Miyakogusa Predicted Gene

Lj2g3v1550000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1550000.1 Non Characterized Hit- tr|I1HMM9|I1HMM9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,32.3,1e-17,Myb_DNA-bind_4,NULL; coiled-coil,NULL;
MYB_LIKE,Myb-like domain; TRANSCRIPTION FACTOR,NULL; ZINC
FIN,CUFF.37405.1
         (307 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g026540.1 | trihelix transcription factor GT-3a-like prote...   364   e-101
Medtr4g015680.1 | trihelix transcription factor GT-3a-like prote...   147   1e-35
Medtr7g068770.1 | trihelix transcription factor GT-3a, putative ...   139   4e-33
Medtr3g085960.1 | trihelix transcription factor | HC | chr3:3888...    74   2e-13
Medtr1g098870.1 | myb/SANT-like DNA-binding domain protein | HC ...    67   2e-11
Medtr2g026725.1 | Myb/SANT-like DNA-binding domain protein | HC ...    66   4e-11
Medtr6g035370.1 | myb/SANT-like DNA-binding domain protein | HC ...    63   4e-10
Medtr1g098900.1 | trihelix transcription factor GT-like protein ...    62   5e-10
Medtr1g060990.1 | trihelix transcription factor | HC | chr1:2659...    54   3e-07
Medtr3g089020.1 | RNA-metabolising metallo-beta-lactamase | HC |...    50   3e-06
Medtr7g114860.1 | Myb/SANT-like DNA-binding domain protein | HC ...    49   6e-06
Medtr1g492790.1 | trihelix transcription factor | HC | chr1:4160...    49   7e-06

>Medtr5g026540.1 | trihelix transcription factor GT-3a-like protein
           | HC | chr5:10916605-10913848 | 20130731
          Length = 302

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/301 (66%), Positives = 219/301 (72%), Gaps = 10/301 (3%)

Query: 9   TLAARLGMVMPSMVNPSTSSMMSGEMSVAPVREERGPSQPQWTQQETREFIAIRAELERD 68
            LAARLG+V  S++ P TSS+MS     A +REER P+QPQW+QQETREFIAIRAELERD
Sbjct: 10  ALAARLGIVPQSLLIP-TSSLMSP----AAMREERVPAQPQWSQQETREFIAIRAELERD 64

Query: 69  FTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEE 128
           FTASKRNKTLWEVVSSKMRERG+RRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEE
Sbjct: 65  FTASKRNKTLWEVVSSKMRERGYRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEE 124

Query: 129 LHAVFTQRAQNMQRLLLESENRSAQTKKGMKRLXX--XXXXXXXXXXXXXXXXXXXXXPA 186
           LHAVFT+RA +MQRLLLESE RSAQTKKG+K++                         P 
Sbjct: 125 LHAVFTERAHSMQRLLLESETRSAQTKKGVKKIRSGDRSSDEFSEDDEEVEDDSEEERPV 184

Query: 187 RSNTRKRKASDKTAMEKSSKGNNPGNNTNSASIQEMLKEFFQHQLXXXXXXXXXXXXXAH 246
           RSNTRKRKA  K A EKSS+ NN  N+T   +IQEMLKEFFQHQL             AH
Sbjct: 185 RSNTRKRKAG-KIATEKSSRANNANNST--GNIQEMLKEFFQHQLKVEMQWREVMERRAH 241

Query: 247 ERQLFEQEWRQTMEKLERERLMVEQAWXXXXXXXXXXXXXXXXXXDALLTTLLNKLIHES 306
           E+QLFEQEWRQ+MEKLERERLM+EQ W                  DALLTTLLNKLIHES
Sbjct: 242 EKQLFEQEWRQSMEKLERERLMIEQEWREREEHRRLREENRAERRDALLTTLLNKLIHES 301

Query: 307 N 307
           N
Sbjct: 302 N 302


>Medtr4g015680.1 | trihelix transcription factor GT-3a-like protein
           | HC | chr4:4726525-4724373 | 20130731
          Length = 279

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 134/258 (51%), Gaps = 24/258 (9%)

Query: 48  PQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVN 107
           PQW+ QET EF+ IRAEL++ F  +KRNK LWEV+S+ M+E+G+ RS EQCKCKWKNLV 
Sbjct: 40  PQWSIQETNEFLLIRAELDQTFMETKRNKQLWEVISNHMKEKGYHRSAEQCKCKWKNLVT 99

Query: 108 RYKGKETSDPEHGK-QCPFFEELHAVFTQRAQNMQRLLLESENRSAQTKKGMKRLXXXXX 166
           RYKG ET + E  K Q PF+ EL  +FT R Q M  L  E+E+ S   KK    L     
Sbjct: 100 RYKGCETMETEVLKQQFPFYNELQTIFTARMQRM--LWTEAEDGS---KKKATHLSTDDD 154

Query: 167 XXXXXXXXXXXXXXXXXXPARSNTRKRKASDKTAMEKSSKGNNPGNNTNSA--SIQEMLK 224
                                SN +K+KA          K  N   ++ S   +++E+L 
Sbjct: 155 EDDGNEESEAVSQKG------SNRKKKKA----------KVENESGSSKSFFRNLKEILD 198

Query: 225 EFFQHQLXXXXXXXXXXXXXAHERQLFEQEWRQTMEKLERERLMVEQAWXXXXXXXXXXX 284
           EF + QL              +ER+L E EWRQ ME LE ER+++EQ W           
Sbjct: 199 EFMRQQLQIEAQWMEAFEARENERRLREMEWRQQMEMLENERILMEQRWREREEQRRIRE 258

Query: 285 XXXXXXXDALLTTLLNKL 302
                  DAL+T LLNKL
Sbjct: 259 EARAEKRDALITALLNKL 276


>Medtr7g068770.1 | trihelix transcription factor GT-3a, putative |
           HC | chr7:25258075-25259867 | 20130731
          Length = 293

 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 132/260 (50%), Gaps = 19/260 (7%)

Query: 48  PQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVN 107
           PQW+ QET+EF+ IR+EL++ F  +KRNK LWEV+S+ M+E+G+ RS EQCKCKWKNLV 
Sbjct: 51  PQWSIQETKEFLMIRSELDQTFMETKRNKQLWEVISNTMKEKGYHRSAEQCKCKWKNLVT 110

Query: 108 RYKGKETSDPEHGK-QCPFFEELHAVFTQRAQNMQRLLLESENRSAQTKKGMKRLXXXXX 166
           RYKG ET + E  + Q PF+ EL A+F+ R   MQR+L  +E      KKG+        
Sbjct: 111 RYKGCETMEVEAMRQQFPFYNELQAIFSAR---MQRMLW-AEAEGGSKKKGVH------- 159

Query: 167 XXXXXXXXXXXXXXXXXXPARSNTRKRKASDKTAMEKSSKGNNPGNNTNSASIQEMLKEF 226
                                    K     K    K   G    +N  S +++E+L+EF
Sbjct: 160 -------VSSEDEEELGNEESEGDHKGNIKKKKKKGKMIIGGGGNDNNGSNNLKEILEEF 212

Query: 227 FQHQLXXXXXXXXXXXXXAHERQLFEQEWRQTMEKLERERLMVEQAWXXXXXXXXXXXXX 286
            + Q+              +ER+L E EWRQ ME LE ER+M+EQ W             
Sbjct: 213 MRQQMQMEAQWMEAFEARENERRLKEMEWRQRMEALENERIMMEQRWREREEQRRIREEA 272

Query: 287 XXXXXDALLTTLLNKLIHES 306
                D L+T LL+KL  E 
Sbjct: 273 RAEKRDELITALLDKLTRED 292


>Medtr3g085960.1 | trihelix transcription factor | HC |
           chr3:38886257-38881057 | 20130731
          Length = 390

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W Q ETR  I +R E++  F  SK NK LWE +S+KMRE+GF RSP  C  KW+NL+  +
Sbjct: 77  WVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEF 136

Query: 110 KGKETSD 116
           K  +  D
Sbjct: 137 KKAKHHD 143


>Medtr1g098870.1 | myb/SANT-like DNA-binding domain protein | HC |
           chr1:44531156-44535019 | 20130731
          Length = 565

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 45  PSQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKN 104
           PS  +W + E    I IR  LE  +  +     LWE +S+ M+ +G+ R+ ++CK KW+N
Sbjct: 368 PSPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAAMKRQGYNRNAKRCKEKWEN 427

Query: 105 LVNRYKGKETSDP---EHGKQCPFFEELHAVFTQ--RAQNM 140
           +   YK  + S+    +  K CP+F EL A++ +  + QN+
Sbjct: 428 INKYYKKMKESNKQRRDDSKTCPYFNELEAIYKEKNKTQNL 468



 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W +QET   + IR++++  F  S     LWE VS K+ + G+ RS ++CK K++N+   +
Sbjct: 56  WPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLADLGYHRSSKKCKEKFENVYKYH 115

Query: 110 K-GKET-SDPEHGKQCPFFEELHAV 132
           K  KE  S    GK   FF++L A+
Sbjct: 116 KRTKEGRSGKSEGKTYRFFDQLQAL 140


>Medtr2g026725.1 | Myb/SANT-like DNA-binding domain protein | HC |
           chr2:9734426-9736828 | 20130731
          Length = 379

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 45  PSQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKN 104
           PS  +W   E +  IA+R  LE  F       ++WE ++  ++  G+ RS ++CK KW+N
Sbjct: 258 PSNNRWPDVEVQALIAVRTALEHKFGHMGSKGSIWEEIAGALQGMGYNRSAKKCKEKWEN 317

Query: 105 LVNRYK---GKETSDPEHGKQCPFFEELHAVF 133
           +   Y+   G     P + K CP+F+EL  ++
Sbjct: 318 INKYYRRTVGSGKKRPVNSKTCPYFDELDNLY 349


>Medtr6g035370.1 | myb/SANT-like DNA-binding domain protein | HC |
           chr6:12680552-12684213 | 20130731
          Length = 646

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 5/95 (5%)

Query: 46  SQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNL 105
           S  +W + E    I +R  L+  +  +     LWE +S  M++ G+ R+ ++CK KW+N 
Sbjct: 461 SSSRWPKTEVEALIKLRTTLDMKYQENGPKGPLWEEISGLMKKMGYNRNAKRCKEKWEN- 519

Query: 106 VNRY--KGKETSD--PEHGKQCPFFEELHAVFTQR 136
           +N+Y  K KE++   PE  K CP+F +L A++ Q+
Sbjct: 520 INKYFKKVKESNKKRPEDSKTCPYFHQLDALYRQK 554



 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 12/90 (13%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W +QET   + IR++++  F  +     LW+ VS KM + G++R+ ++CK K++N+   +
Sbjct: 56  WPRQETLALLKIRSDMDGAFKDASVKGPLWDEVSRKMADLGYQRNSKKCKEKFENVYKYH 115

Query: 110 K-------GKETSDPEHGKQCPFFEELHAV 132
           K       GK  SD   GK   FF++L A+
Sbjct: 116 KRTKEGRGGK--SD---GKTYRFFDQLQAL 140


>Medtr1g098900.1 | trihelix transcription factor GT-like protein |
           HC | chr1:44556038-44552430 | 20130731
          Length = 637

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 44  GPSQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWK 103
           G S  +W + E +  I +R  ++  +  +     LWE +S  M+  G+ R+ ++CK KW+
Sbjct: 449 GMSSSRWPKVEVQALINLRTSMDNKYQENGPKGPLWEEISLAMKNLGYNRNAKRCKEKWE 508

Query: 104 NLVNRY--KGKETSD--PEHGKQCPFFEELHAVFTQRAQ 138
           N +N+Y  K KE++   PE  K CP+F +L A++ ++ +
Sbjct: 509 N-INKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGK 546



 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W +QET   + IR++++  F  +     LW+ VS K+ E G+ RS ++CK K++N+   +
Sbjct: 58  WPRQETLALLRIRSDMDTVFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYH 117

Query: 110 KGKETSD----PEHGKQCPFFEELHAV 132
             K T D       GK   FF++L A+
Sbjct: 118 --KRTKDGRGGKSDGKTYRFFDQLEAL 142


>Medtr1g060990.1 | trihelix transcription factor | HC |
           chr1:26597350-26600596 | 20130731
          Length = 511

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 14/117 (11%)

Query: 24  PSTSSMMSGEMSVAPVREERGPSQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVS 83
           P T+  M G+ S             +W +QET   + IR+ L+  F  + +   LW+ VS
Sbjct: 117 PETTGYMGGDASTG-----------RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVS 165

Query: 84  SKM-RERGFRRSPEQCKCKWKNLVNRY-KGKETSDPEH-GKQCPFFEELHAVFTQRA 137
             M  E  ++RS ++C+ K++NL   Y K KE     H GK   FF +L A++ + +
Sbjct: 166 RIMSEEHAYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENS 222


>Medtr3g089020.1 | RNA-metabolising metallo-beta-lactamase | HC |
           chr3:33966677-33957369 | 20130731
          Length = 867

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%)

Query: 31  SGEMSVAPVREERGPSQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERG 90
           S EMS +     +   + +W  +E ++ I +R++L   F   K    LWE +S  +   G
Sbjct: 757 SEEMSDSEPESSKSEKKNKWKTEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADG 816

Query: 91  FRRSPEQCKCKWKNLVNRY 109
             RSP QCK  W +L  +Y
Sbjct: 817 ISRSPGQCKSLWTSLALKY 835


>Medtr7g114860.1 | Myb/SANT-like DNA-binding domain protein | HC |
           chr7:47421508-47423164 | 20130731
          Length = 483

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 31/137 (22%)

Query: 23  NPSTSSM---MSGEMSVAPVREERGPSQPQWTQQETREFIAIRAELERDFTASKRNKT-- 77
           NPS+S      S    V P   E+   + +W + E    I +++      T S  N++  
Sbjct: 352 NPSSSDTEYSNSTSTLVVPTIMEKLEDRRRWPRDEVLALINLKS------TTSVINRSNN 405

Query: 78  ----------LWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQ----- 122
                     LWE +S  M E G++RS ++CK KW+N +N+Y  K+T D    K+     
Sbjct: 406 NVEGNSNKGPLWERISEGMFELGYKRSAKRCKEKWEN-INKY-FKKTKDIVVNKKKRSMD 463

Query: 123 ---CPFFEELHAVFTQR 136
              CP+F +L +++ Q+
Sbjct: 464 SRTCPYFHQLSSLYNQQ 480


>Medtr1g492790.1 | trihelix transcription factor | HC |
           chr1:41606848-41604357 | 20130731
          Length = 501

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 49  QWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRER-GFRRSPEQCKCKWKNLVN 107
           +W +QET   + IR+ L+  F  + +   LW  +S  M E  G++RS ++CK K++NL  
Sbjct: 114 RWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYK 173

Query: 108 RYK----GKETSDPEHGKQCPFFEELHAV 132
            YK    GK +   + GK   FF +L A+
Sbjct: 174 YYKKTKEGKASR--QDGKHYRFFRQLEAI 200