Miyakogusa Predicted Gene

Lj2g3v1560830.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1560830.2 Non Characterized Hit- tr|F4PQC8|F4PQC8_DICFS
Putative uncharacterized protein OS=Dictyostelium
fasc,31.13,8e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; N-terminal domain of CBF1 interacting co-,CUFF.37486.2
         (617 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g040410.1 | zinc knuckle (CCHC-type) family protein | LC |...   601   e-172
Medtr2g040240.1 | hypothetical protein | LC | chr2:17657190-1765...    53   9e-07

>Medtr2g040410.1 | zinc knuckle (CCHC-type) family protein | LC |
           chr2:17736264-17729542 | 20130731
          Length = 915

 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 335/599 (55%), Positives = 377/599 (62%), Gaps = 27/599 (4%)

Query: 1   MEGEEGGGIRLSKRFSDDNKGGAGSEVDYKTKSGTAWSHSYLNQKPWHPLSYPNQRRKWI 60
           MEGEEGGG+RLSKRF+DD  GG   EVDYKTKSGTAWSH++LNQKPWHPLSYPNQRRKWI
Sbjct: 1   MEGEEGGGVRLSKRFNDDKGGG---EVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWI 57

Query: 61  AEQTHANRERRTEEVAREYAQEQEFYRQTNLISKKDKEKVELMQAVSFMYVRPPGYNAES 120
           AEQTHA RERRTEEVAREYAQEQEFYR T+LISKKDKEKVELMQAVSFMYVRPPGYN ES
Sbjct: 58  AEQTHAQRERRTEEVAREYAQEQEFYRTTSLISKKDKEKVELMQAVSFMYVRPPGYNPES 117

Query: 121 AKAAEMNDQTKREEMT----SETNADAXXXXXXXXXRVNDEKKKRRPKDVFGRTLPTEEE 176
           AKAAE+ND+ K+E+      ++TN D            + EKKK RPKDVFGR LPTEEE
Sbjct: 118 AKAAELNDEKKKEDTVNNEPTQTNPDGPSSLPP-----HGEKKKPRPKDVFGRALPTEEE 172

Query: 177 FKVLKNAPKLETGVAGRAKPFGVEVRNVKCLRCGSYGHQSGDRECPLKDSIMPNEESRLK 236
           F+VLKNAP+ ETGVA RAKPFGVE+RNVKCLRCG+YGHQSGDRECPLKD+IMPNEE+RLK
Sbjct: 173 FEVLKNAPRHETGVAARAKPFGVEIRNVKCLRCGNYGHQSGDRECPLKDAIMPNEENRLK 232

Query: 237 RDDPLNAIIAHTDPTEPLKWELKQKPGISPPRGGFKPDDPNQQIVA-ADDIFDEYGGFLN 295
           RDDPLNAI+AHTD TEPLKWELKQKPGISPPRGGFKPDDPNQQIVA  +DIFDEYGGFLN
Sbjct: 233 RDDPLNAILAHTDLTEPLKWELKQKPGISPPRGGFKPDDPNQQIVAEEEDIFDEYGGFLN 292

Query: 296 MDSIPDLLTNFXXXXXXXXXXXXXXQQLVHSETEASSDDGEXXXXXXXXXXXXXXXXXXX 355
           M  IPDLLTN               Q+L+HSE EAS DDGE                   
Sbjct: 293 MGDIPDLLTNLSKKPKKSKNKKHKKQKLLHSEREASLDDGESRSKKKRVKESKKKRDYKE 352

Query: 356 XXXXXXXXXEKDHGKSRHKXXXXXXXXXXNVKDRSKRTKHKHSFSPKGSDQPXXXXXXXX 415
                    EK HGKSR+K          +  D S++TK + S S K  D P        
Sbjct: 353 SSSSGSFASEKVHGKSRNK---HSDDFDSDRNDPSRKTKPERSLSLKDYDHPRHGRSKHG 409

Query: 416 XXXXXXXXXXXXXXXXXXXYKNSDKHSFSPEXXXXXXXXXXXXXIXXXXXXXXXXXSYSD 475
                              YKN D+ S+S E             I            Y+ 
Sbjct: 410 KRRHSFSSEESGPDCYNGNYKNRDRRSYSSEDPDSDRDDRGRKNIQKHKRKHGRKRHYNS 469

Query: 476 D--DSGAAGYHVYHXXXXXXXXXXXXXXXXXXTNVKRXXXXXXXXAHCDSQEYSRKFSFD 533
           D  DSG A YH+                       K          HCDSQ +   FS D
Sbjct: 470 DEKDSGPADYHLKQKGRDEHSYKSDDCNHQRQPEDKISSHKYSSIIHCDSQRHHVSFSHD 529

Query: 534 RWHGDQKSRGGHSYSSENSDIDKDDQSRRIKQKHSTTSKGSEHTSKQSRKKHSYSSKDS 592
           R+ G QKSR  HS SS +SD++K+DQSRRIK+         E  S++ R++H YSS DS
Sbjct: 530 RYRGSQKSRSEHSCSSNDSDVEKNDQSRRIKE---------ERGSQKRREEHLYSSDDS 579



 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 536 HGDQKSRGGHSYSSENSDIDKDDQSRRIKQKHSTTSKGSEH----TSKQSRKKHSY 587
           H  QKSR   SYSS +SD++KD +SRRIK+KH  T  GSEH      +Q+R+K SY
Sbjct: 732 HRSQKSRAERSYSSVDSDVEKDGRSRRIKEKHCGTPDGSEHAEIDVRQQNREKPSY 787


>Medtr2g040240.1 | hypothetical protein | LC |
           chr2:17657190-17655056 | 20130731
          Length = 203

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 536 HGDQKSRGGHSYSSENSDIDKDDQSRRIKQKHSTTSKGSEH----TSKQSRKKHSYSSKD 591
           H  QK R  HSYSS++SD++KD +SRRIK+KH  T  GSEH      +Q+R+K SY   D
Sbjct: 19  HESQKRRAEHSYSSDDSDVEKDGRSRRIKEKHRGTPDGSEHAEIDVRQQNREKPSYHRSD 78

Query: 592 SGAD 595
             ++
Sbjct: 79  KSSN 82