Miyakogusa Predicted Gene

Lj2g3v1758490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1758490.1 Non Characterized Hit- tr|I1J8V2|I1J8V2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18802 PE,90.83,0,domain
present in cyclins, TFIIB and Retinob,Cyclin-like; TRANSCRIPTION
INITIATION FACTOR IIB,NULL; ,CUFF.37990.1
         (346 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g019910.1 | transcription factor IIB | HC | chr5:7553976-7...   613   e-176
Medtr7g091230.1 | transcription initiation factor IIB | HC | chr...    96   7e-20
Medtr1g053065.1 | transcription initiation factor IIB | HC | chr...    94   2e-19
Medtr3g037190.1 | transcription initiation factor IIB | HC | chr...    92   9e-19
Medtr3g040300.1 | transcription initiation factor IIB | HC | chr...    91   2e-18
Medtr3g040150.1 | transcription initiation factor IIB | HC | chr...    89   5e-18

>Medtr5g019910.1 | transcription factor IIB | HC |
           chr5:7553976-7558232 | 20130731
          Length = 487

 Score =  613 bits (1581), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 302/342 (88%), Positives = 319/342 (93%), Gaps = 2/342 (0%)

Query: 6   MKCPYCSAAAGRCATTSSGRSITECTSCGRVMEERQSHPHHVFHLRAQDNPLCLATSDLP 65
           MKCPYCSAA GRC TT++G+SITECTSCGRV+EERQSHPHH+FHLRAQDNPLCL T DLP
Sbjct: 1   MKCPYCSAAQGRCTTTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTPDLP 60

Query: 66  LPTLHHQN-DAGDEEDPFEPTGFLTAFSTWSLEPSPLYLQSSIAFSGHLAELERTLEXXX 124
            PTL+  N D  +EEDPFEPTGF+TAFSTWSLEPSPLYLQSS++FSG+LAELERTLE   
Sbjct: 61  PPTLNQTNTDTNEEEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGYLAELERTLESSS 120

Query: 125 XXXATVVV-DNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAA 183
              ++ VV DNLRAYMQIIDV+SILGL+ DISDHAFQLFRDCCSATCLRNRSVEALATAA
Sbjct: 121 TNSSSSVVVDNLRAYMQIIDVSSILGLESDISDHAFQLFRDCCSATCLRNRSVEALATAA 180

Query: 184 LVHAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 243
           LV AIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL
Sbjct: 181 LVQAIREAQEPRTLQEISIAANVAQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTL 240

Query: 244 LQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 303
           LQLNKSAQELATHIG+VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT
Sbjct: 241 LQLNKSAQELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 300

Query: 304 EVTLRKVYKELLENWDDLLPSNYTPAVPPEWAFPTTVIASVR 345
           EVTLRKVYKELLENWDDLLPSNYTPAVPPE AFPTT+IAS R
Sbjct: 301 EVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTLIASGR 342


>Medtr7g091230.1 | transcription initiation factor IIB | HC |
           chr7:36014917-36009852 | 20130731
          Length = 313

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 8/196 (4%)

Query: 137 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRT 196
           A+  I  +A  LGL   I D A ++++        R R+ +AL  A L  A R+  +PRT
Sbjct: 108 AFKTIGTMAERLGLVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167

Query: 197 LQEI-SIAANVPQKEIGKYIKILGEALQL---SQPINSNSISV--HMPRFCTLLQLNKSA 250
           ++EI SIA    +KEIG+  + + + L L    Q +   +I     M RFC+ L +N  A
Sbjct: 168 VKEICSIANGATKKEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQA 227

Query: 251 QELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 310
            + A     V  ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+R  
Sbjct: 228 VKAAQE--SVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNS 285

Query: 311 YKELLENWDDLLPSNY 326
           YK+L  +   ++P+ Y
Sbjct: 286 YKDLYPHVSKIIPNWY 301


>Medtr1g053065.1 | transcription initiation factor IIB | HC |
           chr1:22093097-22088892 | 20130731
          Length = 312

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 142/316 (44%), Gaps = 49/316 (15%)

Query: 28  TECTSCGRVMEER---QSHPHHVFHLRAQDN-PLCLATSDLPLPTLHHQNDAGDEEDPFE 83
           T C+ CG V+E     ++     F   + DN P  + ++  PL       D G      +
Sbjct: 24  TVCSECGLVLESHSIDETFEWRTFANESNDNDPNRVGSASNPL-----LKDGGLSTYIAK 78

Query: 84  PTGFLTAFSTWSLEPSPLYLQSSIAFSGHLAELERTLEXXXXXXATVVVDNLRAYMQIID 143
           P G  + F    L P+   LQ+    S H    +RTL              L A+  I  
Sbjct: 79  PNGSSSEF----LSPTLNRLQNRA--SNH----DRTL--------------LLAFKNITT 114

Query: 144 VASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEI-SI 202
           +A  L L   I D A ++++        R R+ +AL  A +  A R+ ++PRT++EI S+
Sbjct: 115 MAERLDLATFIKDRANEIYKRVEDQKSSRGRNQDALLAACIYIACRQEEKPRTVKEICSV 174

Query: 203 AANVPQKEIGK----YIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIG 258
           A    +KEIG+     +K LG     S  + + +    M RFC+ + LN  A++ A    
Sbjct: 175 ANGATKKEIGRAKEYIVKQLGLDNGQSMEMGTINAGDFMRRFCSTIDLNNQARKAAMEA- 233

Query: 259 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENW 318
            V  ++ F  RR+PI+I+AA IY+  QL   +K    I  VTG+ E T++  YK      
Sbjct: 234 -VKKSEEFDIRRSPITIAAAVIYIISQLSGDKKPLKTISIVTGVAEGTIKGSYK------ 286

Query: 319 DDLLPSNYTPAVPPEW 334
            DL P  Y   + P W
Sbjct: 287 -DLYP--YITKIIPNW 299


>Medtr3g037190.1 | transcription initiation factor IIB | HC |
           chr3:13609403-13610344 | 20130731
          Length = 313

 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 8/196 (4%)

Query: 137 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRT 196
           A+  I  +A  LGL   I D A ++++        R R+ +AL  A L  A R+  +PRT
Sbjct: 108 AFKTIDTMAERLGLVPIIKDRANEIYKRVQDQKSSRGRNQDALLAACLYIACRQEDKPRT 167

Query: 197 LQEI-SIAANVPQKEIGKYIKILGEALQL---SQPINSNSISV--HMPRFCTLLQLNKSA 250
           ++EI S+A    +KEIG+  + + + L L    Q +   +I     M RFC+ L +N  A
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQA 227

Query: 251 QELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 310
            + A     V  ++ F  RR+PI+I+AA IY+  QL D +K   +I   TG+ E T++  
Sbjct: 228 VKAAQE--SVKKSEEFDIRRSPITIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIKNS 285

Query: 311 YKELLENWDDLLPSNY 326
           YK+L  +   ++P+ Y
Sbjct: 286 YKDLYPHVSKIIPTWY 301


>Medtr3g040300.1 | transcription initiation factor IIB | HC |
           chr3:14150000-14150812 | 20130731
          Length = 270

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 8/185 (4%)

Query: 148 LGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEIS-IAANV 206
           LGL   I D A ++++   +    + R+ +AL  A L  A R+  +P T++EIS IA   
Sbjct: 76  LGLVPTIKDRAIEIYKLVANQKYSKARNQDALLAACLYIACRQEDKPHTVKEISSIAIGA 135

Query: 207 PQKEIGKYIKILGEALQL-----SQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVV 261
            +KEIG+  + + + L L     S  + +  I   M RFC+ L +N  A + A     V 
Sbjct: 136 TKKEIGRAKQYIMKQLALENGGQSVEMGTTHIGDFMGRFCSNLGMNHQAVKAANE--SVQ 193

Query: 262 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 321
            ++ F  RR+PISI+A  IY+  QL D +K+  +I   TG+ E T+R  YK+L      +
Sbjct: 194 NSEEFDIRRSPISIAATVIYIITQLSDDKKSLKDISVATGVAEGTIRNSYKDLYPRVSKI 253

Query: 322 LPSNY 326
           +P+ Y
Sbjct: 254 IPTWY 258


>Medtr3g040150.1 | transcription initiation factor IIB | HC |
           chr3:14074475-14075956 | 20130731
          Length = 405

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 139 MQIIDV-ASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTL 197
            Q ID+ A  LGL   I D A ++++        + R+ EAL  A +  A R+  +PRT+
Sbjct: 104 FQTIDIMAEKLGLVPTIKDRANEIYKRVEDQKSSKGRNQEALLAACVYIACRQEDKPRTI 163

Query: 198 QEISIAAN-VPQKEIGKYIKILGEALQL---SQPINSNSISV--HMPRFCTLLQLNKSAQ 251
           +EI + AN   +KEI +  + + + L L    Q I    I +   M RFC+ L +N  A 
Sbjct: 164 KEICLIANGATKKEIVRAKEYIVKQLGLENGGQSIEMGIIHIGDFMGRFCSNLGMNHQAV 223

Query: 252 ELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 311
           + AT    V  ++ F  RR+PISI+A  IY+   L D +K+  +I   TG++E T+R  Y
Sbjct: 224 KAATE--SVQNSEEFDIRRSPISIAATVIYIITHLSDDKKSLRDISVATGVSEGTIRNTY 281

Query: 312 KELLENWDDLLPSNY 326
           K++  +   ++P+ Y
Sbjct: 282 KDIFPHVSKIIPTWY 296