Miyakogusa Predicted Gene

Lj2g3v1599690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1599690.1 Non Characterized Hit- tr|I3SLN7|I3SLN7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,seg,NULL;
no description,Ribosomal protein L5 domain; RIBOSOMAL_L5,Ribosomal
protein L5, conserved s,CUFF.37550.1
         (267 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g078800.1 | 50S ribosomal protein L5P | HC | chr7:29842898...   386   e-107

>Medtr7g078800.1 | 50S ribosomal protein L5P | HC |
           chr7:29842898-29839942 | 20130731
          Length = 268

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/248 (76%), Positives = 215/248 (86%), Gaps = 4/248 (1%)

Query: 19  AQFRPSPPQFSPHGIR-HGNA-VVSVKATAAGAVLVEKSEAETVFRLKRTYTEKVIPKLV 76
           +QFR  P QFS   +  HGN  VVSVKA A+GAVLVEKSEAETV+RLK TY +K++P L+
Sbjct: 17  SQFRALPTQFSSSSLLCHGNNRVVSVKADASGAVLVEKSEAETVYRLKTTYNDKIVPLLM 76

Query: 77  EEFSYTNIHQVPKVKKIVVNCGIGEAAQNAKGLDAAVNDLALITGQRPVKTRARTSVATF 136
           EEFSYTNIHQVPKVKKIVVNCGIGEAAQNAKGLDAA+ DLALITGQRPVKTRAR SVATF
Sbjct: 77  EEFSYTNIHQVPKVKKIVVNCGIGEAAQNAKGLDAAILDLALITGQRPVKTRARNSVATF 136

Query: 137 KIREGQPLGIAVTLRGKVMYSFLDRLVNLGFPRTRDFQGVNTSSFDGHGNFNIGIKDQGV 196
           KIREGQPLGIAVTLRGK+MYSFLDR++NLG PRTRDFQGVN SSFDG+GN+NIGIKDQ V
Sbjct: 137 KIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGVNISSFDGNGNYNIGIKDQTV 196

Query: 197 FPEIRFDVVGKPRGMDVCIETTAETDKEAQRLLALLGMPFREGGGSSATALPKKKLKSHH 256
           FPE++   +G PRGMD+CI TTA+TD+E Q+LLAL+GMPFRE G      + KKKLKSHH
Sbjct: 197 FPELK-SGIGTPRGMDICISTTAKTDQEGQKLLALMGMPFRE-GVEVTQIVRKKKLKSHH 254

Query: 257 FDPKAKGK 264
           FDPK+KG+
Sbjct: 255 FDPKSKGR 262