Miyakogusa Predicted Gene
- Lj2g3v1670850.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1670850.1 Non Characterized Hit- tr|F6HMU4|F6HMU4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,42.68,2e-18,Domain in the RNA-binding Lupus La
protein;,RNA-binding protein Lupus La; seg,NULL; no
description,W,CUFF.37639.1
(498 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g022790.1 | ATP synthase, A subunit | HC | chr5:9032818-90... 489 e-138
Medtr5g022790.3 | ATP synthase, A subunit | HC | chr5:9031583-90... 441 e-124
Medtr5g022790.2 | ATP synthase, A subunit | HC | chr5:9031583-90... 431 e-121
Medtr8g075120.1 | LA-related protein 6 LA RNA-binding domain pro... 253 2e-67
Medtr1g025920.1 | LA-related protein 6 LA RNA-binding domain pro... 163 3e-40
Medtr1g025920.2 | LA-related protein 6 LA RNA-binding domain pro... 146 4e-35
Medtr3g114450.1 | LA-related protein 6 LA RNA-binding domain pro... 146 5e-35
Medtr3g114340.1 | LA-related protein 6 LA RNA-binding domain pro... 137 3e-32
Medtr5g088200.1 | LA-related protein 2 LA RNA-binding domain pro... 100 5e-21
Medtr3g114450.3 | LA-related protein 6 LA RNA-binding domain pro... 98 2e-20
Medtr4g086860.1 | LA-related protein 6 LA RNA-binding domain pro... 61 2e-09
Medtr2g019620.1 | LA-related protein 6 LA RNA-binding domain pro... 59 1e-08
Medtr7g117595.3 | LA-related protein 6 LA RNA-binding domain pro... 57 3e-08
Medtr7g117595.1 | LA-related protein 6 LA RNA-binding domain pro... 57 4e-08
Medtr3g114450.2 | LA-related protein 6 LA RNA-binding domain pro... 56 8e-08
Medtr7g117595.2 | LA-related protein 6 LA RNA-binding domain pro... 54 5e-07
>Medtr5g022790.1 | ATP synthase, A subunit | HC |
chr5:9032818-9026232 | 20130731
Length = 670
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 280/525 (53%), Positives = 319/525 (60%), Gaps = 50/525 (9%)
Query: 1 MAMTGDHDSS---DDIQSRRTARIPVAASPWNQVVRGXXXXXXXXXXXXXXXXXXXXDAX 57
M M G+H S+ D++QSRR PWNQVVRG
Sbjct: 1 MEMIGNHSSNHSPDNLQSRRLP-------PWNQVVRGESESIAAVPAVSLSEESFPIVTA 53
Query: 58 XXXXXXXXXXXXXXXX----------XXPAWNRPSNGAGL-EVQPVMDAQSWPALSEAAR 106
PAWNR S G+ EVQPVMDA SWPALS++AR
Sbjct: 54 PVDDSTSAEVISDNADNGGERNGGTGKRPAWNRSSGNGGVSEVQPVMDAHSWPALSDSAR 113
Query: 107 AKMKSESSKGLLDIASVPXXXXXXXXXXXXXXXXXXXXXXVNNNTVPTHQKPIKHNSSNT 166
KSESSKGLLD +SV VNN PT QK IKHNSSN
Sbjct: 114 GSTKSESSKGLLDGSSVSPWQGMESTPSSSMQRQVGDNVNVNN-MAPTRQKSIKHNSSNA 172
Query: 167 SSYGGHQHQSAPQVSNAATGSHNSY---------------------PKDHTHRSGYVSND 205
SS GGH QSAPQVS AATGSH S P+DHT RSG+V +D
Sbjct: 173 SSNGGHTQQSAPQVSIAATGSHTSSSRDHTQSPRDHTQSPRDHAQSPRDHTQRSGFVPSD 232
Query: 206 HPQQRNTFRNRNNGPHQRGDGAHHH-NYGNRRDQDWNTRRNFNGRDIHMXXXXXXXXXXX 264
HPQQRN+FR+RN GPHQRGDG+HHH NYGNRRDQDWN+RRN+NGRD+H+
Sbjct: 233 HPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNSRRNYNGRDMHVPPRVSPRIIRP 292
Query: 265 XXXXXXXXXXXXXXXXVRPFGGHIGFHELXXXXXXXXXXXXXXDSLRGVPFVPPVPHHAM 324
+RPFGGH+GFHEL DSLRGVPFVPP+P +
Sbjct: 293 SLPPNSAPFIHPPP--LRPFGGHMGFHELAAPVVLFAGPPPPIDSLRGVPFVPPMP---L 347
Query: 325 FFAGSDPQLHTKIVNQIDYYFSNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNI 384
++AG DPQLH+KIVNQIDYYFSNENLVKD FLR+NMD QGWVPI LIAGFKKVM LTDNI
Sbjct: 348 YYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWVPITLIAGFKKVMDLTDNI 407
Query: 385 QLILDAVQTSYVVEVQGDKIRRRNDWMRWIMPSP-QFPNVTSHGVLNHDKLAEQLHNISL 443
QLI+DA++TS VVEVQGDKIRR+NDW +WIMPSP QFPNVTS VLN D LAE++ NI+L
Sbjct: 408 QLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTSPEVLNQDMLAEKMRNIAL 467
Query: 444 ETTNYDIPGRLGVLSDNSQHGPVFGDLNNPMQLSTSESAGQVGFH 488
ETT YD G VL DNS+H P FGDL++P+QLSTSE G+V H
Sbjct: 468 ETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSEITGEVDIH 512
>Medtr5g022790.3 | ATP synthase, A subunit | HC |
chr5:9031583-9028239 | 20130731
Length = 387
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/373 (62%), Positives = 264/373 (70%), Gaps = 28/373 (7%)
Query: 149 NNTVPTHQKPIKHNSSNTSSYGGHQHQSAPQVSNAATGSHNSY----------------- 191
NN PT QK IKHNSSN SS GGH QSAPQVS AATGSH S
Sbjct: 20 NNMAPTRQKSIKHNSSNASSNGGHTQQSAPQVSIAATGSHTSSSRDHTQSPRDHTQSPRD 79
Query: 192 ----PKDHTHRSGYVSNDHPQQRNTFRNRNNGPHQRGDGAHHH-NYGNRRDQDWNTRRNF 246
P+DHT RSG+V +DHPQQRN+FR+RN GPHQRGDG+HHH NYGNRRDQDWN+RRN+
Sbjct: 80 HAQSPRDHTQRSGFVPSDHPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNSRRNY 139
Query: 247 NGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGFHELXXXXXXXXXXXXX 306
NGRD+H+ +RPFGGH+GFHEL
Sbjct: 140 NGRDMHVPPRVSPRIIRPSLPPNSAPFIHPPP--LRPFGGHMGFHELAAPVVLFAGPPPP 197
Query: 307 XDSLRGVPFVPPVPHHAMFFAGSDPQLHTKIVNQIDYYFSNENLVKDTFLRQNMDDQGWV 366
DSLRGVPFVPP+P +++AG DPQLH+KIVNQIDYYFSNENLVKD FLR+NMD QGWV
Sbjct: 198 IDSLRGVPFVPPMP---LYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWV 254
Query: 367 PIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQGDKIRRRNDWMRWIMPSP-QFPNVTS 425
PI LIAGFKKVM LTDNIQLI+DA++TS VVEVQGDKIRR+NDW +WIMPSP QFPNVTS
Sbjct: 255 PITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTS 314
Query: 426 HGVLNHDKLAEQLHNISLETTNYDIPGRLGVLSDNSQHGPVFGDLNNPMQLSTSESAGQV 485
VLN D LAE++ NI+LETT YD G VL DNS+H P FGDL++P+QLSTSE G+V
Sbjct: 315 PEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSEITGEV 374
Query: 486 GFHGSDHSISARN 498
HGSD S S RN
Sbjct: 375 DIHGSDFSTSRRN 387
>Medtr5g022790.2 | ATP synthase, A subunit | HC |
chr5:9031583-9026232 | 20130731
Length = 535
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/363 (62%), Positives = 257/363 (70%), Gaps = 28/363 (7%)
Query: 149 NNTVPTHQKPIKHNSSNTSSYGGHQHQSAPQVSNAATGSHNSY----------------- 191
NN PT QK IKHNSSN SS GGH QSAPQVS AATGSH S
Sbjct: 20 NNMAPTRQKSIKHNSSNASSNGGHTQQSAPQVSIAATGSHTSSSRDHTQSPRDHTQSPRD 79
Query: 192 ----PKDHTHRSGYVSNDHPQQRNTFRNRNNGPHQRGDGAHHH-NYGNRRDQDWNTRRNF 246
P+DHT RSG+V +DHPQQRN+FR+RN GPHQRGDG+HHH NYGNRRDQDWN+RRN+
Sbjct: 80 HAQSPRDHTQRSGFVPSDHPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNSRRNY 139
Query: 247 NGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGFHELXXXXXXXXXXXXX 306
NGRD+H+ +RPFGGH+GFHEL
Sbjct: 140 NGRDMHVPPRVSPRIIRPSLPPNSAPFIHPPP--LRPFGGHMGFHELAAPVVLFAGPPPP 197
Query: 307 XDSLRGVPFVPPVPHHAMFFAGSDPQLHTKIVNQIDYYFSNENLVKDTFLRQNMDDQGWV 366
DSLRGVPFVPP+P +++AG DPQLH+KIVNQIDYYFSNENLVKD FLR+NMD QGWV
Sbjct: 198 IDSLRGVPFVPPMP---LYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWV 254
Query: 367 PIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQGDKIRRRNDWMRWIMPSP-QFPNVTS 425
PI LIAGFKKVM LTDNIQLI+DA++TS VVEVQGDKIRR+NDW +WIMPSP QFPNVTS
Sbjct: 255 PITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTS 314
Query: 426 HGVLNHDKLAEQLHNISLETTNYDIPGRLGVLSDNSQHGPVFGDLNNPMQLSTSESAGQV 485
VLN D LAE++ NI+LETT YD G VL DNS+H P FGDL++P+QLSTSE G+V
Sbjct: 315 PEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSEITGEV 374
Query: 486 GFH 488
H
Sbjct: 375 DIH 377
>Medtr8g075120.1 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr8:31755422-31758254 | 20130731
Length = 455
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 184/456 (40%), Positives = 229/456 (50%), Gaps = 34/456 (7%)
Query: 22 PVAASPWNQVVRGXXXXXXXXXXXXXXXXXXXXDAXXXXXXXXXXXXXXXXXXXPAWNRP 81
P AA+PW+Q+V D P W++P
Sbjct: 10 PPAAAPWSQIVASTAASAVPHSSPSPPPSSAVVDTFTVTEAAEDTDNTSGGKR-PVWSKP 68
Query: 82 SNGAGLEVQPVMDAQSWPALSEAARAKMKS---------ESSKGLLDIASVPXXXXXXXX 132
SN A V MDA SWPALSE+A+A KS E K LD++++P
Sbjct: 69 SNAAASSV---MDADSWPALSESAKAPAKSPPPPPSPPQELVKLSLDLSTLPQSQGTGSM 125
Query: 133 XXXXXXXXXXXXXXVNNNTVPTHQKPIKHNSSNTSSYGGHQ--HQSAPQVSNAA---TGS 187
N +VPTHQKP + ++SN SS GG Q S PQ A + +
Sbjct: 126 LHSPQKQVKDTAGNSNVTSVPTHQKPFRRSNSNASSNGGRQPPQMSVPQGFVAVPPGSHN 185
Query: 188 HNSYPKDHTHRSGYVSNDHPQQRNTFRNRNNGPHQ-RGDGAHHHNYGNRRDQD-----WN 241
HNS DH R+G+V ND PQ+RN+FRNRN G Q RGDG+HH N G+RRDQD WN
Sbjct: 186 HNSAQIDHLPRAGFVPNDQPQRRNSFRNRNGGGLQPRGDGSHHFNSGSRRDQDRGNQDWN 245
Query: 242 T-RRNFNGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGFHELXXXXXXX 300
RNFN RD + + P+ G G+H+L
Sbjct: 246 AHNRNFNNRDNYRSPRFVPQFVRPPPPTNHAQYYPPPPPPIPPYMGSYGYHDLTLQMMYG 305
Query: 301 XXXXXXXDSLRGVPFVPPVPHHAMFFAGSDPQLHTKIVNQIDYYFSNENLVKDTFLRQNM 360
+ R VPFV P+ A+FF D +L TKIVNQIDYYFS+ NL DT+L++NM
Sbjct: 306 PPLHV--EPPRSVPFVQPI-SSAIFFPPPDSELQTKIVNQIDYYFSDLNLNNDTYLKRNM 362
Query: 361 DDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQGDKIRRRNDWMRWIMPSPQF 420
DDQGWVP+ LIAGF KV LTDNIQ+++DAV+TS VVEVQ DKIRRRN WI S QF
Sbjct: 363 DDQGWVPLNLIAGFNKVKLLTDNIQIVVDAVRTSSVVEVQDDKIRRRN----WITLSSQF 418
Query: 421 PNVTSHGVLNHDKLAEQLHNISLETTNYDIPGRLGV 456
NV + +LA+ + NI LET G L V
Sbjct: 419 HNVNGSQIA--AQLAKNIQNIDLETNKNGAFGELHV 452
>Medtr1g025920.1 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr1:8346097-8339214 | 20130731
Length = 546
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 169/370 (45%), Gaps = 47/370 (12%)
Query: 76 PAWNR-PSNGAGLEVQPVMDAQSWPALSEAAR--AKMKSESSKGLLDIA-------SVPX 125
PAWN+ P NG +E+ PVM A+SWPALSE+A+ K+ ESS + S
Sbjct: 132 PAWNKQPLNGVAVEIGPVMGAESWPALSESAKIPGKLPPESSSSKIAPPAAVDGSPSTSQ 191
Query: 126 XXXXXXXXXXXXXXXXXXXXXVNNNTVPTHQKPIKHNSSNTSSYGGHQ------------ 173
+ NN +P +P++ S + Q
Sbjct: 192 GPIISHSPQRQGSTSNTKSSSMANNNLPNRPRPMRRISGSNIGPCPAQSSLSNPPTPPPL 251
Query: 174 -----HQSAPQVS--NAATGSHNSYPKDHTHRSGYVSNDHPQQRNTFRNRNNGPHQRGDG 226
+Q P VS N +S P+DH + + + P + R + G H RGDG
Sbjct: 252 PPYPVYQLPPAVSYPNMLPSIPDSSPRDHHRNNNW--DARPFVGGSSRRGHFGSHPRGDG 309
Query: 227 AHHHN-YGNRRDQDWNTRRNF-NGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPF 284
++H N Y +RR+ D R N+ N RD H + PF
Sbjct: 310 SYHQNSYSSRREHD---RGNYANTRDAHAPQPRMPPRGILRPPPPSTAAFLGPQT-IGPF 365
Query: 285 GGHIGFHELXXXXXXXXXXXXXXDSLRGVPFVPPVPHHAMFFAGSDPQLHTKIVNQIDYY 344
+ + + D RG+P P +P A FF ++ L IVNQIDYY
Sbjct: 366 PAPVAYPDFYYFPTVPL------DPFRGMPVFPHMPSPATFFPAAESSLSNVIVNQIDYY 419
Query: 345 FSNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQGDKI 404
FS+ NL D FL+ NMD++GWVPI LIA F +V +LT NIQLILD+++ S VV+VQGDK+
Sbjct: 420 FSDINLANDEFLKSNMDEEGWVPITLIANFPRVKNLTSNIQLILDSMRNSNVVDVQGDKL 479
Query: 405 RRRNDWMRWI 414
RRRN WI
Sbjct: 480 RRRN----WI 485
>Medtr1g025920.2 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr1:8346097-8339222 | 20130731
Length = 518
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 159/356 (44%), Gaps = 43/356 (12%)
Query: 76 PAWNR-PSNGAGLEVQPVMDAQSWPALSEAAR--AKMKSESSKGLLDIA-------SVPX 125
PAWN+ P NG +E+ PVM A+SWPALSE+A+ K+ ESS + S
Sbjct: 132 PAWNKQPLNGVAVEIGPVMGAESWPALSESAKIPGKLPPESSSSKIAPPAAVDGSPSTSQ 191
Query: 126 XXXXXXXXXXXXXXXXXXXXXVNNNTVPTHQKPIKHNSSNTSSYGGHQ------------ 173
+ NN +P +P++ S + Q
Sbjct: 192 GPIISHSPQRQGSTSNTKSSSMANNNLPNRPRPMRRISGSNIGPCPAQSSLSNPPTPPPL 251
Query: 174 -----HQSAPQVS--NAATGSHNSYPKDHTHRSGYVSNDHPQQRNTFRNRNNGPHQRGDG 226
+Q P VS N +S P+DH + + + P + R + G H RGDG
Sbjct: 252 PPYPVYQLPPAVSYPNMLPSIPDSSPRDHHRNNNW--DARPFVGGSSRRGHFGSHPRGDG 309
Query: 227 AHHHN-YGNRRDQDWNTRRNF-NGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPF 284
++H N Y +RR+ D R N+ N RD H + PF
Sbjct: 310 SYHQNSYSSRREHD---RGNYANTRDAH-APQPRMPPRGILRPPPPSTAAFLGPQTIGPF 365
Query: 285 GGHIGFHELXXXXXXXXXXXXXXDSLRGVPFVPPVPHHAMFFAGSDPQLHTKIVNQIDYY 344
+ + + D RG+P P +P A FF ++ L IVNQIDYY
Sbjct: 366 PAPVAYPDFYYFPTVPL------DPFRGMPVFPHMPSPATFFPAAESSLSNVIVNQIDYY 419
Query: 345 FSNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQ 400
FS+ NL D FL+ NMD++GWVPI LIA F +V +LT NIQLILD+++ S VV+VQ
Sbjct: 420 FSDINLANDEFLKSNMDEEGWVPITLIANFPRVKNLTSNIQLILDSMRNSNVVDVQ 475
>Medtr3g114450.1 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr3:53444494-53441023 | 20130731
Length = 471
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 168/371 (45%), Gaps = 41/371 (11%)
Query: 76 PAWNRPSNGAGL-EVQPVMDAQSWPALSEAARAKMKSES-----SKGLLDIASVPXXXXX 129
PAW SNG + EV PVM A SWPALS AK+ S+S G + I+ P
Sbjct: 90 PAWKNTSNGLVVAEVSPVMGAVSWPALSAKPSAKLTSDSISAVDGAGSISISQGPVISNS 149
Query: 130 XXXXXXXXXXXXXXXXXVNNNTVPT--HQKPIKHNSSNTSSYG--GHQHQSAPQVSNAAT 185
+N++ + QKP++ N + G + + PQV++ +
Sbjct: 150 PQKQATATAANARHTPPMNHSHSVSNRQQKPMERGGGNNNEPGPLSNNLSNPPQVNHQPS 209
Query: 186 GSHNSYPKDHTHRSGYVSNDHPQQRNTFRNRNN-GPHQRGDG--------AHHHNYGNRR 236
+ +P + ++ + +++N N GP G +H NYG+R
Sbjct: 210 VAP-PFPVLQITPNTFLVDG----VQSYKNNNGWGPRSPAGGYGLPVDEHSHRGNYGHRP 264
Query: 237 DQDWNTRRN------FNGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGF 290
++ TRRN N RD H +RPF GF
Sbjct: 265 RNNYGTRRNQDPGNTMNTRDAHPPQHRMHSEGFLRPTLPNSAYLGSQPMPMRPFLNPAGF 324
Query: 291 HELXXXXXXXXXXXXXXDSLRGVPFVPPVPHHAMFFAGSDPQLHTK-----IVNQIDYYF 345
HE + G+PF+ P AMFF ++ T I+ QIDYYF
Sbjct: 325 HEFYYYPTLQF------EPFGGMPFLTHPPPPAMFFPVAEETPPTTPPTNIILKQIDYYF 378
Query: 346 SNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQGDKIR 405
S+ NL D FL+ NMD+ GWVP+ LIA F +V +LT+NI+LILD+++ S VVEV GDK+R
Sbjct: 379 SDVNLTNDEFLKSNMDEHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSVVEVNGDKLR 438
Query: 406 RRNDWMRWIMP 416
+R +W R++ P
Sbjct: 439 KRKEWARFLSP 449
>Medtr3g114340.1 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr3:53401536-53399026 | 20130731
Length = 432
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 158/366 (43%), Gaps = 44/366 (12%)
Query: 82 SNGAGL-EVQPVMDAQSWPALSEAARAKMKSESSKGLLDIASVPXXXXXXXXXXXXXXXX 140
SNG + EV PVM A SWPALS AK+ S+S + + S+
Sbjct: 27 SNGLVVAEVNPVMGAVSWPALSAKPSAKLTSDS---ISAVGSISISQGPVISNSPQKQAT 83
Query: 141 XXXXXXVNNNTVPT---------HQKPIKHNSSNTSSYGGHQHQ-SAPQVSNAATGSHNS 190
+T P QKP++ N + G + S P +N
Sbjct: 84 ATATAANARHTPPMNHSHSVSNRQQKPMERGGVNNNEPGPLSNNLSNPPQANHQPSVSPP 143
Query: 191 YPKDHTHRSGYVSNDHPQQRNTFRNRNN-GPHQRGDG--------AHHHNYGNRRDQDWN 241
+P + ++ + +++N N GP G +H NYG+R ++
Sbjct: 144 FPVLQIPPNTFLVDG----VQSYKNNNGWGPRSPAGGYGLPVDEHSHRGNYGHRPRNNYG 199
Query: 242 TRRN------FNGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGFHELXX 295
TRRN N RD H +RPF GFHE
Sbjct: 200 TRRNQDPGNTMNTRDAHPPQHRMHSEGFLRPTLPNSAYLGSQPMPMRPFLNPAGFHEFYY 259
Query: 296 XXXXXXXXXXXXDSLRGVPFVPPVPHHAMFFAGSDPQLHTK-----IVNQIDYYFSNENL 350
+ G+PF+ P AMFF ++ T I+ QIDYYFS+ NL
Sbjct: 260 YPTLQF------EPFGGMPFLTHPPPPAMFFPVAEETPPTTPPTNIILKQIDYYFSDVNL 313
Query: 351 VKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQGDKIRRRNDW 410
D FL+ NMD+ GWVP+ LIA F +V +LT+NI+LILD+++ S VVEV GDK+R+R +W
Sbjct: 314 TNDEFLKSNMDEHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSVVEVNGDKLRKRKEW 373
Query: 411 MRWIMP 416
R++ P
Sbjct: 374 ARFLSP 379
>Medtr5g088200.1 | LA-related protein 2 LA RNA-binding domain
protein | HC | chr5:38241687-38234903 | 20130731
Length = 911
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 59/85 (69%)
Query: 333 LHTKIVNQIDYYFSNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQ 392
L I+ QI+YYFS+ENL D +L MDDQGWVPI +A FK+V ++ +I I+D +Q
Sbjct: 314 LRASILKQIEYYFSDENLHNDRYLIGLMDDQGWVPISTVADFKRVKRMSTDIPFIVDVLQ 373
Query: 393 TSYVVEVQGDKIRRRNDWMRWIMPS 417
S VEVQ DKIR+RN+W +WI S
Sbjct: 374 NSDNVEVQDDKIRKRNNWSKWIQTS 398
>Medtr3g114450.3 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr3:53444494-53442560 | 20130731
Length = 411
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 137/332 (41%), Gaps = 41/332 (12%)
Query: 76 PAWNRPSNGAGL-EVQPVMDAQSWPALSEAARAKMKSES-----SKGLLDIASVPXXXXX 129
PAW SNG + EV PVM A SWPALS AK+ S+S G + I+ P
Sbjct: 90 PAWKNTSNGLVVAEVSPVMGAVSWPALSAKPSAKLTSDSISAVDGAGSISISQGPVISNS 149
Query: 130 XXXXXXXXXXXXXXXXXVNNNTVPTH--QKPIKHNSSNTSSYG--GHQHQSAPQVSNAAT 185
+N++ ++ QKP++ N + G + + PQV++ +
Sbjct: 150 PQKQATATAANARHTPPMNHSHSVSNRQQKPMERGGGNNNEPGPLSNNLSNPPQVNHQPS 209
Query: 186 GSHNSYPKDHTHRSGYVSNDHPQQRNTFRNRNN-GPHQRGDG--------AHHHNYGNRR 236
+ +P + ++ + +++N N GP G +H NYG+R
Sbjct: 210 VAP-PFPVLQITPNTFLVDG----VQSYKNNNGWGPRSPAGGYGLPVDEHSHRGNYGHRP 264
Query: 237 DQDWNTRRN------FNGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGF 290
++ TRRN N RD H +RPF GF
Sbjct: 265 RNNYGTRRNQDPGNTMNTRDAHPPQHRMHSEGFLRPTLPNSAYLGSQPMPMRPFLNPAGF 324
Query: 291 HELXXXXXXXXXXXXXXDSLRGVPFVPPVPHHAMFFAGSDPQLHTK-----IVNQIDYYF 345
HE + G+PF+ P AMFF ++ T I+ QIDYYF
Sbjct: 325 HEFYYYPTLQF------EPFGGMPFLTHPPPPAMFFPVAEETPPTTPPTNIILKQIDYYF 378
Query: 346 SNENLVKDTFLRQNMDDQGWVPIKLIAGFKKV 377
S+ NL D FL+ NMD+ GWVP+ LIA F +V
Sbjct: 379 SDVNLTNDEFLKSNMDEHGWVPVSLIANFPRV 410
>Medtr4g086860.1 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr4:34040137-34037050 | 20130731
Length = 404
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 330 DPQLHTKIVNQIDYYFSNENLVK-DTFLRQ-NMDDQGWVPIKLIAGFKKVMHLTDNIQLI 387
+P L KIV Q++Y FS+ +L+ ++F +Q N D +G+VPI +IA KK+ L +NI L+
Sbjct: 96 NPDLQQKIVKQVEYQFSDLSLLANESFQKQMNKDPEGYVPITVIASTKKIKSLVNNIHLL 155
Query: 388 LDAVQ--TSYVVEVQGDKIRRR 407
A++ + V+ G K++R+
Sbjct: 156 TQAIRHSSKLVLSADGKKVKRK 177
>Medtr2g019620.1 | LA-related protein 6 LA RNA-binding domain
protein, putative | HC | chr2:6438990-6443888 | 20130731
Length = 406
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 320 PHHAMFFAGSDPQLHTKIVNQIDYYFSNENLVKDTFLRQ--NMDDQGWVPIKLIAGFKKV 377
P H S L KI+ Q++YYFS+ENL D ++ + +G+VPI IA F+K+
Sbjct: 90 PDHVAETVVSLDDLKLKIIKQVEYYFSDENLPTDKYMLSLVKRNKEGFVPIPAIASFRKM 149
Query: 378 MHLTDNIQLILDAVQTSYVVEVQGD--KIRRRN 408
LT + I A++ S ++ V GD +++R N
Sbjct: 150 KRLTRDHLFIAAALKESSLLVVSGDGKRVKRLN 182
>Medtr7g117595.3 | LA-related protein 6 LA RNA-binding domain
protein, putative | HC | chr7:48763422-48774734 |
20130731
Length = 424
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 329 SDPQLHTKIVNQIDYYFSNENLVKDTFLRQ--NMDDQGWVPIKLIAGFKKVMHLTDNIQL 386
SD Q H KI+ Q++YYFS+ NL L + N D +G+VPI ++A FKK+ L +
Sbjct: 110 SDEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQ 169
Query: 387 ILDAVQTS--YVVEVQGDKIRRR 407
+ + ++ S VV G KI+R+
Sbjct: 170 LANVLRNSSKLVVSEDGKKIKRQ 192
>Medtr7g117595.1 | LA-related protein 6 LA RNA-binding domain
protein, putative | HC | chr7:48763422-48774734 |
20130731
Length = 440
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 329 SDPQLHTKIVNQIDYYFSNENLVKDTFLRQ--NMDDQGWVPIKLIAGFKKVMHLTDNIQL 386
SD Q H KI+ Q++YYFS+ NL L + N D +G+VPI ++A FKK+ L +
Sbjct: 110 SDEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQ 169
Query: 387 ILDAVQTS--YVVEVQGDKIRRR 407
+ + ++ S VV G KI+R+
Sbjct: 170 LANVLRNSSKLVVSEDGKKIKRQ 192
>Medtr3g114450.2 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr3:53444494-53441023 | 20130731
Length = 379
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 113/300 (37%), Gaps = 41/300 (13%)
Query: 76 PAWNRPSNGAGL-EVQPVMDAQSWPALSEAARAKMKSES-----SKGLLDIASVPXXXXX 129
PAW SNG + EV PVM A SWPALS AK+ S+S G + I+ P
Sbjct: 90 PAWKNTSNGLVVAEVSPVMGAVSWPALSAKPSAKLTSDSISAVDGAGSISISQGPVISNS 149
Query: 130 XXXXXXXXXXXXXXXXXVNNNTVPT--HQKPIKHNSSNTSSYG--GHQHQSAPQVSNAAT 185
+N++ + QKP++ N + G + + PQV++ +
Sbjct: 150 PQKQATATAANARHTPPMNHSHSVSNRQQKPMERGGGNNNEPGPLSNNLSNPPQVNHQPS 209
Query: 186 GSHNSYPKDHTHRSGYVSNDHPQQRNTFRNRNN-GPHQRGDG--------AHHHNYGNRR 236
+ +P + ++ + +++N N GP G +H NYG+R
Sbjct: 210 VAP-PFPVLQITPNTFLVDG----VQSYKNNNGWGPRSPAGGYGLPVDEHSHRGNYGHRP 264
Query: 237 DQDWNTRRN------FNGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGF 290
++ TRRN N RD H +RPF GF
Sbjct: 265 RNNYGTRRNQDPGNTMNTRDAHPPQHRMHSEGFLRPTLPNSAYLGSQPMPMRPFLNPAGF 324
Query: 291 HELXXXXXXXXXXXXXXDSLRGVPFVPPVPHHAMFFAGSDPQLHTK-----IVNQIDYYF 345
HE + G+PF+ P AMFF ++ T I+ QIDYYF
Sbjct: 325 HEF------YYYPTLQFEPFGGMPFLTHPPPPAMFFPVAEETPPTTPPTNIILKQIDYYF 378
>Medtr7g117595.2 | LA-related protein 6 LA RNA-binding domain
protein, putative | HC | chr7:48763422-48773797 |
20130731
Length = 363
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 329 SDPQLHTKIVNQIDYYFSNENLVKDTFLRQ--NMDDQGWVPIKLIAGFKKVMHLTDNIQL 386
SD Q H KI+ Q++YYFS+ NL L + N D +G+VPI ++A FKK+ L +
Sbjct: 110 SDEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQ 169
Query: 387 ILDAVQTS--YVVEVQGDKIRRR 407
+ + ++ S VV G KI+R+
Sbjct: 170 LANVLRNSSKLVVSEDGKKIKRQ 192