Miyakogusa Predicted Gene
- Lj2g3v1705490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1705490.1 Non Characterized Hit- tr|I1JG14|I1JG14_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5264
PE=,78.67,0,RRM_1,RNA recognition motif domain; coiled-coil,NULL;
seg,NULL; RNA-binding domain, RBD,NULL; RRM,RN,CUFF.37730.1
(210 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g108290.1 | MKI67 interacting nucleolar phosphoprotein | H... 297 4e-81
Medtr4g127330.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 264 4e-71
Medtr4g127330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 264 4e-71
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 3e-07
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 51 6e-07
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 3e-06
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 3e-06
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 48 6e-06
>Medtr1g108290.1 | MKI67 interacting nucleolar phosphoprotein | HC |
chr1:48970128-48966656 | 20130731
Length = 213
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/198 (77%), Positives = 171/198 (86%), Gaps = 3/198 (1%)
Query: 16 RVTAA--KPSD-GPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPHGFYEKEIEGYFGQ 72
RV A KPS+ DFLPLEGGP RKLP LEN VLY+GRIPHGFYEKE+E YFGQ
Sbjct: 16 RVNAINNKPSEHAADFLPLEGGPGRKLPELKQLENSSPVLYIGRIPHGFYEKEMEAYFGQ 75
Query: 73 FGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVADTMHNYLLFAHLLQVHVMPPEQVH 132
FGTIKRLRI+RNKKTGKSRHFGFIEFES EVAKIVADTMHNYLLF HLLQV V+P E VH
Sbjct: 76 FGTIKRLRISRNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPSEHVH 135
Query: 133 PNLWRGFNYRSKPLDSVEIQREQHDKERTLEEHRKLVEKIVSRDKKRRKKIEEAGIDYEC 192
P LW+GFNYR KPLD+++I+RE HDKERTLEEH+KLV++++ RDKKRRKKIE AGIDYEC
Sbjct: 136 PRLWKGFNYRYKPLDTLQIERELHDKERTLEEHKKLVDRVMKRDKKRRKKIEAAGIDYEC 195
Query: 193 PEIVGNIQPAPKKLKFED 210
PEIVGN+Q APKK+KFED
Sbjct: 196 PEIVGNLQSAPKKIKFED 213
>Medtr4g127330.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:52834251-52836957 | 20130731
Length = 182
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/171 (75%), Positives = 144/171 (84%), Gaps = 4/171 (2%)
Query: 11 QKSLKRVTAAKPSD---GPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPHGFYEKEIE 67
KSLKR+ A KPS DFLPL+ GP RKLP PLEN VLY+GRIPHGFYE E+E
Sbjct: 10 HKSLKRINA-KPSHSQPAADFLPLDCGPGRKLPELKPLENTSPVLYIGRIPHGFYETEME 68
Query: 68 GYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVADTMHNYLLFAHLLQVHVMP 127
YFGQFGT+KRLRIARNKKTGKSRHFGFIEFES EVAKIVADTMHNYLLF HLLQV V+
Sbjct: 69 AYFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVA 128
Query: 128 PEQVHPNLWRGFNYRSKPLDSVEIQREQHDKERTLEEHRKLVEKIVSRDKK 178
E VHPNLWRGFNYR KPLDS++I+RE+HDKERTLEEH+KLV++++ RDKK
Sbjct: 129 SEDVHPNLWRGFNYRCKPLDSLQIERERHDKERTLEEHKKLVDRVMKRDKK 179
>Medtr4g127330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:52834251-52836886 | 20130731
Length = 182
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/171 (75%), Positives = 144/171 (84%), Gaps = 4/171 (2%)
Query: 11 QKSLKRVTAAKPSD---GPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPHGFYEKEIE 67
KSLKR+ A KPS DFLPL+ GP RKLP PLEN VLY+GRIPHGFYE E+E
Sbjct: 10 HKSLKRINA-KPSHSQPAADFLPLDCGPGRKLPELKPLENTSPVLYIGRIPHGFYETEME 68
Query: 68 GYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVADTMHNYLLFAHLLQVHVMP 127
YFGQFGT+KRLRIARNKKTGKSRHFGFIEFES EVAKIVADTMHNYLLF HLLQV V+
Sbjct: 69 AYFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVA 128
Query: 128 PEQVHPNLWRGFNYRSKPLDSVEIQREQHDKERTLEEHRKLVEKIVSRDKK 178
E VHPNLWRGFNYR KPLDS++I+RE+HDKERTLEEH+KLV++++ RDKK
Sbjct: 129 SEDVHPNLWRGFNYRCKPLDSLQIERERHDKERTLEEHKKLVDRVMKRDKK 179
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVADTM 111
L+V +P+ E+E+E +F QFG++ + + +K T +S+ +I F + E A +
Sbjct: 331 LFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEES 390
Query: 112 HNYLLFAHLLQVHVMPPEQVHPNLWRGFNYRSKPL 146
N + LL HVMP H N N SK L
Sbjct: 391 DNSIFQGRLL--HVMPAIPRHSNNEENKNQGSKTL 423
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVADTM 111
++VG IP F E ++ F Q+G + + + R+K TGKS+ F FI +E + D +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 112 HNYLLFAHLLQV-HV 125
+ + +++V HV
Sbjct: 98 NGAQVSGRIIRVDHV 112
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 20 AKPSDGPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPHGFYEKEIEGYFGQFGTIKRL 79
A P D + + P TP+ K ++VG + E + + YF QFGTI +
Sbjct: 78 AVPRDDQNVFTRSNSSSHGSPAPTPIRTK--KIFVGGLASTVTESDFKNYFDQFGTITDV 135
Query: 80 RIARNKKTGKSRHFGFIEFESAE-VAKIVADTMHNYLLFAHLLQVHVMPPEQVHPNLWRG 138
+ + T + R FGFI ++S E V K++ T H L +++V P+ + P+ RG
Sbjct: 136 VVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHE--LNGKMVEVKRAVPKDLSPSPSRG 193
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 20 AKPSDGPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPHGFYEKEIEGYFGQFGTIKRL 79
A P D + + P TP+ K ++VG + E + + YF QFGTI +
Sbjct: 78 AVPRDDQNVFTRSNSSSHGSPAPTPIRTK--KIFVGGLASTVTESDFKNYFDQFGTITDV 135
Query: 80 RIARNKKTGKSRHFGFIEFESAE-VAKIVADTMHNYLLFAHLLQVHVMPPEQVHPNLWRG 138
+ + T + R FGFI ++S E V K++ T H L +++V P+ + P+ RG
Sbjct: 136 VVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHE--LNGKMVEVKRAVPKDLSPSPSRG 193
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 20 AKPSDGPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPHGFYEKEIEGYFGQFGTIKRL 79
A P D + + P TP+ K ++VG + E + + YF QFGTI +
Sbjct: 78 AVPRDDQNVFTRSNSSSHGSPAPTPIRTK--KIFVGGLASTVTESDFKNYFDQFGTITDV 135
Query: 80 RIARNKKTGKSRHFGFIEFESAE-VAKIVADTMHNYLLFAHLLQVHVMPPEQVHPNLWRG 138
+ + T + R FGFI ++S E V K++ T H L +++V P+ + P+ RG
Sbjct: 136 VVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHE--LNGKMVEVKRAVPKDLSPSPSRG 193
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 20 AKPSDGPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPHGFYEKEIEGYFGQFGTIKRL 79
A P D + + P TP+ K ++VG + E + + YF QFGTI +
Sbjct: 8 AVPRDDQNVFTRSNSSSHGSPAPTPIRTK--KIFVGGLASTVTESDFKNYFDQFGTITDV 65
Query: 80 RIARNKKTGKSRHFGFIEFESAE-VAKIVADTMHNYLLFAHLLQVHVMPPEQVHPNLWRG 138
+ + T + R FGFI ++S E V K++ T H L +++V P+ + P+ RG
Sbjct: 66 VVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHE--LNGKMVEVKRAVPKDLSPSPSRG 123
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVADTM 111
L+VG + EK ++ F FG + +RI +K +G++R FGF+ F + + AK D M
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 112 HNYLLFAHLLQVH 124
L L+++
Sbjct: 98 DGKALLGRPLRIN 110
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVADTM 111
L+V +P+ E+E+E +F QFG++ ++ + +K T +S+ FI F E A +
Sbjct: 901 LFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEES 960
Query: 112 HNYLLFAHLLQVHVMPPEQVHPNLWRGFNYRSKPL 146
N + LL HV+ +H N N SK L
Sbjct: 961 DNSIFQGRLL--HVIAAIPIHSNNEENKNQGSKTL 993