Miyakogusa Predicted Gene

Lj2g3v1758390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1758390.1 tr|A8HSJ0|A8HSJ0_CHLRE DNA-directed RNA
polymerases I/II/III subunit OS=Chlamydomonas reinhardtii
GN,52.7,5e-17,RNA_POL_N_8KD,RNA polymerases, subunit N, zinc binding
site; RNA_pol_N,DNA-directed RNA polymerase, ,CUFF.37806.1
         (99 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g034040.1 | DNA-directed RNA polymerase II 8.2 kDa protein...    91   2e-19
Medtr5g034050.1 | DNA-directed RNA polymerase II 8.2 kDa protein...    86   8e-18
Medtr4g075600.1 | DNA-directed RNA polymerase II 8.2 kDa protein...    84   4e-17

>Medtr5g034040.1 | DNA-directed RNA polymerase II 8.2 kDa protein |
           LC | chr5:14712702-14705432 | 20130731
          Length = 123

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query: 1   MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
           +IPVRCFTCGKVVG+KW+ Y + L++G +  +ALDSLGL R CCR MLMTH++L D  ++
Sbjct: 54  IIPVRCFTCGKVVGDKWDTYLELLQSGYTEGDALDSLGLVRYCCRRMLMTHVELIDKLLN 113

Query: 61  YDPKPKERHN 70
           Y+P  K   N
Sbjct: 114 YNPLEKHGAN 123


>Medtr5g034050.1 | DNA-directed RNA polymerase II 8.2 kDa protein
          | HC | chr5:14717086-14713333 | 20130731
          Length = 71

 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   +  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKERHN 70
          Y+   K   N
Sbjct: 62 YNTMEKHEAN 71


>Medtr4g075600.1 | DNA-directed RNA polymerase II 8.2 kDa protein
          | LC | chr4:28891413-28888810 | 20130731
          Length = 147

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 48/65 (73%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   +  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKP 65
          Y+  P
Sbjct: 62 YNTCP 66