Miyakogusa Predicted Gene

Lj2g3v1705470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1705470.1 tr|Q9M4U6|Q9M4U6_SOLCI Histone H1 variant
OS=Solanum chilense PE=3 SV=1,53.57,9e-19,H15,Histone H1/H5;
Linker_histone,Histone H1/H5; no description,Winged helix-turn-helix
transcriptio,CUFF.37695.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g021730.1 | linker histone H1 and h5 family protein | HC |...    80   8e-16
Medtr7g096280.1 | linker histone H1 and h5 family protein | HC |...    64   6e-11
Medtr1g070390.1 | linker histone H1 and h5 family protein | HC |...    50   6e-07
Medtr1g070435.1 | linker histone H1 and h5 family protein | HC |...    50   7e-07
Medtr1g080700.1 | linker histone H1 and h5 family protein | HC |...    50   9e-07
Medtr1g070440.1 | linker histone H1 and h5 family protein | HC |...    49   2e-06

>Medtr5g021730.1 | linker histone H1 and h5 family protein | HC |
           chr5:8467951-8467384 | 20130731
          Length = 164

 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 41/47 (87%)

Query: 5   YAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLSG 51
           YAIAKYM+EK K VLPANFKKIL LQLKNQ  +GKLVKIKASYKLS 
Sbjct: 58  YAIAKYMDEKFKPVLPANFKKILSLQLKNQTKRGKLVKIKASYKLSD 104


>Medtr7g096280.1 | linker histone H1 and h5 family protein | HC |
           chr7:38619056-38620408 | 20130731
          Length = 306

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)

Query: 4   EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKL 49
           +YA+AK++EEKHK+ LPANFKKIL +Q+K   A GKLVK+K SYKL
Sbjct: 84  QYALAKFIEEKHKN-LPANFKKILLVQIKKLVASGKLVKVKGSYKL 128


>Medtr1g070390.1 | linker histone H1 and h5 family protein | HC |
           chr1:31172959-31174011 | 20130731
          Length = 248

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 37/47 (78%), Gaps = 1/47 (2%)

Query: 4   EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLS 50
           +YAIAK++EEKHK  LP+NFKK+L   LK   A GKLVK+K S+KLS
Sbjct: 85  QYAIAKFIEEKHKQ-LPSNFKKLLLQNLKKNVASGKLVKVKGSFKLS 130


>Medtr1g070435.1 | linker histone H1 and h5 family protein | HC |
           chr1:31227498-31226382 | 20130731
          Length = 254

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 37/47 (78%), Gaps = 1/47 (2%)

Query: 4   EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLS 50
           +YAIAK++EEKHK  LP+NFKK+L   LK   A GKLVK+K S+KLS
Sbjct: 85  QYAIAKFIEEKHKQ-LPSNFKKLLLQNLKKNVASGKLVKVKGSFKLS 130


>Medtr1g080700.1 | linker histone H1 and h5 family protein | HC |
          chr1:35890649-35889690 | 20130731
          Length = 184

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 4  EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLS 50
          ++AI K++EEKHK + P  F+K++ L LK   A GKLVK+K S+K++
Sbjct: 45 QHAITKFIEEKHKDLSP-TFRKLILLHLKKSVASGKLVKVKNSFKIA 90


>Medtr1g070440.1 | linker histone H1 and h5 family protein | HC |
          chr1:31232639-31231541 | 20130731
          Length = 224

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%), Gaps = 1/47 (2%)

Query: 4  EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLS 50
          ++AIAK++EEKHK  LP+NFKK+L   LK   A GKL+K+K S+KLS
Sbjct: 32 QFAIAKFIEEKHKQ-LPSNFKKLLLHNLKKNVASGKLIKVKGSFKLS 77