 V 390
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+ R+L V +P+ + + L + + G + ++ + T RSRGF +VT +V+DA+
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 62 LSI--EHNLGNRML-----EVKVATPKEEMKAP----VKKVNRIFIARIPPSVTEATFRS 110
+ + +G R + EV + + +M + V ++I+ + +T R
Sbjct: 166 IRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 111 HFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE 157
F K + + ++ + RG GF+++ A+ VE + + +E
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVE 272
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+ R+L V +P+ + + L + + G + ++ + T RSRGF +VT +V+DA+
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 62 LSI--EHNLGNRML-----EVKVATPKEEMKAP----VKKVNRIFIARIPPSVTEATFRS 110
+ + +G R + EV + + +M + V ++I+ + +T R
Sbjct: 166 IRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 111 HFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE 157
F K + + ++ + RG GF+++ A+ VE + + +E
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVE 272