Miyakogusa Predicted Gene
- Lj2g3v1875620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1875620.1 Non Characterized Hit- tr|C0HG16|C0HG16_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,44.17,3e-17,Remorin_C,Remorin, C-terminal; FAMILY NOT NAMED,NULL;
seg,NULL; coiled-coil,NULL,CUFF.37989.1
(427 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g017290.1 | carboxy-terminal region remorin | HC | chr5:63... 325 7e-89
Medtr1g019280.2 | carboxy-terminal region remorin | HC | chr1:57... 199 6e-51
Medtr1g019280.1 | carboxy-terminal region remorin | HC | chr1:57... 198 8e-51
Medtr8g023130.1 | carboxy-terminal region remorin | HC | chr8:82... 61 2e-09
Medtr1g052560.1 | carboxy-terminal region remorin | HC | chr1:21... 58 2e-08
Medtr8g080180.2 | carboxy-terminal region remorin | HC | chr8:34... 56 6e-08
Medtr8g080180.1 | carboxy-terminal region remorin | HC | chr8:34... 56 6e-08
Medtr8g031370.1 | carboxy-terminal region remorin | HC | chr8:11... 56 6e-08
Medtr7g091990.1 | carboxy-terminal region remorin | HC | chr7:36... 56 7e-08
Medtr8g079482.2 | carboxy-terminal region remorin | HC | chr8:34... 55 9e-08
Medtr8g079482.1 | carboxy-terminal region remorin | HC | chr8:34... 55 1e-07
Medtr1g100647.1 | carboxy-terminal region remorin | HC | chr1:45... 52 1e-06
>Medtr5g017290.1 | carboxy-terminal region remorin | HC |
chr5:6300645-6298442 | 20130731
Length = 404
Score = 325 bits (832), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 211/416 (50%), Positives = 271/416 (65%), Gaps = 47/416 (11%)
Query: 29 PGAPYYRERTRDHQNQKGWSSERV--SNSKLNNFSRRHTMSGLTPFNFIGGGRTMPSKWD 86
P P YRE+ + +NQKGW+SERV + +N R+ ++G++PFN GRT+PSKWD
Sbjct: 17 PKEPNYREK--NIENQKGWNSERVLLHPTTSSNIRRQAYVAGVSPFN---SGRTIPSKWD 71
Query: 87 EAERWICSPVSAAEXXXXXXXXXXXXXPKXXXXXXXXXXXXXXVAANFYSPGIQHRQGFV 146
+AERWICSPVS++ P +NF SP I R G V
Sbjct: 72 DAERWICSPVSSSGYVQHQRNPKSKSGP--------IVPQGTTYYSNF-SPTIPLRNGLV 122
Query: 147 VRNLMVGSPFSTGVLAPVAVSVHHYYDPHG------HDVDDGVSVYGCDIDNVGMQYAGP 200
V+NLM+ SPF+TGVLAP VS+ HYY PH +D+DD SV + G
Sbjct: 123 VKNLMMSSPFTTGVLAPDIVSLQHYY-PHDNLYGARYDIDDDSSV---------VNENGV 172
Query: 201 VHSSTSTVPMCSQL---PPSPLSTDEKHDVLKNEETLMSLSARCDKGTQMSPEESENDSH 257
H+S S P S+L P SP S DEK D KNE+T+MS ++ DKGTQMS E+EN+ H
Sbjct: 173 AHTSASNAPSWSELLSDPSSPNSHDEKFDGTKNEDTVMSPMSKIDKGTQMSSPETENEDH 232
Query: 258 SSRKSSTNSV-MDQQACHSPKLEVRDVQVDCQATVVRGSKRHSTKLTKKDSLHSTDSREN 316
SS KSS+ + M+ ++CHS KLE++DVQVDCQA V++ SK +++KL+ S + + +++
Sbjct: 233 SSPKSSSPILAMNPKSCHSEKLEIKDVQVDCQANVIKWSKSYASKLS---SFNGKELKKS 289
Query: 317 SAEAQVTCWDIEESTLD--NSKLQR-EEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSS 373
EA + DI E+T D +SK +R +EAKIIAWE+LQKAKAEAAIRKLEMKLEKK+SSS
Sbjct: 290 GTEA--SGLDIAETTSDTSSSKFERDDEAKIIAWESLQKAKAEAAIRKLEMKLEKKKSSS 347
Query: 374 MDKILNKLRRAQLKAENKRSVMPVQQ---VSKLCKVFSFPKYVQIWSPGTCFRSHA 426
MDKILNKLRRAQ+KAE RS+ PVQQ VSK KVFSF KY +IWSP +CF SHA
Sbjct: 348 MDKILNKLRRAQMKAEKMRSLTPVQQEQHVSKTWKVFSFTKYGKIWSPSSCFASHA 403
>Medtr1g019280.2 | carboxy-terminal region remorin | HC |
chr1:5781751-5777571 | 20130731
Length = 558
Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 204/431 (47%), Gaps = 79/431 (18%)
Query: 29 PGAPYYRERTRDHQNQKGWSSERVSNSKLNNFSRRHTMSGLTPFNFIGGGRTMPSKWDEA 88
PG P YR QKGWSSERV++ R+ +G+T + GRT+PSKW++A
Sbjct: 173 PGTPNYRHCQGGVAMQKGWSSERVASG-----GRKQVGNGVTAL-CLSNGRTLPSKWEDA 226
Query: 89 ERWICSPVSAAEXXXXXXXXXXXXXPKXXXXXXXXXXXXXXVAANFYSPGIQHRQGFVVR 148
ERWI SPVS + PK
Sbjct: 227 ERWILSPVSGGDGTGRVSVPQPLRRPKSK------------------------------- 255
Query: 149 NLMVGSPFSTGVLAPVAVSVHHYYDPHGHDVDDG-----VSVYGCDIDNVGMQYAG---- 199
+G L P V+ + Y P GH D G S + ++ +
Sbjct: 256 ---------SGPLGPPGVAYYSLYSPAGHFFDGGNFMTAASPFSAAVNASADGFTNSSGG 306
Query: 200 -----------PVHSSTSTVPMCSQL--PPSPLSTDEKHDVLKNEETLMSLS-ARCDKGT 245
P + + +V CSQ+ S S +EK D K+ T +S + +R D T
Sbjct: 307 NGGGGLPTRTDPCMARSVSVHGCSQMQGQSSIPSREEKFDAFKDAGTNVSPAVSRRDMAT 366
Query: 246 QMSPEESENDSHSSRKSSTNS------VMDQQACHSPKLEVRDVQVDCQATVVRGSKRHS 299
QMSPE S S + S + S V D Q+ K+++RDVQVD + T+ R SK+H
Sbjct: 367 QMSPEGSSCSSPNMMTSFSASIPPTLPVTDLQSISFSKMDIRDVQVDERVTMTRWSKKHK 426
Query: 300 TKLTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAI 359
T + S + ++ + + W+I E + SK +REEAKI AWENLQKAKAEAAI
Sbjct: 427 ALFTGRGSENVDSWKKKETSTRSSSWEISERSKTVSKAKREEAKITAWENLQKAKAEAAI 486
Query: 360 RKLEMKLEKKRSSSMDKILNKLRRAQLKAENKRSVMPVQQVSKLC----KVFSFPKYVQI 415
+KLEMKLEKKR+SSMDKI+NKL+ AQ KA+ RS + V Q ++ KV SF + Q+
Sbjct: 487 QKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVSVDQAHQVARTSHKVMSFRRAGQM 546
Query: 416 WSPGTCFRSHA 426
S CF HA
Sbjct: 547 GSLSGCFTCHA 557
>Medtr1g019280.1 | carboxy-terminal region remorin | HC |
chr1:5782200-5777571 | 20130731
Length = 620
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 204/431 (47%), Gaps = 79/431 (18%)
Query: 29 PGAPYYRERTRDHQNQKGWSSERVSNSKLNNFSRRHTMSGLTPFNFIGGGRTMPSKWDEA 88
PG P YR QKGWSSERV++ R+ +G+T + GRT+PSKW++A
Sbjct: 235 PGTPNYRHCQGGVAMQKGWSSERVASG-----GRKQVGNGVTAL-CLSNGRTLPSKWEDA 288
Query: 89 ERWICSPVSAAEXXXXXXXXXXXXXPKXXXXXXXXXXXXXXVAANFYSPGIQHRQGFVVR 148
ERWI SPVS + PK
Sbjct: 289 ERWILSPVSGGDGTGRVSVPQPLRRPKSK------------------------------- 317
Query: 149 NLMVGSPFSTGVLAPVAVSVHHYYDPHGHDVDDG-----VSVYGCDIDNVGMQYAG---- 199
+G L P V+ + Y P GH D G S + ++ +
Sbjct: 318 ---------SGPLGPPGVAYYSLYSPAGHFFDGGNFMTAASPFSAAVNASADGFTNSSGG 368
Query: 200 -----------PVHSSTSTVPMCSQL--PPSPLSTDEKHDVLKNEETLMSLS-ARCDKGT 245
P + + +V CSQ+ S S +EK D K+ T +S + +R D T
Sbjct: 369 NGGGGLPTRTDPCMARSVSVHGCSQMQGQSSIPSREEKFDAFKDAGTNVSPAVSRRDMAT 428
Query: 246 QMSPEESENDSHSSRKSSTNS------VMDQQACHSPKLEVRDVQVDCQATVVRGSKRHS 299
QMSPE S S + S + S V D Q+ K+++RDVQVD + T+ R SK+H
Sbjct: 429 QMSPEGSSCSSPNMMTSFSASIPPTLPVTDLQSISFSKMDIRDVQVDERVTMTRWSKKHK 488
Query: 300 TKLTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAI 359
T + S + ++ + + W+I E + SK +REEAKI AWENLQKAKAEAAI
Sbjct: 489 ALFTGRGSENVDSWKKKETSTRSSSWEISERSKTVSKAKREEAKITAWENLQKAKAEAAI 548
Query: 360 RKLEMKLEKKRSSSMDKILNKLRRAQLKAENKRSVMPVQQVSKLC----KVFSFPKYVQI 415
+KLEMKLEKKR+SSMDKI+NKL+ AQ KA+ RS + V Q ++ KV SF + Q+
Sbjct: 549 QKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVSVDQAHQVARTSHKVMSFRRAGQM 608
Query: 416 WSPGTCFRSHA 426
S CF HA
Sbjct: 609 GSLSGCFTCHA 619
>Medtr8g023130.1 | carboxy-terminal region remorin | HC |
chr8:8275146-8279407 | 20130731
Length = 463
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 242 DKGTQMSPEESENDS--HSSRKSSTNSVMDQQACHSPKLEVRDVQVD-CQATVVRGSKRH 298
D GT+M+P S S H+ KSS+ + + A S L + ++ + C ++ + H
Sbjct: 244 DVGTEMTPLGSSTTSRCHTPFKSSSPARHNTPASRSGPLALSNIDSNGCSVDAIQLEECH 303
Query: 299 STKL----TKKD------------------SLHSTDSRENSAEAQVTCWDIEESTLDNSK 336
+KL TK D SL S + ++ W+ +E +
Sbjct: 304 FSKLQFGTTKYDLVAPNWSSSEEEEKEISKSLRHNASLKADSDCIAASWEEDEKNKCCLR 363
Query: 337 LQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKILNKLRRAQLKAENKRSVMP 396
QREEAKI AW NLQ AKAEA +KLE+K++K RS+ +K++ ++ KAE+ R
Sbjct: 364 YQREEAKIQAWINLQNAKAEARSKKLEVKIQKMRSNLEEKLMKRMSVVHRKAEDWRETAR 423
Query: 397 VQQVSKL 403
Q + ++
Sbjct: 424 QQHLEQM 430
>Medtr1g052560.1 | carboxy-terminal region remorin | HC |
chr1:21429641-21426963 | 20130731
Length = 273
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 60/106 (56%)
Query: 319 EAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIL 378
E+++ W + N++ +RE+A I WEN Q KA + + K+E KLE+KR+ +++K+
Sbjct: 166 ESKIAAWQNAKVAKVNNRFKREDAVINGWENEQVQKANSWMMKVERKLEEKRAKALEKMQ 225
Query: 379 NKLRRAQLKAENKRSVMPVQQVSKLCKVFSFPKYVQIWSPGTCFRS 424
N + +A KA+ KR+ ++ +K+ +V +++ RS
Sbjct: 226 NDVAKAHRKAQEKRASAEAKRGTKISRVLEIANLMRVVGRAPSKRS 271
>Medtr8g080180.2 | carboxy-terminal region remorin | HC |
chr8:34442403-34445750 | 20130731
Length = 361
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 301 KLTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIR 360
K+ +K+ + + + E++ WD E ++ +REE KI AWEN Q KAE ++
Sbjct: 228 KMVEKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREEMKIQAWENHQIRKAEMEMK 287
Query: 361 KLEMKLEKKRSSSMDKILNKLRRAQLKAENKRSVMPVQ 398
K+E+K E+ ++ + +K+ NKL + AE KR+ V+
Sbjct: 288 KMEVKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVK 325
>Medtr8g080180.1 | carboxy-terminal region remorin | HC |
chr8:34442437-34445750 | 20130731
Length = 361
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 301 KLTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIR 360
K+ +K+ + + + E++ WD E ++ +REE KI AWEN Q KAE ++
Sbjct: 228 KMVEKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREEMKIQAWENHQIRKAEMEMK 287
Query: 361 KLEMKLEKKRSSSMDKILNKLRRAQLKAENKRSVMPVQ 398
K+E+K E+ ++ + +K+ NKL + AE KR+ V+
Sbjct: 288 KMEVKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVK 325
>Medtr8g031370.1 | carboxy-terminal region remorin | HC |
chr8:11753967-11749805 | 20130731
Length = 200
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 322 VTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKILNKL 381
V W+ E T +K Q++ + + AWEN +KA EA +RK+E +LEKK++ +KI NK+
Sbjct: 95 VKAWEDSEKTKAENKAQKQLSTVAAWENSKKAALEAQLRKIEEQLEKKKAEYGEKIKNKV 154
Query: 382 RRAQLKAENKRSVMPVQQVSKLCK 405
+AE KR+++ Q+ + K
Sbjct: 155 AMVHKQAEEKRAIVEAQRAEAILK 178
>Medtr7g091990.1 | carboxy-terminal region remorin | HC |
chr7:36403616-36400654 | 20130731
Length = 279
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 70/121 (57%)
Query: 294 GSKRHSTKLTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKA 353
GS R S + ++ + ++ +A+++ W + N++ +R++A I WE+ Q
Sbjct: 147 GSSRASGQGGSEEHVSVDRVKKEEVDAKISAWQNAKVAKINNRFKRDDAVINGWESEQVQ 206
Query: 354 KAEAAIRKLEMKLEKKRSSSMDKILNKLRRAQLKAENKRSVMPVQQVSKLCKVFSFPKYV 413
KA + ++K+E KLE+KR+ +++K NK+ +A+ KAE +++ ++ +K+ +V +
Sbjct: 207 KATSWMKKVERKLEEKRARALEKTQNKIAKARRKAEERKASAEAKRGTKVARVLEIANLM 266
Query: 414 Q 414
+
Sbjct: 267 R 267
>Medtr8g079482.2 | carboxy-terminal region remorin | HC |
chr8:34063857-34067628 | 20130731
Length = 438
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%)
Query: 319 EAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIL 378
E + W+ E + ++L+REE +I AWE+ QKAK EA +R+ E K+E+ R+ + K++
Sbjct: 326 EKRAALWEEAEKSKHTARLKREEIQIQAWESQQKAKLEAEMRRTEAKVEQMRAQTHAKMV 385
Query: 379 NKLRRAQLKAENKRS 393
K+ A+ +++ KR+
Sbjct: 386 KKIAMARQRSDEKRA 400
>Medtr8g079482.1 | carboxy-terminal region remorin | HC |
chr8:34063857-34067628 | 20130731
Length = 528
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%)
Query: 319 EAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIL 378
E + W+ E + ++L+REE +I AWE+ QKAK EA +R+ E K+E+ R+ + K++
Sbjct: 416 EKRAALWEEAEKSKHTARLKREEIQIQAWESQQKAKLEAEMRRTEAKVEQMRAQTHAKMV 475
Query: 379 NKLRRAQLKAENKRS 393
K+ A+ +++ KR+
Sbjct: 476 KKIAMARQRSDEKRA 490
>Medtr1g100647.1 | carboxy-terminal region remorin | HC |
chr1:45590830-45593341 | 20130731
Length = 209
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 322 VTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKILNKL 381
+ W+ E + +K QR + I AWEN +KA EA +RKLE +LEKK+ +K+ NK+
Sbjct: 104 IKAWEESEKSKAENKAQRRLSTITAWENSKKAAKEAELRKLEEQLEKKKGEYAEKLKNKI 163
Query: 382 RRAQLKAENKRSVMPVQQVSKLCKV 406
AE K++++ ++ L K
Sbjct: 164 AALHKAAEEKKAMIEAKKGEDLLKA 188