Miyakogusa Predicted Gene

Lj2g3v1600990.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1600990.1 tr|G7K187|G7K187_MEDTR MutL DNA mismatch repair
protein OS=Medicago truncatula GN=MTR_5g024250 PE=4
,80.08,0,DNA_MISMATCH_REPAIR_1,DNA mismatch repair, conserved site;
DNA MISMATCH REPAIR PROTEIN MLH3,NULL; DN,CUFF.37553.1
         (266 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal ...   448   e-126
Medtr3g005810.1 | DNA mismatch repair protein MLH1, putative | H...   100   3e-21
Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | H...    96   3e-20

>Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal
           domain protein | HC | chr5:9761916-9752005 | 20130731
          Length = 1232

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/258 (82%), Positives = 237/258 (91%)

Query: 3   AIIRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSVFVNVGSCYLKVVDDGG 62
           A +RPLPE+VRSS+RS   LFD TR+VEELV+NSLDARATKVSVFV++GSCYLKVVDDGG
Sbjct: 2   ATVRPLPESVRSSIRSAFSLFDFTRIVEELVYNSLDARATKVSVFVDIGSCYLKVVDDGG 61

Query: 63  GITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRPNG 122
           GITRDGLELVGERYATSKFLNLADLNA S NFGFRGEALASISEVSLLEIVTR YGRPNG
Sbjct: 62  GITRDGLELVGERYATSKFLNLADLNATSENFGFRGEALASISEVSLLEIVTRAYGRPNG 121

Query: 123 YRKVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRKYMQSSPNKVLQLIKKSAMRL 182
           YRKVLKGCKC+YLG+DDDRKEVGTTV+V E+FYNQPVRRK +QSSPNKVLQ IKK  MRL
Sbjct: 122 YRKVLKGCKCIYLGIDDDRKEVGTTVIVSEIFYNQPVRRKQIQSSPNKVLQSIKKCVMRL 181

Query: 183 ALVHSSISFNVVDIEREAELFCTHSASSPLSLVTSGFGLEVTSSLHQLDVENDTIKLSGY 242
           ALV  +ISF VVDIERE ELFC+HSA+SPLSLVT+GFG+EVT+SLH+L+VEND IKL+GY
Sbjct: 182 ALVCPNISFKVVDIEREYELFCSHSAASPLSLVTTGFGVEVTNSLHELEVENDIIKLTGY 241

Query: 243 VSSPCNTLQMKALQYVCI 260
           +S PCNTL MKALQY+ I
Sbjct: 242 ISGPCNTLDMKALQYLYI 259


>Medtr3g005810.1 | DNA mismatch repair protein MLH1, putative | HC |
           chr3:403887-391690 | 20130731
          Length = 719

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 133/256 (51%), Gaps = 27/256 (10%)

Query: 5   IRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSVFVNVGSCYL-KVVDDGGG 63
           I+ L E+V + + +G  +      V+ELV NSLDA +T +++ +  G   L +V DDG G
Sbjct: 7   IQRLAESVVNRIAAGEVIQRPVSAVKELVENSLDAASTSINLTIKDGGLKLIQVSDDGHG 66

Query: 64  ITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRPNGY 123
           I R+ L ++ ER+ TSK     DL  I+   GFRGEALAS++ V+ + + T T G+ +GY
Sbjct: 67  IRREDLPILCERHTTSKLSAFEDLQRITS-MGFRGEALASMTYVAHVTVTTITKGQLHGY 125

Query: 124 R---------KVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRKYMQSSPNKVLQL 174
           R         +  + C  +           GT ++V  LFYN   R+K +Q+S +   ++
Sbjct: 126 RVSYRDGVMEQEPRPCAAVK----------GTQIMVENLFYNMAARKKTLQNSSDDYSKI 175

Query: 175 IKKSAMRLALVHSSISFNVVDIEREAELFCTHSASSPLSLVTSGFGLEVTSSLHQLDV-E 233
           +   + R A+ H+++SF+            T + SS L  + + +G+    +L ++   +
Sbjct: 176 VDVVS-RFAIHHTNVSFSCRKHGAVKADVHTVATSSRLDAIRTVYGVSAAHNLIEVQASD 234

Query: 234 NDT----IKLSGYVSS 245
           ND      ++ GYVS+
Sbjct: 235 NDPSSSIFEMHGYVSN 250


>Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | HC |
           chr1:39690274-39683612 | 20130731
          Length = 933

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 3/162 (1%)

Query: 2   AAIIRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSV-FVNVGSCYLKVVDD 60
           + II+P+ + +   + SG  + DL+  V+ELV NSLDA AT + +   + G  + +V+D+
Sbjct: 5   SQIIKPIAKGIVHRICSGQVILDLSSAVKELVENSLDAGATSIEISLKDFGEEWFQVIDN 64

Query: 61  GGGITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRP 120
           G GI+ +  +++G ++ TSK     DL +++  FGFRGEAL+S+  +  L I TRT   P
Sbjct: 65  GCGISPNSFKVLGLKHHTSKLSEFHDLQSLT-TFGFRGEALSSLCALGNLTIETRTVNEP 123

Query: 121 NGYRKVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRK 162
                       L +      +++GTTV V++LF + PVR K
Sbjct: 124 VATHLTFNHSGVL-VAEKKIARQIGTTVTVKKLFSSLPVRSK 164