Miyakogusa Predicted Gene

Lj2g3v1695250.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1695250.2 tr|B9IB18|B9IB18_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_247318
PE=4,49.54,4e-19,FAR1,FAR1 DNA binding domain,CUFF.37673.2
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g098920.1 | FAR-RED impaired response-like protein | HC | ...   205   9e-54
Medtr4g067290.4 | FAR-RED impaired response-like protein | HC | ...   194   1e-50
Medtr4g067290.5 | FAR-RED impaired response-like protein | HC | ...   194   1e-50
Medtr4g067290.2 | FAR-RED impaired response-like protein | HC | ...   194   1e-50
Medtr4g067290.6 | FAR-RED impaired response-like protein | HC | ...   194   2e-50
Medtr4g067290.8 | FAR-RED impaired response-like protein | HC | ...   194   2e-50
Medtr4g067290.3 | FAR-RED impaired response-like protein | HC | ...   189   4e-49
Medtr4g067290.7 | FAR-RED impaired response-like protein | HC | ...   189   4e-49
Medtr4g067290.1 | FAR-RED impaired response-like protein | HC | ...   189   5e-49
Medtr3g006370.1 | FAR-RED impaired response-like protein | HC | ...    90   4e-19
Medtr3g006370.2 | FAR-RED impaired response-like protein | HC | ...    90   4e-19
Medtr2g098880.5 | FAR-RED impaired response-like protein | HC | ...    74   3e-14
Medtr2g098880.1 | FAR-RED impaired response-like protein | HC | ...    74   3e-14
Medtr2g098880.4 | FAR-RED impaired response-like protein | HC | ...    74   3e-14
Medtr2g098880.3 | FAR-RED impaired response-like protein | HC | ...    74   3e-14
Medtr2g098880.2 | FAR-RED impaired response-like protein | HC | ...    74   3e-14

>Medtr2g098920.1 | FAR-RED impaired response-like protein | HC |
           chr2:42362122-42359522 | 20130731
          Length = 264

 Score =  205 bits (521), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 115/124 (92%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI+VRK++SG W +TKFVKEHTHPL+PG+GRRD VYEQY
Sbjct: 135 MPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQY 194

Query: 61  PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
           P+ HD++REL+QQLAIEKKR+ TYKR+L+L+++ I+EHNE++SKKIQHIV+ VK+ME KE
Sbjct: 195 PSGHDRVRELTQQLAIEKKRAETYKRNLDLLYECIEEHNEAVSKKIQHIVESVKEMEAKE 254

Query: 121 EQSH 124
           ++S 
Sbjct: 255 QESQ 258


>Medtr4g067290.4 | FAR-RED impaired response-like protein | HC |
           chr4:25400175-25395606 | 20130731
          Length = 253

 Score =  194 bits (494), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI++RK++SGKWV+TKFVKEHTHPL+PG  RRD ++E Y
Sbjct: 129 MPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRRD-MFEIY 187

Query: 61  PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCV 113
           PNEHDKIRELSQQLAIEKKRS TYKR LE+IFDYI+EHN  LS+K+Q IVD V
Sbjct: 188 PNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSV 240


>Medtr4g067290.5 | FAR-RED impaired response-like protein | HC |
           chr4:25397585-25395606 | 20130731
          Length = 255

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI++RK++SGKWV+TKFVKEHTHPL+PG  RRD ++E Y
Sbjct: 131 MPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRRD-MFEIY 189

Query: 61  PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCV 113
           PNEHDKIRELSQQLAIEKKRS TYKR LE+IFDYI+EHN  LS+K+Q IVD V
Sbjct: 190 PNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSV 242


>Medtr4g067290.2 | FAR-RED impaired response-like protein | HC |
           chr4:25397585-25395606 | 20130731
          Length = 255

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI++RK++SGKWV+TKFVKEHTHPL+PG  RRD ++E Y
Sbjct: 131 MPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRRD-MFEIY 189

Query: 61  PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCV 113
           PNEHDKIRELSQQLAIEKKRS TYKR LE+IFDYI+EHN  LS+K+Q IVD V
Sbjct: 190 PNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSV 242


>Medtr4g067290.6 | FAR-RED impaired response-like protein | HC |
           chr4:25396942-25395606 | 20130731
          Length = 235

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI++RK++SGKWV+TKFVKEHTHPL+PG  RRD ++E Y
Sbjct: 111 MPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRRD-MFEIY 169

Query: 61  PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCV 113
           PNEHDKIRELSQQLAIEKKRS TYKR LE+IFDYI+EHN  LS+K+Q IVD V
Sbjct: 170 PNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSV 222


>Medtr4g067290.8 | FAR-RED impaired response-like protein | HC |
           chr4:25396942-25395606 | 20130731
          Length = 235

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI++RK++SGKWV+TKFVKEHTHPL+PG  RRD ++E Y
Sbjct: 111 MPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRRD-MFEIY 169

Query: 61  PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCV 113
           PNEHDKIRELSQQLAIEKKRS TYKR LE+IFDYI+EHN  LS+K+Q IVD V
Sbjct: 170 PNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSV 222


>Medtr4g067290.3 | FAR-RED impaired response-like protein | HC |
           chr4:25397585-25395606 | 20130731
          Length = 257

 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 103/115 (89%), Gaps = 3/115 (2%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI++RK++SGKWV+TKFVKEHTHPL+PG  RRD ++E Y
Sbjct: 131 MPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRRD-MFEIY 189

Query: 61  P--NEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCV 113
           P  NEHDKIRELSQQLAIEKKRS TYKR LE+IFDYI+EHN  LS+K+Q IVD V
Sbjct: 190 PSQNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSV 244


>Medtr4g067290.7 | FAR-RED impaired response-like protein | HC |
           chr4:25396942-25395606 | 20130731
          Length = 237

 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 103/115 (89%), Gaps = 3/115 (2%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI++RK++SGKWV+TKFVKEHTHPL+PG  RRD ++E Y
Sbjct: 111 MPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRRD-MFEIY 169

Query: 61  P--NEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCV 113
           P  NEHDKIRELSQQLAIEKKRS TYKR LE+IFDYI+EHN  LS+K+Q IVD V
Sbjct: 170 PSQNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSV 224


>Medtr4g067290.1 | FAR-RED impaired response-like protein | HC |
           chr4:25397694-25395606 | 20130731
          Length = 297

 Score =  189 bits (480), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 103/115 (89%), Gaps = 3/115 (2%)

Query: 1   MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
           MPDKREKIVRQRAETRVGCRAMI++RK++SGKWV+TKFVKEHTHPL+PG  RRD ++E Y
Sbjct: 171 MPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRRD-MFEIY 229

Query: 61  P--NEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCV 113
           P  NEHDKIRELSQQLAIEKKRS TYKR LE+IFDYI+EHN  LS+K+Q IVD V
Sbjct: 230 PSQNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSV 284


>Medtr3g006370.1 | FAR-RED impaired response-like protein | HC |
           chr3:658963-663894 | 20130731
          Length = 229

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 76/116 (65%), Gaps = 9/116 (7%)

Query: 12  RAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL--SPGKGRRDCVYEQYPNEHD-KIR 68
           RA TR GC+AMI ++   SGKW++TKFVK+H HPL  SP + R      Q  +E D KI+
Sbjct: 118 RASTREGCKAMIHIKYDQSGKWMITKFVKDHNHPLVVSPREAR------QTMDEKDKKIQ 171

Query: 69  ELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKEEQSH 124
           EL+ +L I+K+   TY+  L+   + ++EH++ LS +I HI+D +K+ E+ EE  H
Sbjct: 172 ELTVELRIKKRLCVTYQEQLKCYMNIVEEHSDKLSARIHHILDNLKEYESIEELLH 227


>Medtr3g006370.2 | FAR-RED impaired response-like protein | HC |
           chr3:658978-663894 | 20130731
          Length = 229

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 76/116 (65%), Gaps = 9/116 (7%)

Query: 12  RAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL--SPGKGRRDCVYEQYPNEHD-KIR 68
           RA TR GC+AMI ++   SGKW++TKFVK+H HPL  SP + R      Q  +E D KI+
Sbjct: 118 RASTREGCKAMIHIKYDQSGKWMITKFVKDHNHPLVVSPREAR------QTMDEKDKKIQ 171

Query: 69  ELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKEEQSH 124
           EL+ +L I+K+   TY+  L+   + ++EH++ LS +I HI+D +K+ E+ EE  H
Sbjct: 172 ELTVELRIKKRLCVTYQEQLKCYMNIVEEHSDKLSARIHHILDNLKEYESIEELLH 227


>Medtr2g098880.5 | FAR-RED impaired response-like protein | HC |
           chr2:42336027-42338328 | 20130731
          Length = 252

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 8/128 (6%)

Query: 4   KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL-SPGK--GRRDCVYEQY 60
           ++++++     TR GC+AMI +     GKWVVTKFVKEHTH L SPG+   R    +   
Sbjct: 122 RKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPGEVPWRGSGKHLVS 181

Query: 61  PNEHD-KIRELSQQLAIE----KKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKD 115
            +E D +IRELS +L  E    K+R A Y+  L  I + +++H E +SKK+  +V  +++
Sbjct: 182 EDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVQNIRE 241

Query: 116 METKEEQS 123
           +E ++  S
Sbjct: 242 IEEEKSDS 249


>Medtr2g098880.1 | FAR-RED impaired response-like protein | HC |
           chr2:42334049-42338328 | 20130731
          Length = 252

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 8/128 (6%)

Query: 4   KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL-SPGK--GRRDCVYEQY 60
           ++++++     TR GC+AMI +     GKWVVTKFVKEHTH L SPG+   R    +   
Sbjct: 122 RKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPGEVPWRGSGKHLVS 181

Query: 61  PNEHD-KIRELSQQLAIE----KKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKD 115
            +E D +IRELS +L  E    K+R A Y+  L  I + +++H E +SKK+  +V  +++
Sbjct: 182 EDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVQNIRE 241

Query: 116 METKEEQS 123
           +E ++  S
Sbjct: 242 IEEEKSDS 249


>Medtr2g098880.4 | FAR-RED impaired response-like protein | HC |
           chr2:42334048-42338328 | 20130731
          Length = 252

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 8/128 (6%)

Query: 4   KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL-SPGK--GRRDCVYEQY 60
           ++++++     TR GC+AMI +     GKWVVTKFVKEHTH L SPG+   R    +   
Sbjct: 122 RKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPGEVPWRGSGKHLVS 181

Query: 61  PNEHD-KIRELSQQLAIE----KKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKD 115
            +E D +IRELS +L  E    K+R A Y+  L  I + +++H E +SKK+  +V  +++
Sbjct: 182 EDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVQNIRE 241

Query: 116 METKEEQS 123
           +E ++  S
Sbjct: 242 IEEEKSDS 249


>Medtr2g098880.3 | FAR-RED impaired response-like protein | HC |
           chr2:42336094-42338380 | 20130731
          Length = 252

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 8/128 (6%)

Query: 4   KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL-SPGK--GRRDCVYEQY 60
           ++++++     TR GC+AMI +     GKWVVTKFVKEHTH L SPG+   R    +   
Sbjct: 122 RKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPGEVPWRGSGKHLVS 181

Query: 61  PNEHD-KIRELSQQLAIE----KKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKD 115
            +E D +IRELS +L  E    K+R A Y+  L  I + +++H E +SKK+  +V  +++
Sbjct: 182 EDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVQNIRE 241

Query: 116 METKEEQS 123
           +E ++  S
Sbjct: 242 IEEEKSDS 249


>Medtr2g098880.2 | FAR-RED impaired response-like protein | HC |
           chr2:42334809-42338380 | 20130731
          Length = 264

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 8/128 (6%)

Query: 4   KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL-SPGK--GRRDCVYEQY 60
           ++++++     TR GC+AMI +     GKWVVTKFVKEHTH L SPG+   R    +   
Sbjct: 134 RKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPGEVPWRGSGKHLVS 193

Query: 61  PNEHD-KIRELSQQLAIE----KKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKD 115
            +E D +IRELS +L  E    K+R A Y+  L  I + +++H E +SKK+  +V  +++
Sbjct: 194 EDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVQNIRE 253

Query: 116 METKEEQS 123
           +E ++  S
Sbjct: 254 IEEEKSDS 261