Miyakogusa Predicted Gene

Lj2g3v1873570.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1873570.2 Non Characterized Hit- tr|H2R136|H2R136_PANTR
Uncharacterized protein OS=Pan troglodytes
GN=ENSG0000,38.24,2e-18,UNKNOWN PROTEIN,NULL; SPLICING FACTOR
(SUPPRESSOR OF WHITE APRICOT),NULL; coiled-coil,NULL;
DRY_EERY,CUFF.38006.2
         (549 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g017430.1 | arginine/serine-rich splicing factor | HC | ch...   546   e-155

>Medtr5g017430.1 | arginine/serine-rich splicing factor | HC |
           chr5:6362508-6356106 | 20130731
          Length = 622

 Score =  546 bits (1407), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 303/459 (66%), Positives = 315/459 (68%), Gaps = 10/459 (2%)

Query: 1   MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPQQSIQLVGFRSRTYRDDALYQAT 60
           MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDP QSIQ+VG RSR YRDDALYQAT
Sbjct: 1   MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPMQSIQVVGSRSRAYRDDALYQAT 60

Query: 61  QDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSHRRVQXXXXXXXXXXXFVNFERYRDLI 120
           +DQQGLIPWNGKQDILIDRFDGRALLDFIRDSS RRVQ           FVNFERYRDLI
Sbjct: 61  EDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSFRRVQEKSEEEEELEEFVNFERYRDLI 120

Query: 121 KHRRRGFTDEEALQHVNQEMEAKSALPFMSDRSNLPQPAANKGSYSQVGFSYGGNGKXXX 180
           KHRRRGFTDE+ALQHVN EMEAK+A PF SDRSN+ QPAA KGSYSQVGFSY GNGK   
Sbjct: 121 KHRRRGFTDEDALQHVNLEMEAKAAAPFASDRSNVSQPAATKGSYSQVGFSYDGNGK--- 177

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEIIAKEFGVKRYGWLVYMDXXXXXXXX 240
                                          GMEIIAKE+GVKRYGWLVYMD        
Sbjct: 178 -EESQISDDDDEEDEDDEDDEDFNSDDSNDEGMEIIAKEYGVKRYGWLVYMDKKAKEEQK 236

Query: 241 XXXXMIKGDPAIRKLSRKERRKASQIXXXXXXXSTRVSGTRVLHHDPYREPRRSPTYEAX 300
               +IKGDPAIRKLSRKERRKASQ+       +TR+ GTRVLHHDPYRE R+SPTYEA 
Sbjct: 237 RQKEIIKGDPAIRKLSRKERRKASQVEREREREATRIPGTRVLHHDPYRESRQSPTYEAY 296

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXKPGTPKIEYITEFGGSGETAEPRREGF 358
                                            K  TPKIEYITEFGGSGE    RREGF
Sbjct: 297 SRSRRSRSRSRSYSPSYARRYSRSSHFDDILRNKSKTPKIEYITEFGGSGEADGTRREGF 356

Query: 359 SPPRSPPSHVDMLNRSSSGCILEALHVDPASGVSIDKDKGTKVWKPSVSTXXXXXXXXXX 418
           SPPRSP S VD LNRSSSGCILEALHVDPASGVSI  DKG KV KP VST          
Sbjct: 357 SPPRSPTSRVDTLNRSSSGCILEALHVDPASGVSI--DKGAKVLKPPVSTPSGSALAKLK 414

Query: 419 XXXXP--LKPLQGEKKETPQERLKRIMNRQLTKQIKKDT 455
                  LKP  GEKKETPQERLKRIMN+QL KQIKKDT
Sbjct: 415 ASGSGGILKPQPGEKKETPQERLKRIMNKQLNKQIKKDT 453