Miyakogusa Predicted Gene

Lj2g3v1561960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1561960.1 tr|Q8LP14|Q8LP14_PEA Nine-cis-epoxycarotenoid
dioxygenase4 OS=Pisum sativum GN=nced4 PE=2
SV=1,82.9,0,RPE65,Carotenoid oxygenase; 9-CIS-EPOXYCAROTENOID
DIOXYGENASE,NULL; BETA-CAROTENE DIOXYGENASE,Carote,CUFF.37529.1
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g025270.1 | carotenoid cleavage dioxygenase 4a-6 | HC | ch...   480   e-136
Medtr5g025230.1 | carotenoid cleavage dioxygenase 4a-6 | HC | ch...   454   e-128
Medtr5g025250.1 | carotenoid cleavage dioxygenase 4a-6 | HC | ch...   446   e-125
Medtr2g070460.1 | 9-cis-epoxycarotenoid dioxygenase | HC | chr2:...   196   3e-50
Medtr8g037315.1 | carotenoid cleavage dioxygenase | HC | chr8:13...   190   1e-48
Medtr8g037275.1 | carotenoid 9,10(9',10')-cleavage dioxygenase |...   179   2e-45
Medtr8g037310.1 | carotenoid 9,10(9',10')-cleavage dioxygenase |...   179   2e-45
Medtr8g037290.1 | carotenoid 9,10(9',10')-cleavage dioxygenase |...   177   7e-45
Medtr3g110195.1 | retinal pigment epithelial membrane protein | ...   102   4e-22

>Medtr5g025270.1 | carotenoid cleavage dioxygenase 4a-6 | HC |
           chr5:10254367-10256492 | 20130731
          Length = 581

 Score =  480 bits (1235), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 225/270 (83%), Positives = 255/270 (94%), Gaps = 1/270 (0%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           MLHA+ IS G+ATLCSRYV+TYKYKIEN+AGY LIPNVFSGFN+L+ASAARGS+TAARVI
Sbjct: 157 MLHAITISNGKATLCSRYVQTYKYKIENEAGYQLIPNVFSGFNSLIASAARGSVTAARVI 216

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
           +GQYNP+NGIGLANTSLALFGNKL+ALGESDLPYEI +  NGDI+T+GR DF+GKL+MSM
Sbjct: 217 SGQYNPSNGIGLANTSLALFGNKLFALGESDLPYEINLTPNGDIQTIGRYDFNGKLSMSM 276

Query: 121 TAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKKY 180
           TAHPKID D+GE FAFRYGP+PPFLTYFRFD +G KH DVPVFSMTRPSFLHDFAITKKY
Sbjct: 277 TAHPKIDGDTGETFAFRYGPMPPFLTYFRFDANGVKHNDVPVFSMTRPSFLHDFAITKKY 336

Query: 181 AIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAIN 240
           A+FTDIQLGMNPLDMISGGSP+GSDP+KVSRIGILPRYA DES+MKWFDVPGFNI+HAIN
Sbjct: 337 AVFTDIQLGMNPLDMISGGSPVGSDPSKVSRIGILPRYASDESKMKWFDVPGFNIMHAIN 396

Query: 241 AWE-EEDGKTVTLVAPNILSVEHTMERLEL 269
           +W+ E+D +TVTL+APN+LS+EHTMERLEL
Sbjct: 397 SWDGEDDEETVTLIAPNVLSIEHTMERLEL 426


>Medtr5g025230.1 | carotenoid cleavage dioxygenase 4a-6 | HC |
           chr5:10231380-10229377 | 20130731
          Length = 578

 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 211/269 (78%), Positives = 239/269 (88%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           MLHA+ IS G+ATLCSRYVKTYKYKIEN AG+ LIPNVFSGFN+L+A AARGS+  ARV+
Sbjct: 155 MLHAITISNGKATLCSRYVKTYKYKIENKAGHQLIPNVFSGFNSLIALAARGSVVVARVL 214

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
            GQYNP+NGIGL NTSLALFGN+L+ALGESDLPYE+++  NGDI+T+GR DF+GKL MSM
Sbjct: 215 TGQYNPSNGIGLVNTSLALFGNRLFALGESDLPYEVKLTPNGDIQTMGRYDFNGKLLMSM 274

Query: 121 TAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKKY 180
           TAHPKID D+ ECFAFRYGP+ PFLTYFRFD +G KH DVPVFSM RPSFLHDFAITKKY
Sbjct: 275 TAHPKIDSDTSECFAFRYGPIRPFLTYFRFDSNGVKHNDVPVFSMKRPSFLHDFAITKKY 334

Query: 181 AIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAIN 240
           A+F DIQL MNPL MI GGSP+ SDP+KVSRIGILPRYA DES+MKWFDVPGFNI+H IN
Sbjct: 335 AVFADIQLEMNPLGMIFGGSPVRSDPSKVSRIGILPRYANDESKMKWFDVPGFNIMHTIN 394

Query: 241 AWEEEDGKTVTLVAPNILSVEHTMERLEL 269
           AW+EEDG TVTLVA NILSV+H MER++L
Sbjct: 395 AWDEEDGGTVTLVATNILSVQHVMERMDL 423


>Medtr5g025250.1 | carotenoid cleavage dioxygenase 4a-6 | HC |
           chr5:10240138-10238399 | 20130731
          Length = 579

 Score =  446 bits (1147), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 206/269 (76%), Positives = 239/269 (88%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           MLHA++I+ G+ATLCSRYV+TYKYKIEN+AGY ++PNVFSGFN+L+  AARGS+  ARV+
Sbjct: 156 MLHAVKITNGKATLCSRYVQTYKYKIENEAGYQILPNVFSGFNSLIGLAARGSVAVARVL 215

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
            GQYNP NGIGL NTSLALFGN+L+ALGESDLPYEI++  NGDI+T+GR DF+GKL M+M
Sbjct: 216 TGQYNPINGIGLINTSLALFGNRLFALGESDLPYEIKVTPNGDIQTIGRYDFNGKLFMNM 275

Query: 121 TAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKKY 180
           TAHPKID D+GECFA+RYG + PFLTYFRFD +G KH DVPVFSM RPSFLHDFAITKKY
Sbjct: 276 TAHPKIDSDTGECFAYRYGLIRPFLTYFRFDSNGVKHNDVPVFSMKRPSFLHDFAITKKY 335

Query: 181 AIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAIN 240
           A+F DIQL +NPLDMI GGSP+ SDP+KV RIGILPRYA +ES+MKWFDVPG NI+H IN
Sbjct: 336 ALFADIQLEINPLDMIFGGSPVRSDPSKVPRIGILPRYADNESKMKWFDVPGLNIMHLIN 395

Query: 241 AWEEEDGKTVTLVAPNILSVEHTMERLEL 269
           AW+EEDGKTVT+VAPNIL VEH MERLEL
Sbjct: 396 AWDEEDGKTVTIVAPNILCVEHMMERLEL 424


>Medtr2g070460.1 | 9-cis-epoxycarotenoid dioxygenase | HC |
           chr2:29673292-29670860 | 20130731
          Length = 610

 Score =  196 bits (497), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 144/254 (56%), Gaps = 3/254 (1%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           M+HA++ + G  +   R+ +T++   E   G P+ P      +   +  AR +L  AR +
Sbjct: 188 MVHAVKFTNGSVSYSCRFTETHRLAQEKALGRPVFPKAIGELHGH-SGIARLALYYARSL 246

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
            G  +  +G+G+AN  L  F N+L A+ E D+PY IR+  NGD+ T+ R DFD +L  +M
Sbjct: 247 CGLVDGTHGMGVANAGLVYFNNRLLAMSEDDIPYHIRVTPNGDLTTVCRYDFDNQLKSTM 306

Query: 121 TAHPKIDPDSGECFAFRYGPV-PPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKK 179
            AHPK+DP     +A  Y  V  P+L YFRFD  G K PDV +  + +P+ +HDFAIT+ 
Sbjct: 307 IAHPKVDPVDKNMYALSYDVVQKPYLKYFRFDASGVKSPDVEI-PLEQPTMMHDFAITEN 365

Query: 180 YAIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAI 239
           + +  D Q+     +MI GGSP+  D  KVSR G+L + A D SEM W D P     H  
Sbjct: 366 FVVVPDQQVVFKLGEMIRGGSPVVYDKEKVSRFGVLSKNAEDSSEMIWIDAPECFCFHLW 425

Query: 240 NAWEEEDGKTVTLV 253
           NAWEE +   V ++
Sbjct: 426 NAWEEPENDEVVVI 439


>Medtr8g037315.1 | carotenoid cleavage dioxygenase | HC |
           chr8:13903093-13896651 | 20130731
          Length = 540

 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 150/266 (56%), Gaps = 17/266 (6%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAG---YPLIPNVFSGFNTLVASAA--RGSLT 55
           M+H LRI  G+AT  SR+VKT + K E   G   +  I ++   F  L+ +    R  L 
Sbjct: 101 MIHGLRIKDGKATYVSRFVKTSRLKQEEYFGGSKFMKIGDMKGLFGLLMVNMQMLRAKLK 160

Query: 56  AARVIAGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGK 115
              V  G        G ANT+L     KL AL E D PY I++  +GD++TLG  D+D +
Sbjct: 161 VVDVSYGH-------GTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKR 213

Query: 116 LTMSMTAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFA 175
           L  + TAHPK+DP +GE F F Y   PP++TY     DG  H  VP+ +++ P  +HDFA
Sbjct: 214 LGHNFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGFMHDPVPI-TISEPIMMHDFA 272

Query: 176 ITKKYAIFTDIQLGMNPLDMISGGSPIGS-DPAKVSRIGILPRYARDESEMKWFDVPGFN 234
           IT+ Y+IF D+ L   P +M+   + I S D  K +R G+LPRYA+DE  ++WF++P   
Sbjct: 273 ITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDEKHIRWFELPNCF 332

Query: 235 IVHAINAWEEEDG---KTVTLVAPNI 257
           I H  NAWEEED     T  L  PN+
Sbjct: 333 IFHNANAWEEEDEIVLITCRLENPNL 358


>Medtr8g037275.1 | carotenoid 9,10(9',10')-cleavage dioxygenase | HC
           | chr8:13854442-13849769 | 20130731
          Length = 575

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/272 (37%), Positives = 149/272 (54%), Gaps = 10/272 (3%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAG---YPLIPNVFSGFNTLVASAARGSLTAA 57
           M+H LRI  G+AT  S +V+T + K E   G   +  I +V  G   L+    +      
Sbjct: 138 MIHGLRIKDGKATYVSHFVRTSRLKQEEYFGGCKFMKIGDV-KGLLGLLMVTIQTLREKL 196

Query: 58  RVIAGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLT 117
           +++   Y    G G ANT L     KL AL E D PY I++  +GD+ TLG  D++ +L 
Sbjct: 197 KILDVSY----GTGTANTGLVYHNGKLLALSERDKPYAIKVFEDGDLHTLGMLDYEKRLD 252

Query: 118 MSMTAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAIT 177
              TAHPK+DP +GE F F Y   PP++TY     DG  +  VP+ +++ P  +HDFAIT
Sbjct: 253 HYFTAHPKVDPFTGEMFTFGYSQTPPYITYRVISKDGYMYDPVPI-TISDPIMVHDFAIT 311

Query: 178 KKYAIFTDIQLGMNPLDMISGGSPIGS-DPAKVSRIGILPRYARDESEMKWFDVPGFNIV 236
           + YAIF D+ +   P +M+     I S D  K +R G+LPRYA+D+  ++WF++P   I 
Sbjct: 312 ENYAIFMDLPVYFRPKEMVKNNKLIFSFDSTKKARFGVLPRYAKDDKLIRWFELPNCFIF 371

Query: 237 HAINAWEEEDGKTVTLVAPNILSVEHTMERLE 268
           H  NAWEEED   +     N L ++   E ++
Sbjct: 372 HNANAWEEEDQVVLITCRLNNLDLDMVSEDVK 403


>Medtr8g037310.1 | carotenoid 9,10(9',10')-cleavage dioxygenase | HC
           | chr8:13895762-13890670 | 20130731
          Length = 575

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/267 (37%), Positives = 146/267 (54%), Gaps = 10/267 (3%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNV--FSGFNTLVASAARGSLTAAR 58
           M+H LRI  G+AT  SR+V+T + K E   G      V    G   ++    +      +
Sbjct: 138 MIHGLRIKDGKATYVSRFVRTSRLKQEEYFGGSKFMKVGDIKGLLGVLMVTIQILREKLK 197

Query: 59  VIAGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTM 118
           ++   Y    G G ANT L      L AL E D PY I++  +GD+ TLG  D+D +L  
Sbjct: 198 ILDVSY----GTGTANTGLVYHNAMLLALSERDKPYAIKVFEDGDLHTLGMLDYDKRLDH 253

Query: 119 SMTAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITK 178
             TAHPK+DP +G+ F F Y   PP++TY     DG  H  VP+ +++ P  +HDFAIT+
Sbjct: 254 YFTAHPKVDPFTGDMFTFGYSQTPPYITYRVISKDGYMHDPVPI-TISNPIMVHDFAITE 312

Query: 179 KYAIFTDIQLGMNPLDMISGGSPIGS-DPAKVSRIGILPRYARDESEMKWFDVPGFNIVH 237
            YAIF D+ +   P +M+     + S D  K +R G+LPRYA+D+  ++WF++P   I H
Sbjct: 313 NYAIFMDLPVYFRPKEMVKNKRLVFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCFIFH 372

Query: 238 AINAWEEEDGKTVTLVAPNILSVEHTM 264
             NAWEEED   V L+   + +++  M
Sbjct: 373 NANAWEEED--EVVLITCRLKNLDLDM 397


>Medtr8g037290.1 | carotenoid 9,10(9',10')-cleavage dioxygenase | HC
           | chr8:13873459-13869022 | 20130731
          Length = 575

 Score =  177 bits (450), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 141/250 (56%), Gaps = 10/250 (4%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAG---YPLIPNVFSGFNTLVASAARGSLTAA 57
           M+H LRI  G+AT  S +V+T + K E   G   +  I +V  G   L+    +      
Sbjct: 138 MIHGLRIKDGKATYVSHFVRTSRLKQEEYFGGCKFMKIGDV-KGLLGLLMVTIQTLREKL 196

Query: 58  RVIAGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLT 117
           +++   Y    G G ANT L     KL AL E D PY I++  +GD+ TLG  D+D +L 
Sbjct: 197 KILDVSY----GTGTANTGLVYHNGKLLALSERDKPYAIKVFEDGDLHTLGILDYDKRLD 252

Query: 118 MSMTAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAIT 177
              T+HPK+DP +GE F F Y   PP++TY     DG  +  VP+ +++ P  +HDFAIT
Sbjct: 253 HYFTSHPKLDPYTGEMFTFGYAQTPPYITYRVISKDGYMYDPVPI-TISDPIMVHDFAIT 311

Query: 178 KKYAIFTDIQLGMNPLDMISGGSPIGS-DPAKVSRIGILPRYARDESEMKWFDVPGFNIV 236
           + YAIF D+ +   P +M+     I S D  K +R G+LPRYA+D+  ++WF++P   I 
Sbjct: 312 ENYAIFMDLPVYFRPKEMVKNNKLIFSFDSTKKARFGVLPRYAKDDKLIRWFELPNCFIF 371

Query: 237 HAINAWEEED 246
           H  NAWEEED
Sbjct: 372 HNANAWEEED 381


>Medtr3g110195.1 | retinal pigment epithelial membrane protein | HC
           | chr3:51201204-51196407 | 20130731
          Length = 586

 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 17/255 (6%)

Query: 1   MLHAL---RISQGRATLC--SRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLT 55
           MLHAL   + + G  T+   +++V+T  YK+E     PL      G +  + SA   +  
Sbjct: 147 MLHALYFKKSNHGSWTVLYNNKHVETETYKLEKQRNKPLFLPAIEGNSLAILSAYLFNW- 205

Query: 56  AARVIAGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGK 115
              + +G+ N      ++NT++     K Y++ ES +P EI I +   ++TL   +    
Sbjct: 206 ---LRSGKVNKY----ISNTNVFEHSGKFYSVAESHMPQEIDIFS---LKTLNNWELSAA 255

Query: 116 LTMSMTAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFA 175
                T+HPK  P +GE       P+ PF        DGKK        + R S  HD  
Sbjct: 256 WNRPFTSHPKKAPITGELVTLGVEPIKPFAVVGIISADGKKLVHKVDIKLNRCSLCHDIG 315

Query: 176 ITKKYAIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNI 235
           +T++Y +  D  L ++   ++ GG  I  D  + +RIG++PRY    S +KWF+V     
Sbjct: 316 VTQRYNVIMDFPLTIDLNRLLRGGQLIKYDRKEYARIGVMPRYGNANS-IKWFEVEPNCT 374

Query: 236 VHAINAWEEEDGKTV 250
            H IN++E+ D   V
Sbjct: 375 FHIINSFEDGDEVVV 389