Miyakogusa Predicted Gene

Lj2g3v1779750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1779750.1 tr|B9MXR2|B9MXR2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_796816 PE=4
SV=1,71.15,0,SUBFAMILY NOT NAMED,NULL; SERINE/THREONINE-PROTEIN KINASE
RIO,NULL; ZINC_FINGER_C2H2_2,Zinc finger, ,CUFF.37819.1
         (502 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g099990.1 | C2H2-type zinc finger protein | HC | chr2:4289...   315   9e-86
Medtr8g017210.1 | C2H2-like zinc finger protein, putative | HC |...   311   7e-85
Medtr1g094115.2 | C2H2 zinc finger protein, putative | HC | chr1...   302   4e-82
Medtr1g112270.2 | C2H2 zinc finger protein, putative | HC | chr1...   298   6e-81
Medtr4g059870.1 | C2H2 and C2HC zinc finger protein, putative | ...   296   3e-80
Medtr1g016010.1 | C2H2-type zinc finger protein | HC | chr1:4158...   292   5e-79
Medtr2g090745.1 | C2H2-like zinc finger protein, putative | HC |...   290   2e-78
Medtr1g112270.1 | C2H2 zinc finger protein, putative | HC | chr1...   290   3e-78
Medtr2g093960.1 | C2H2-type zinc finger protein | LC | chr2:4003...   283   2e-76
Medtr2g099990.2 | C2H2-type zinc finger protein | HC | chr2:4289...   275   9e-74
Medtr1g094115.1 | C2H2 zinc finger protein, putative | HC | chr1...   256   3e-68
Medtr2g017720.1 | F-box associated protein | LC | chr2:5437660-5...   192   5e-49
Medtr3g102000.1 | hypothetical protein | LC | chr3:46988766-4698...   136   4e-32
Medtr5g030560.1 | C2H2-like zinc finger protein, putative | HC |...    90   5e-18
Medtr1g093095.1 | C2H2-type zinc finger protein | HC | chr1:4193...    70   5e-12

>Medtr2g099990.1 | C2H2-type zinc finger protein | HC |
           chr2:42897047-42899888 | 20130731
          Length = 468

 Score =  315 bits (806), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 137/161 (85%), Positives = 146/161 (90%)

Query: 40  RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSS 99
           RNLPG PDP AEVIALSPKTLMATNRF+CEICNKGFQRDQNLQLH+RGHNLPWKL+QR+S
Sbjct: 49  RNLPGNPDPQAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTS 108

Query: 100 KEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKA 159
            E+RK+VYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGE           YAVQSDWKA
Sbjct: 109 NEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKA 168

Query: 160 HSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARS 200
           HSK CGTREY+CDCGTLFSRRDSFITHRAFCDALAEES+R+
Sbjct: 169 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRT 209


>Medtr8g017210.1 | C2H2-like zinc finger protein, putative | HC |
           chr8:5790010-5786899 | 20130731
          Length = 517

 Score =  311 bits (798), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 148/166 (89%)

Query: 40  RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSS 99
           RNLPG PDPDAEVIA+SPK+L+A NRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+S
Sbjct: 65  RNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 124

Query: 100 KEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKA 159
           KE+RK+VYVCPEPTCVHHDPSRALGDLTGIKKHF RKHGE           YAVQSDWKA
Sbjct: 125 KEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKA 184

Query: 160 HSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSHPQSA 205
           HSK CGTREY+CDCGTLFSRRDSFITHRAFCDALAEESAR+   +A
Sbjct: 185 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNNA 230


>Medtr1g094115.2 | C2H2 zinc finger protein, putative | HC |
           chr1:42286106-42289867 | 20130731
          Length = 539

 Score =  302 bits (774), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 131/162 (80%), Positives = 143/162 (88%)

Query: 40  RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSS 99
           RN PG P+PDAEVIALSPKTLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL+Q+S+
Sbjct: 50  RNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSN 109

Query: 100 KEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKA 159
           KE R++VY+CPEPTCVHHDPSRALGDLTGIKKHF RKHGE           YAVQSDWKA
Sbjct: 110 KEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKA 169

Query: 160 HSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSH 201
           HSK CGTREY+CDCGTLFSRRDSFITHRAFCDALA+ES   H
Sbjct: 170 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVLRH 211


>Medtr1g112270.2 | C2H2 zinc finger protein, putative | HC |
           chr1:50790900-50782752 | 20130731
          Length = 571

 Score =  298 bits (764), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 129/165 (78%), Positives = 144/165 (87%)

Query: 40  RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSS 99
           RN PG P+PDAEVIALSPKTLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL+Q+++
Sbjct: 47  RNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTT 106

Query: 100 KEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKA 159
           KE +++VY+CPEPTCVHHDPSRALGDLTGIKKH+ RKHGE           YAVQSDWKA
Sbjct: 107 KEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKA 166

Query: 160 HSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSHPQS 204
           HSK CGTREY+CDCGTLFSRRDSFITHRAFCDALA+E  R  P S
Sbjct: 167 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPIS 211


>Medtr4g059870.1 | C2H2 and C2HC zinc finger protein, putative | HC
           | chr4:22086566-22083892 | 20130731
          Length = 495

 Score =  296 bits (758), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 127/161 (78%), Positives = 145/161 (90%), Gaps = 1/161 (0%)

Query: 40  RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSS 99
           RNLPG PDP++EV+A+SPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR++
Sbjct: 41  RNLPGTPDPESEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRAN 100

Query: 100 K-EVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWK 158
           K ++RK+VYVCPE TCVHH+PSRALGDLTGIKKH+ RKHGE           YAVQSDWK
Sbjct: 101 KDQIRKKVYVCPEKTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWK 160

Query: 159 AHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAR 199
           AHSKICGTREYKCDCGT+FSR+DSFITHRAFCDAL E+SA+
Sbjct: 161 AHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEQSAK 201


>Medtr1g016010.1 | C2H2-type zinc finger protein | HC |
           chr1:4158857-4161721 | 20130731
          Length = 452

 Score =  292 bits (748), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 143/160 (89%), Gaps = 1/160 (0%)

Query: 40  RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSS 99
           RNLPG PDP+A+V+ALSP+TL+ATNRF+CEICNKGFQRDQNLQLH+RGHNLPWKL++R+ 
Sbjct: 44  RNLPGHPDPEAQVLALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNV 103

Query: 100 KEV-RKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWK 158
            E+ RK+VYVCPEPTCVHHDPSRALGDLTGIKKHF RKHGE           YAVQSDWK
Sbjct: 104 NEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWK 163

Query: 159 AHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESA 198
           AHSKICGT+EYKCDCGTLFSRRDSFITHRAFCD L++ESA
Sbjct: 164 AHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESA 203


>Medtr2g090745.1 | C2H2-like zinc finger protein, putative | HC |
           chr2:38896799-38894235 | 20130731
          Length = 429

 Score =  290 bits (742), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 127/153 (83%), Positives = 137/153 (89%)

Query: 47  DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRV 106
           +P+AEVI+LSPKTLMATNRFVCEIC K FQRDQNLQLHRRGHNLPWKL+QR+SKE+RKRV
Sbjct: 17  NPEAEVISLSPKTLMATNRFVCEICLKDFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKRV 76

Query: 107 YVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGT 166
           YVCPE TCVH+ PSRALGDLTGIKKHFCRKHGE           YAVQSDWKAHSK CGT
Sbjct: 77  YVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGT 136

Query: 167 REYKCDCGTLFSRRDSFITHRAFCDALAEESAR 199
           REYKCDCGT+FSRRDSF+THRAFCDALAEE+AR
Sbjct: 137 REYKCDCGTIFSRRDSFVTHRAFCDALAEETAR 169


>Medtr1g112270.1 | C2H2 zinc finger protein, putative | HC |
           chr1:50789869-50782797 | 20130731
          Length = 582

 Score =  290 bits (741), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 143/176 (81%), Gaps = 11/176 (6%)

Query: 40  RNLPGMPD-----------PDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGH 88
           RN PG P            PDAEVIALSPKTLMATNRF+CE+CNKGFQR+QNLQLHRRGH
Sbjct: 47  RNQPGTPSKFLNYFIANLYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGH 106

Query: 89  NLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXX 148
           NLPWKL+Q+++KE +++VY+CPEPTCVHHDPSRALGDLTGIKKH+ RKHGE         
Sbjct: 107 NLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCS 166

Query: 149 XXYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSHPQS 204
             YAVQSDWKAHSK CGTREY+CDCGTLFSRRDSFITHRAFCDALA+E  R  P S
Sbjct: 167 KKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPIS 222


>Medtr2g093960.1 | C2H2-type zinc finger protein | LC |
           chr2:40039886-40042385 | 20130731
          Length = 414

 Score =  283 bits (725), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 141/161 (87%), Gaps = 1/161 (0%)

Query: 40  RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSS 99
           R+LPG PDPD+EVIALSPK+LM +NRF+CE+CNKGF+RDQNLQLHRRGHNLPWKL+QR+ 
Sbjct: 35  RSLPGTPDPDSEVIALSPKSLMTSNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNK 94

Query: 100 KEV-RKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWK 158
            EV RK+VYVCPE +CVHHDPSRALGDLTGIKKHF RKHGE           YAVQSDWK
Sbjct: 95  LEVIRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWK 154

Query: 159 AHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAR 199
           AHSKICGT+EY+CDCGTLFSR+DSF+THRAFC++L E SAR
Sbjct: 155 AHSKICGTKEYRCDCGTLFSRKDSFLTHRAFCESLVEGSAR 195


>Medtr2g099990.2 | C2H2-type zinc finger protein | HC |
           chr2:42897047-42899888 | 20130731
          Length = 399

 Score =  275 bits (702), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 118/140 (84%), Positives = 127/140 (90%)

Query: 61  MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPS 120
           MATNRF+CEICNKGFQRDQNLQLH+RGHNLPWKL+QR+S E+RK+VYVCPEPTCVHHDPS
Sbjct: 1   MATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTSNEIRKKVYVCPEPTCVHHDPS 60

Query: 121 RALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGTLFSRR 180
           RALGDLTGIKKHFCRKHGE           YAVQSDWKAHSK CGTREY+CDCGTLFSRR
Sbjct: 61  RALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 120

Query: 181 DSFITHRAFCDALAEESARS 200
           DSFITHRAFCDALAEES+R+
Sbjct: 121 DSFITHRAFCDALAEESSRT 140


>Medtr1g094115.1 | C2H2 zinc finger protein, putative | HC |
           chr1:42286195-42289752 | 20130731
          Length = 522

 Score =  256 bits (654), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 108/137 (78%), Positives = 120/137 (87%)

Query: 65  RFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALG 124
           +F+CE+CNKGFQR+QNLQLHRRGHNLPWKL+Q+S+KE R++VY+CPEPTCVHHDPSRALG
Sbjct: 58  KFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALG 117

Query: 125 DLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFI 184
           DLTGIKKHF RKHGE           YAVQSDWKAHSK CGTREY+CDCGTLFSRRDSFI
Sbjct: 118 DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFI 177

Query: 185 THRAFCDALAEESARSH 201
           THRAFCDALA+ES   H
Sbjct: 178 THRAFCDALAQESVLRH 194


>Medtr2g017720.1 | F-box associated protein | LC |
           chr2:5437660-5435484 | 20130731
          Length = 432

 Score =  192 bits (489), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 97/120 (80%), Gaps = 5/120 (4%)

Query: 42  LPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKE 101
           L    DP+AEVI+LSPK LMATNRFVCEIC K FQRDQNLQLHRRGHNLPWKL+QR+SK+
Sbjct: 318 LYAHADPEAEVISLSPKPLMATNRFVCEICLKDFQRDQNLQLHRRGHNLPWKLKQRTSKK 377

Query: 102 VRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKAHS 161
           +RKRVYVCPE   VH+ PSRALGDLTGIKKHFCRKHGE           Y VQSDWKAHS
Sbjct: 378 IRKRVYVCPEKIRVHNHPSRALGDLTGIKKHFCRKHGE-----KKCSKFYVVQSDWKAHS 432


>Medtr3g102000.1 | hypothetical protein | LC |
           chr3:46988766-46986877 | 20130731
          Length = 226

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 74/99 (74%), Gaps = 7/99 (7%)

Query: 64  NRFVCEICNKG----FQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDP 119
           NR+V ++        FQR+QNLQLHRRG+NLPWKL+QR+SKE+RKRVYVCPE T VH+ P
Sbjct: 36  NRYVIKLYAHAHPEDFQRNQNLQLHRRGYNLPWKLKQRTSKEIRKRVYVCPEKTRVHNHP 95

Query: 120 SRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWK 158
           SRALGDLTGIKKHFCR H E           YAVQSDWK
Sbjct: 96  SRALGDLTGIKKHFCRNHSE---NKWKCSKFYAVQSDWK 131


>Medtr5g030560.1 | C2H2-like zinc finger protein, putative | HC |
          chr5:12937715-12939520 | 20130731
          Length = 81

 Score = 90.1 bits (222), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/45 (86%), Positives = 42/45 (93%)

Query: 47 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLP 91
          DP+AEVI+LSPK LMATNRFVCEIC K FQRDQNLQLHRRG+NLP
Sbjct: 16 DPEAEVISLSPKPLMATNRFVCEICLKDFQRDQNLQLHRRGYNLP 60


>Medtr1g093095.1 | C2H2-type zinc finger protein | HC |
           chr1:41939075-41940250 | 20130731
          Length = 294

 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 58  KTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK-----LR----QRSSKEVRKRVYV 108
           + L+   +F C +CNK F R  N+Q+H  GH   ++     L+      SS  ++   Y 
Sbjct: 107 QILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYC 166

Query: 109 CPEPTC---VHHDPSRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDWKAHSKICG 165
           C E  C   +++  +R L D   ++ H+ RKHG            +AV+ DW+ H K CG
Sbjct: 167 CAE-GCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCG 225

Query: 166 TREYKCDCGTLFSRRDSFITH-RAFCDALAEESARS 200
            + + C CG+ F  + S   H RAF +  A  +  S
Sbjct: 226 -KLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLES 260