Miyakogusa Predicted Gene

Lj2g3v1757130.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1757130.2 tr|G7KDL7|G7KDL7_MEDTR DNA-3-methyladenine
glycosylase OS=Medicago truncatula GN=MTR_5g020300 PE=4
S,64.21,0,FAMILY NOT NAMED,NULL; HhH-GPD,HhH-GPD domain; no
description,DNA glycosylase; no description,Helix-,CUFF.37792.2
         (286 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g020300.1 | HhH-GPD base excision DNA repair family protei...   319   2e-87
Medtr3g111890.2 | HhH-GPD base excision DNA repair family protei...   248   6e-66
Medtr3g111890.1 | HhH-GPD base excision DNA repair family protei...   247   7e-66

>Medtr5g020300.1 | HhH-GPD base excision DNA repair family protein |
           HC | chr5:7762506-7763905 | 20130731
          Length = 281

 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/284 (58%), Positives = 194/284 (68%), Gaps = 10/284 (3%)

Query: 1   MKRTRSQTK----PYSNPN---DSLSSSKISFRARKIRRTPLITNKXXXXXXXXXXXXXX 53
           MKRTRSQ K    P +NP     +L SSKI+F A+KI +    T K              
Sbjct: 1   MKRTRSQIKSNPTPITNPQPPIKTLISSKITFPAKKILKP---TIKTKEEVKKPHFPLLT 57

Query: 54  XXXXXXXXATGEIEAALNHLRAADPLLANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQL 113
                   +  EI AALNHLRAADPLL+  I++ PPP FSN   +TPFFSL K++ISQQL
Sbjct: 58  PIIQKPLTSQNEITAALNHLRAADPLLSTIINTFPPPQFSNSNAITPFFSLIKTLISQQL 117

Query: 114 SNKAASAIESRFVSLCGGRXXXXXXXXXXXXXXQLRQVGISGPKATYLHDLATKYIDGIL 173
           S KA+S+IE RF+SL   +               LR VGIS  KATY+HDLATKY DG L
Sbjct: 118 SIKASSSIEQRFISLFTNQCSILPNTVLSVTPDTLRSVGISARKATYIHDLATKYADGFL 177

Query: 174 SDSTILQMDDETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLK 233
           SDS+I++MDDE L+EKL  VKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVE+LYGLK
Sbjct: 178 SDSSIVEMDDEMLYEKLMSVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVEKLYGLK 237

Query: 234 ALPAPSLMERLCQKWKPYSSVASCYMYKFMDAKGVLPLPATTIT 277
            LP+P  ME LC+KWKPY SV S YMY+F++AKGVLP P TT T
Sbjct: 238 VLPSPEKMEGLCEKWKPYRSVGSWYMYRFVEAKGVLPNPTTTTT 281


>Medtr3g111890.2 | HhH-GPD base excision DNA repair family protein |
           HC | chr3:52367273-52369676 | 20130731
          Length = 375

 Score =  248 bits (632), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 117/204 (57%), Positives = 151/204 (74%), Gaps = 2/204 (0%)

Query: 64  GEIEAALNHLRAADPLLANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIES 123
           GE+E A+ +LR+ADPLL+  ID   PP F N    TPF +LT+SI+ QQL+ KA ++I +
Sbjct: 120 GEVEIAIRYLRSADPLLSPLIDIHQPPTFDN--FQTPFLALTRSILYQQLAFKAGTSIYT 177

Query: 124 RFVSLCGGRXXXXXXXXXXXXXXQLRQVGISGPKATYLHDLATKYIDGILSDSTILQMDD 183
           RF++LCGG               QLRQ+G+SG KA+YLHDLA KY +GILSDS I+ MDD
Sbjct: 178 RFIALCGGEAGVVPDNVLALTAQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDD 237

Query: 184 ETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSLMER 243
           ++L   LT+V GIG WSVHMFMIF+LHRPDVLP+ DL VR+GV+ LY L  LP PS M++
Sbjct: 238 KSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMDQ 297

Query: 244 LCQKWKPYSSVASCYMYKFMDAKG 267
           LC+KWKPY SVAS Y+++F++AKG
Sbjct: 298 LCEKWKPYRSVASWYLWRFVEAKG 321


>Medtr3g111890.1 | HhH-GPD base excision DNA repair family protein |
           HC | chr3:52367273-52371800 | 20130731
          Length = 377

 Score =  247 bits (631), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/204 (57%), Positives = 151/204 (74%), Gaps = 2/204 (0%)

Query: 64  GEIEAALNHLRAADPLLANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIES 123
           GE+E A+ +LR+ADPLL+  ID   PP F N    TPF +LT+SI+ QQL+ KA ++I +
Sbjct: 120 GEVEIAIRYLRSADPLLSPLIDIHQPPTFDN--FQTPFLALTRSILYQQLAFKAGTSIYT 177

Query: 124 RFVSLCGGRXXXXXXXXXXXXXXQLRQVGISGPKATYLHDLATKYIDGILSDSTILQMDD 183
           RF++LCGG               QLRQ+G+SG KA+YLHDLA KY +GILSDS I+ MDD
Sbjct: 178 RFIALCGGEAGVVPDNVLALTAQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDD 237

Query: 184 ETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSLMER 243
           ++L   LT+V GIG WSVHMFMIF+LHRPDVLP+ DL VR+GV+ LY L  LP PS M++
Sbjct: 238 KSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMDQ 297

Query: 244 LCQKWKPYSSVASCYMYKFMDAKG 267
           LC+KWKPY SVAS Y+++F++AKG
Sbjct: 298 LCEKWKPYRSVASWYLWRFVEAKG 321