Miyakogusa Predicted Gene
- Lj2g3v1728900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1728900.1 tr|G7KGA2|G7KGA2_MEDTR Short internode related
sequence OS=Medicago truncatula GN=MTR_5g021130 PE=4
,57.64,0,seg,NULL; DUF702,Protein of unknown function DUF702; FAMILY
NOT NAMED,NULL; put_zinc_LRP1: putative ,CUFF.37739.1
(321 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g021130.1 | transcription factor, putative | HC | chr5:810... 290 1e-78
Medtr8g076620.1 | zinc finger, LRP1 type protein | HC | chr8:324... 241 9e-64
Medtr3g112510.1 | transcription factor, putative | LC | chr3:527... 163 2e-40
Medtr5g089750.1 | lateral root primordium (LRP)-like protein | H... 130 2e-30
Medtr4g071110.1 | zinc finger, LRP1 type protein | LC | chr4:267... 124 9e-29
Medtr3g014660.1 | LRP1 carboxy-terminal domain protein | HC | ch... 118 6e-27
Medtr8g039110.1 | LRP1 carboxy-terminal domain protein | HC | ch... 114 1e-25
Medtr1g023230.1 | zinc finger, LRP1 type protein | HC | chr1:741... 97 3e-20
Medtr0363s0040.1 | zinc finger, LRP1 type protein, putative | HC... 82 5e-16
Medtr0105s0070.1 | zinc finger, LRP1 type protein, putative | HC... 57 2e-08
>Medtr5g021130.1 | transcription factor, putative | HC |
chr5:8100971-8103215 | 20130731
Length = 323
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 174/342 (50%), Positives = 199/342 (58%), Gaps = 42/342 (12%)
Query: 1 MAGLFSLXXXXXXXNDAEDQQHHHQQNEIPPPPDSSLFWYSNKNHDDVVSS-SYRGFEIW 59
MAGLFSL + E+QQ+++ E FWY NKN D VVS+ SYRGFEIW
Sbjct: 1 MAGLFSLGRT-----EEENQQNNNPTTE---------FWY-NKNDDSVVSNNSYRGFEIW 45
Query: 60 NXXXXXXXXXXXXXXXXXXXXDLYTSAAALGVGPSE----AXXXXXXXXXXXXXXXXXCQ 115
N DLY+S LGVGP+ + CQ
Sbjct: 46 NQHQQQQLFSLQQPQQQ----DLYSSGVVLGVGPTNRVCSSDENRSTVFIGSGSGSISCQ 101
Query: 116 DCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKXXXXXXXXXXXXXXX-XXXXD 174
DCGNQAKKDCPH+RCRTCCKSRGFDCQTH+KSTWVPA++
Sbjct: 102 DCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQQLSAPKSFQQ 161
Query: 175 HG-------HNVHNPTSSSLACTLLPPNPS----HSGGLEEVNFPAVVSTPAEFKCVRVS 223
HG H N +SSLACT LP N S +G L+E+NFPAVV++PAEF+CVRVS
Sbjct: 162 HGDIVPQNRHRDLNNNNSSLACTRLPTNRSLTLPSAGLLDEMNFPAVVNSPAEFRCVRVS 221
Query: 224 SVDEADEEYAYSTAVNIGGHVFRGILYDHGPDG-----NXXXXXXXXXXXXXXXXVVQPL 278
SVDE +EEYAYSTAVNIGGHVFRGILYD+GPD N VV+PL
Sbjct: 222 SVDENEEEYAYSTAVNIGGHVFRGILYDYGPDHGSNSYNMAAGNASNSSGTALEGVVEPL 281
Query: 279 NLISAAGNTTAVGAIVDPSSLYPAPLNAFMPASGTQFFPHPR 320
NLIS + VG IVDPSSLYPAPLN FMP+SGTQFFPHPR
Sbjct: 282 NLISGVP-ASGVGEIVDPSSLYPAPLNTFMPSSGTQFFPHPR 322
>Medtr8g076620.1 | zinc finger, LRP1 type protein | HC |
chr8:32482156-32484876 | 20130731
Length = 331
Score = 241 bits (614), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 179/351 (50%), Gaps = 52/351 (14%)
Query: 1 MAGLFSLXXXXXXXNDAEDQQHHHQQNEIPPPPDSSLFWYSNKNHDDVVSSSYRG-FEIW 59
MAGLFSL E QQ H PP +LFWY NKN DDV SSYRG E+W
Sbjct: 1 MAGLFSLGGGGRGNQGEESQQQGH------IPPQETLFWY-NKN-DDV--SSYRGNLELW 50
Query: 60 NXXXXXXXXXXXXXXXXXXX---XDLYTSAAALGV-------------GPSEAXXXXXXX 103
N DLY LGV S +
Sbjct: 51 NQHQQHQQHQQQDDMHAARPFFPRDLYGPGVGLGVGPSRVSSDDHEHQSSSRSAAFTMAM 110
Query: 104 XXXXXXXXXXCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKXXXXXXXXX 163
CQDCGNQAKKDCPH+RCRTCCKSRGF CQTH+KSTWVPAS+
Sbjct: 111 RSSSSAEGISCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPASRRRERQQQLS 170
Query: 164 XXXXXXXXXXDHGHNVHNPTSSSLACTLLPPNPSHSGGLEEVNFPAVVSTPAEFKCVRVS 223
P S A L+ H+G LEE NFPAVVS+PAEF+CVRVS
Sbjct: 171 SSPLQRDIS-------KRPRDGSNA--LVSTRNFHTG-LEEANFPAVVSSPAEFRCVRVS 220
Query: 224 SVDEADEEYAYSTAVNIGGHVFRGILYDHGPDGNXXXXXXXXXXXXXXXXV--------- 274
S+D+AD+ YAY TAVNIGGH+F+GILYD GP+ + +
Sbjct: 221 SIDDADDRYAYQTAVNIGGHLFKGILYDFGPESSTNNSNNNSNYNNSNYMIGETSGGGGV 280
Query: 275 --VQPLNLISAAGNTTAV---GAIVDPSSLYPAPLNAFMPASGTQFFPHPR 320
QPLNLI A +TT V GA+VDPSSLY AP+NAFM ASGTQFFP PR
Sbjct: 281 GVAQPLNLI-ADSDTTVVASSGALVDPSSLYSAPINAFMTASGTQFFPRPR 330
>Medtr3g112510.1 | transcription factor, putative | LC |
chr3:52767953-52766535 | 20130731
Length = 294
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 117/207 (56%), Gaps = 8/207 (3%)
Query: 114 CQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKXXXXXXXXXXXXXXXXXXX 173
CQDCGNQAKKDC H+RCRTCCKSRGF CQTH+KSTWVPA+K
Sbjct: 86 CQDCGNQAKKDCIHLRCRTCCKSRGFQCQTHVKSTWVPAAK---RRERQQHLSALPFRRR 142
Query: 174 DHGHNVHNPTSSSLACTLLP-PNPSH-SGGLEEVNFPAVVSTPA-EFKCVRVSSVDEAD- 229
DH N T + T LP P P + GLE FP VS+P F+CVRVSS+D D
Sbjct: 143 DHVDNYKRHTEINQGATSLPFPQPPIPTTGLELGQFPPEVSSPGVTFRCVRVSSLDGPDH 202
Query: 230 EEYAYSTAVNIGGHVFRGILYDHGPDGNXXXXXXXXXXXXXXXXVVQPLNLISAAGNTTA 289
E+ AY TAVNIGGHVF+GILYD GP Q L+ ++A T
Sbjct: 203 EQCAYQTAVNIGGHVFKGILYDQGPPNLYTSIAPIEGSSGGGHHQPQQLDFMAATATTAT 262
Query: 290 VGAIVDPSSLYPAPLNAFMPASGTQFF 316
I SLY APLNAFM A+GTQFF
Sbjct: 263 TSGIHFDPSLYSAPLNAFM-AAGTQFF 288
>Medtr5g089750.1 | lateral root primordium (LRP)-like protein | HC |
chr5:39020566-39017917 | 20130731
Length = 467
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 114 CQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKXXXXXXXXXXXXXXXXXXX 173
CQDCGNQAKKDC + RCRTCCKSRGFDC TH+KSTWVPA++
Sbjct: 249 CQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLSSTATTTVVAGGGS 308
Query: 174 DHGHNVHNP--------TSSSLACTLLPPN-----PSHSGGLEEVNFPAVVSTPAEFKCV 220
+ TS + PP SH + + P V PA FKCV
Sbjct: 309 SGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQDAGFKDSMPGQVRAPAVFKCV 368
Query: 221 RVSSVDEADEEYAYSTAVNIGGHVFRGILYDHG 253
RV+SVD+ +EYAY V IGGHVF+G LYDHG
Sbjct: 369 RVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHG 401
>Medtr4g071110.1 | zinc finger, LRP1 type protein | LC |
chr4:26795870-26794245 | 20130731
Length = 264
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 25/145 (17%)
Query: 114 CQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKXXXXXXXXXXXXXXXXXXX 173
CQDCGNQAKKDC + RCR+CCK++GF+C TH++STW+PA +
Sbjct: 17 CQDCGNQAKKDCAYSRCRSCCKNKGFNCHTHIRSTWIPADR--------------RRHRM 62
Query: 174 DH---GHNVHNPTSSSLACTLLPPNPSHSGGLEEVNFPAVVSTPAEFKCVRVSSVDEADE 230
DH H++H T+ +E FPAV S+ CV+V S+DE
Sbjct: 63 DHPSDQHHLHEHKRHKQINTI--------SSSDEFKFPAVTSSMTTLTCVQVRSMDETVN 114
Query: 231 EYAYSTAVNIGGHVFRGILYDHGPD 255
E AY T+V IGGHVF GILYD GPD
Sbjct: 115 ETAYQTSVEIGGHVFSGILYDQGPD 139
>Medtr3g014660.1 | LRP1 carboxy-terminal domain protein | HC |
chr3:4203654-4198130 | 20130731
Length = 329
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 23/161 (14%)
Query: 114 CQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKXXX---------------- 157
CQDCGN+AKKDC RCRTCCK RG+DC THLKSTW+P+++
Sbjct: 134 CQDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRREREVEMFAGGGDGEGCS 193
Query: 158 --XXXXXXXXXXXXXXXXDHGHNVHNPTSSSLACTLLPPNPSHSGGLEEVNFPAVVSTPA 215
H N + T S A + + GL P V+ PA
Sbjct: 194 GVKRQKGLLGSSQNAAATSHSSNSNGTTPKSFATSSCHQDAGFKEGL-----PGHVNAPA 248
Query: 216 EFKCVRVSSVDEADEEYAYSTAVNIGGHVFRGILYDHGPDG 256
F+C RV+++ ++E+AY V+I GHVF+G LYDHG DG
Sbjct: 249 VFRCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDG 289
>Medtr8g039110.1 | LRP1 carboxy-terminal domain protein | HC |
chr8:14512197-14513962 | 20130731
Length = 327
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 79/161 (49%), Gaps = 19/161 (11%)
Query: 114 CQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKXXXXXX-----------XX 162
CQDCGN+AKKDC + RCRTCCK RGFDC TH+KSTW+PAS
Sbjct: 124 CQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPASMRRDRSMVVAEGGDSDGGAS 183
Query: 163 XXXXXXXXXXXDHGHNV--------HNPTSSSLACTLLPPNPSHSGGLEEVNFPAVVSTP 214
+NV N + + + +L + H + P V P
Sbjct: 184 SGTKRQKILMTSSQNNVAANSHSSSSNAATRTRSLSLDITSSCHQDPGFKQTLPRYVRAP 243
Query: 215 AEFKCVRVSSVDEADEEYAYSTAVNIGGHVFRGILYDHGPD 255
A FKC RVS++ ++E AY VNI GHVF+G LYD G D
Sbjct: 244 AVFKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGVD 284
>Medtr1g023230.1 | zinc finger, LRP1 type protein | HC |
chr1:7419015-7417436 | 20130731
Length = 252
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 64/111 (57%), Gaps = 12/111 (10%)
Query: 114 CQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKXXXXXXXXXXXXXXXX--- 170
CQDCGNQAKKDCPH+RCRTCCKSRGF CQTH+KSTWVPA+K
Sbjct: 122 CQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQQQ 181
Query: 171 ----XXXDHGHNVHNPT--SSSLACTLLPPNPSHSGGLEEVNFPAVVSTPA 215
H N ++P+ S SL CT P P + GLE NFP +++P
Sbjct: 182 QQFHSSRRHRENQNDPSGASGSLTCT---PVPITTTGLELGNFPPELNSPG 229
>Medtr0363s0040.1 | zinc finger, LRP1 type protein, putative | HC |
scaffold0363:17438-16319 | 20130731
Length = 245
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 114 CQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPAS 153
CQDCGN+AKKDC + RCRTCCK RGFDC TH+KSTW+PAS
Sbjct: 124 CQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPAS 163
>Medtr0105s0070.1 | zinc finger, LRP1 type protein, putative | HC |
scaffold0105:24983-22116 | 20130731
Length = 86
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 29/33 (87%)
Query: 116 DCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKST 148
DCGNQAKKDC + RCR+CCK++ F+C TH+K++
Sbjct: 44 DCGNQAKKDCAYSRCRSCCKNKDFNCHTHIKTS 76