Miyakogusa Predicted Gene

Lj2g3v1768680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1768680.1 tr|Q18KT7|Q18KT7_HALWD Transcription initiation
factor IIB OS=Haloquadratum walsbyi (strain DSM
1679,33.62,0.0000000004,TRANSCRIPTION INITIATION FACTOR IIB,NULL;
TRANSCRIPTION INITIATION FACTOR IIB-RELATED,Transcription
,gene.g42231.t1.1
         (219 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g019910.1 | transcription factor IIB | HC | chr5:7553976-7...   373   e-104
Medtr3g040300.1 | transcription initiation factor IIB | HC | chr...    49   5e-06

>Medtr5g019910.1 | transcription factor IIB | HC |
           chr5:7553976-7558232 | 20130731
          Length = 487

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/217 (85%), Positives = 198/217 (91%), Gaps = 2/217 (0%)

Query: 1   MEERQSHPHHVFHLRAQDNPLCLATSDLPLPTLHHQN-DAGDEEDPFEPTGFLTAFSTWS 59
           +EERQSHPHH+FHLRAQDNPLCL T DLP PTL+  N D  +EEDPFEPTGF+TAFSTWS
Sbjct: 32  VEERQSHPHHIFHLRAQDNPLCLVTPDLPPPTLNQTNTDTNEEEDPFEPTGFITAFSTWS 91

Query: 60  LEPSPLYLQSSIAFSGHLAELERTLEXXXXXXATVVV-DNLRAYMQIIDVASILGLDCDI 118
           LEPSPLYLQSS++FSG+LAELERTLE      ++ VV DNLRAYMQIIDV+SILGL+ DI
Sbjct: 92  LEPSPLYLQSSLSFSGYLAELERTLESSSTNSSSSVVVDNLRAYMQIIDVSSILGLESDI 151

Query: 119 SDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEISIAANVPQKEIGKY 178
           SDHAFQLFRDCCSATCLRNRSVEALATAALV AIREAQEPRTLQEISIAANV QKEIGKY
Sbjct: 152 SDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVAQKEIGKY 211

Query: 179 IKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 215
           IKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ
Sbjct: 212 IKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 248


>Medtr3g040300.1 | transcription initiation factor IIB | HC |
           chr3:14150000-14150812 | 20130731
          Length = 270

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 105 IIDVAS-ILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQE 163
           IID  +  LGL   I D A ++++   +    + R+ +AL  A L  A R+  +P T++E
Sbjct: 68  IIDTMTEKLGLVPTIKDRAIEIYKLVANQKYSKARNQDALLAACLYIACRQEDKPHTVKE 127

Query: 164 I-SIAANVPQKEIGKYIKILGEALQL-----SQPINSNSISVHMPRFCTLLQLNKSA 214
           I SIA    +KEIG+  + + + L L     S  + +  I   M RFC+ L +N  A
Sbjct: 128 ISSIAIGATKKEIGRAKQYIMKQLALENGGQSVEMGTTHIGDFMGRFCSNLGMNHQA 184