Miyakogusa Predicted Gene

Lj2g3v1601010.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1601010.2 Non Characterized Hit- tr|Q8C0U7|Q8C0U7_MOUSE
Putative uncharacterized protein OS=Mus musculus
GN=Ml,30.92,3e-18,MutL_C,MutL, C-terminal, dimerisation; DNA MISMATCH
REPAIR PROTEIN MLH3,NULL; DNA MISMATCH REPAIR PR,CUFF.37557.2
         (681 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal ...   922   0.0  
Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | H...    66   1e-10

>Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal
            domain protein | HC | chr5:9761916-9752005 | 20130731
          Length = 1232

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/699 (68%), Positives = 551/699 (78%), Gaps = 35/699 (5%)

Query: 14   FGSGVEIGGDFQKPFLKSCTTRKGSTLHEKALLVNDEHELQTDSFFIKKNLEEDYHSG-K 72
            FG   EIG +FQKPFLKSC+T+K S L+EK LLVNDE +LQTDSF+ K+NL ED+ SG K
Sbjct: 532  FGYDEEIGWNFQKPFLKSCSTQKDSILNEKTLLVNDELQLQTDSFWSKQNLGEDFCSGSK 591

Query: 73   DMFADPCLEVAKKLKTSKDTDFPFRAWSEENCLPPVSCNSGTQIRSSGSDDQLLNSEWFP 132
            D++  PC+EVAKKLK S+D+DF  +AW EENCLP  S  S TQI +SGSDD+L NSEW  
Sbjct: 592  DLYTRPCVEVAKKLKMSEDSDFLVKAWPEENCLPLDSWYSATQIGNSGSDDRLSNSEWHH 651

Query: 133  VCLDPSSQDTALGVHHTTDIDDI-GVSRDYKRI--------------------------- 164
            V  + SS+ TAL V+HT DI+D+ G SR  KRI                           
Sbjct: 652  VYQESSSRATALSVYHTNDINDLAGSSRCNKRIPRTPIFDDKENGNIFSYDLGGASRCST 711

Query: 165  RCTKLFYDKVNECDFSY-MSRNASQHHCLSSFANNGFNFDGAVDRDDIFDRLVDWTDFGD 223
            R T +F D+ N  +FSY MSRNA+Q  C SSFAN+GF+FDGAVD  +IF+RLVDW DF D
Sbjct: 712  RITHIFDDEENGYNFSYDMSRNANQDPCTSSFANSGFSFDGAVDCKEIFNRLVDWPDFHD 771

Query: 224  TYFTKRPDILDEEQDWLLHESSVRNCNRSSTDKGKREHFRHTSLGKNHERSKRSSSAPPF 283
            T+FTKR DIL EE D LL ES V  CNR +  KG R+ FRH +L K   RSKRS SAPPF
Sbjct: 772  THFTKRSDILIEEPDCLLPESCVIKCNRPNIIKGDRDLFRHPTLEKTRVRSKRSFSAPPF 831

Query: 284  HRSKRRFICLHQAPETIAKRSPGRASSPIFNHHEASD---PQQSPGALHTSTDDLLLQEF 340
            HRS+RRF  L+Q P+ +AKR  G AS P  +  EASD    Q SP AL  + +DLL    
Sbjct: 832  HRSRRRFFSLNQPPQMVAKRPSGLASDPASSLLEASDFKYSQHSPDALSPNNEDLL-DNL 890

Query: 341  KTNVKQSSEVLGDSKVNDIAETDGFESFSIQNSDPLRELISGEVQDSVDYRTKWRDCSPQ 400
            KTNVK+SSEVLG ++VND AET+GFESF++Q +DP RELIS EVQDSVDY TKWR C+PQ
Sbjct: 891  KTNVKRSSEVLGATQVNDTAETEGFESFNVQQNDPFRELISKEVQDSVDYGTKWRSCAPQ 950

Query: 401  IPKDDKLVDTQSQHNILDISSGFLHLAGDSLIPETISKKCLDDAKVLHQVDKKFIPIVAG 460
             PK+DK +D QSQ+NILDISSGFLHLAGDSLIP+TISKKCL+DAKVLHQVDKKFIPI+AG
Sbjct: 951  TPKNDK-IDIQSQNNILDISSGFLHLAGDSLIPDTISKKCLEDAKVLHQVDKKFIPIMAG 1009

Query: 461  RTLAIIDQHAADERIRLEELRQKVLSGEAKSITYLDAEQELVLPEIGYQLLHNYSEQIKD 520
            RTLA+IDQHA DERIRLE+LRQKVLSGEAK+ITYLDAEQELVLPEIGYQLLH+Y EQIKD
Sbjct: 1010 RTLAVIDQHAGDERIRLEDLRQKVLSGEAKAITYLDAEQELVLPEIGYQLLHSYREQIKD 1069

Query: 521  WGWICNIHGQHSESFRRNLDILNRHQMAFTLIAVPCILGANLNDVDLLEYLQQLADTDGS 580
            WGWICNIH Q+SESFRRNLD+LNR QM   L+AVPCILG NLNDVDLLE+LQQLADTDGS
Sbjct: 1070 WGWICNIHTQNSESFRRNLDLLNRQQMTIALVAVPCILGVNLNDVDLLEFLQQLADTDGS 1129

Query: 581  STMPPSVIRVLNSKACRGAIMFGDSLLPSECSLIVEELRLTSLCFQCAHGRPTTVPLVNL 640
            STMPPSV+R+LNSK+CRGAIMFGDSLLPSECSL+VEEL+ TSLCFQCAHGRPTTVPLVNL
Sbjct: 1130 STMPPSVVRLLNSKSCRGAIMFGDSLLPSECSLLVEELKHTSLCFQCAHGRPTTVPLVNL 1189

Query: 641  EALHNQIPKLGRMNDYSSDKWHGLQRCEISLERAARRLS 679
            EAL NQI KLG MN  SS+KWHGLQR E+S++RA +RLS
Sbjct: 1190 EALRNQIDKLGLMNKSSSNKWHGLQRHEVSIDRAVQRLS 1228


>Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | HC |
           chr1:39690274-39683612 | 20130731
          Length = 933

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 98/229 (42%), Gaps = 41/229 (17%)

Query: 438 KKCLDDAKVLHQVDKKFIPIVAGRTLAIIDQHAADERIRLEELRQKVLSGEAKSITYLDA 497
           K+     KV+ Q +  FI     + L I+DQHAADE+   E L Q          T L+ 
Sbjct: 719 KEYFSRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFECLSQS---------TILN- 768

Query: 498 EQELVLPEIGYQLLHNYSEQIKDWGWICNIHGQHSESFRRNLDILNRHQMA-----FTLI 552
           +Q L+ P    +L  +  E+I        +   H +  R+N   L     A     + L 
Sbjct: 769 QQPLLRP---IRLELSPEEEI--------VASIHMDIIRKNGFTLEEDLNAPPGCRYKLK 817

Query: 553 AVPCILGANLNDVDLLEYLQQLADTDG---------------SSTMPPSVIRVLNSKACR 597
           +VP          D+ + +  L+D DG                S  PP V  +L S+ACR
Sbjct: 818 SVPYSKNTMFGVEDVKDLISTLSDGDGHGECSIIGSYRQDSSDSICPPRVRAMLASRACR 877

Query: 598 GAIMFGDSLLPSECSLIVEELRLTSLCFQCAHGRPTTVPLVNLEALHNQ 646
            +IM GD+L  +E   I+E L      + C HGRPT   LV+L  +H +
Sbjct: 878 SSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKIHKR 926