Miyakogusa Predicted Gene

Lj2g3v1757320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1757320.1 Non Characterized Hit- tr|C6TMS6|C6TMS6_SOYBN
Putative uncharacterized protein (Fragment)
OS=Glycine,73.44,2e-19,SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,NULL,CUFF.37803.1
         (70 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g020120.1 | MIP18 family plant protein | HC | chr5:7668876...   134   2e-32
Medtr5g028010.1 | MIP18 family plant protein | HC | chr5:1170748...   108   8e-25

>Medtr5g020120.1 | MIP18 family plant protein | HC |
           chr5:7668876-7665428 | 20130731
          Length = 133

 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/70 (92%), Positives = 66/70 (94%)

Query: 1   MATVIGLCLRVKLKHYFPPHYKVDIKVSPGSHADEESVNKQLNDKERIAAALENPNLRQL 60
           M TVIGLCLRVKLKHYFP HYKVDIKVS GSHA+EESVNKQLNDKERIAAALENPNLRQL
Sbjct: 64  MVTVIGLCLRVKLKHYFPAHYKVDIKVSQGSHANEESVNKQLNDKERIAAALENPNLRQL 123

Query: 61  VDECLSSNEL 70
           VDECL SNEL
Sbjct: 124 VDECLESNEL 133


>Medtr5g028010.1 | MIP18 family plant protein | HC |
           chr5:11707485-11704514 | 20130731
          Length = 168

 Score =  108 bits (271), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 57/66 (86%)

Query: 1   MATVIGLCLRVKLKHYFPPHYKVDIKVSPGSHADEESVNKQLNDKERIAAALENPNLRQL 60
           MAT+IGLCLRVKL    PP YKVDI+V+PGSHA E +VNKQLNDKER+AAALENPNL  +
Sbjct: 99  MATIIGLCLRVKLLRSLPPRYKVDIRVAPGSHATEAAVNKQLNDKERVAAALENPNLVDM 158

Query: 61  VDECLS 66
           VDECL+
Sbjct: 159 VDECLA 164