Miyakogusa Predicted Gene

Lj2g3v1643230.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1643230.3 tr|J9ANG3|J9ANG3_BACCE ATP-dependent DNA helicase
RecQ OS=Bacillus cereus BtB2-4 PE=4
SV=1,28.02,0.00000000000007,seg,NULL; DNA HELICASE RECQ,NULL; DNA
HELICASE RECQ FAMILY MEMBER,NULL; HRDC-like,HRDC-like;
HRDC,He,CUFF.37596.3
         (395 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g063040.1 | ATP-dependent DNA helicase RecQ | HC | chr3:28...   504   e-143

>Medtr3g063040.1 | ATP-dependent DNA helicase RecQ | HC |
           chr3:28524625-28534220 | 20130731
          Length = 908

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/394 (66%), Positives = 301/394 (76%), Gaps = 25/394 (6%)

Query: 13  FKILATSESGGFSXXXXXXXXXXXXXXXXXARSVGTAPYALCGDQTIKKIALTRPSTKAR 72
            KIL TSES GFS                 A+SVGTAPYALCGDQTIKKIALTRPS+KAR
Sbjct: 529 IKILPTSESEGFSEAEGQLYQMLLEERLKLAKSVGTAPYALCGDQTIKKIALTRPSSKAR 588

Query: 73  LANIDGVNQHLLTRYGDHFLGVIQKLSQGLNLSLDGEASMQTNEVRKVSPVNINKSRKLT 132
           LA IDGVNQHL+TRYG++F+  I+KLS+ LNLSLDG  S+QT+EVRKVSP+  NKS KL+
Sbjct: 589 LALIDGVNQHLVTRYGEYFIQAIEKLSRELNLSLDGVPSIQTSEVRKVSPIVTNKSTKLS 648

Query: 133 PAKFEAWKMWHEDGLSIEKIANFPGRSAPIKEQTVAEYLLEAAQEGLPFDWTRFCEMIGL 192
            AKF+AWKMWHE+GLS++KIANFPGRSAPI+EQTVA+YL++AAQEGLPFDW RFCE IGL
Sbjct: 649 GAKFDAWKMWHEEGLSLQKIANFPGRSAPIQEQTVAQYLMDAAQEGLPFDWPRFCEAIGL 708

Query: 193 TQEIMSEIQGAILKVGSEDKLKPIKNELPEDITYQHIKAYLTMRSCG---------GPQS 243
            Q+ +S IQ AI+KVGS DKLKPIKNELPE+ITY HIKAYLTMR+CG         G QS
Sbjct: 709 KQDYISAIQAAIVKVGSADKLKPIKNELPEEITYPHIKAYLTMRTCGISLESIQSEGHQS 768

Query: 244 GKDGEXXXXXXXXXXXXXXXXLSEPHLETCYKERPLEADITGKSLKENFDLEIDEVVLSG 303
            KDGE                LSEP LET   E  +EADI+ +S      +EIDEV  SG
Sbjct: 769 VKDGE---------AVNNASNLSEPPLETRNLESHIEADISTES-----TMEIDEVASSG 814

Query: 304 PVNGSTVQKLPLACEGEFTAKRQKVA--EEVKSVKLKATESSVVEWLKNLDEGATLIDVL 361
           PVNG  VQKLPL+CE EFT+KR K++  EEV  +KLKATESSVVEWLKN DEGATL D+L
Sbjct: 815 PVNGCQVQKLPLSCEEEFTSKRLKISETEEVNLIKLKATESSVVEWLKNHDEGATLTDML 874

Query: 362 EHFNGSDEDSVVEVLNCLECDFAIYKKGNMYRAM 395
           EHFNGS+EDS+VE+LN LE DF IYKKGNMYRAM
Sbjct: 875 EHFNGSNEDSIVELLNSLESDFLIYKKGNMYRAM 908