Miyakogusa Predicted Gene

Lj2g3v1549750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549750.1 tr|Q9LVV0|Q9LVV0_ARATH Emb|CAB82814.1
OS=Arabidopsis thaliana GN=At5g53020 PE=4
SV=1,36.51,1e-18,coiled-coil,NULL; seg,NULL; TRANSCRIPTION FACTOR
X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SUBUNIT P38-RE,CUFF.37394.1
         (417 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g026680.1 | ribonuclease P protein subunit P38, related pr...   478   e-135
Medtr3g091650.1 | ribonuclease P protein subunit P38, related pr...    91   2e-18
Medtr3g091650.3 | ribonuclease P protein subunit P38, related pr...    91   2e-18

>Medtr5g026680.1 | ribonuclease P protein subunit P38, related
           protein | HC | chr5:11022068-11025942 | 20130731
          Length = 390

 Score =  478 bits (1229), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/403 (64%), Positives = 284/403 (70%), Gaps = 26/403 (6%)

Query: 16  LLRSYIGLSFSVFLALLPTNLRTKARDLTRAEEELSQMRSRRREDSKANARVAEIFASHR 75
           L  SYIGLSFSVFLALLPTNLR  ++   RAEEEL Q++SRR+ED KANARVAEIFASHR
Sbjct: 13  LFSSYIGLSFSVFLALLPTNLREHSQRTIRAEEELRQLKSRRQEDYKANARVAEIFASHR 72

Query: 76  NAWRDEEKRLLRRIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMIEFMSRRIHEE- 134
           N+WRDEEKRLLRRID                              DEMI F+SRR  EE 
Sbjct: 73  NSWRDEEKRLLRRIDAASEEIVRLRAVVEDSKARVEDLEREVVERDEMIGFISRRFQEEE 132

Query: 135 GLGGCQSRDHYGGKKNQEWFHNXXXXXXVGTTRNVEEEGVEVIYEHKXXXXXXXXXXLVD 194
           GLGGC SR+   G   +E                     V+VIY+ +             
Sbjct: 133 GLGGCGSREDMVGNTAEE---------------------VDVIYQQQQQQQQHNQHL--- 168

Query: 195 NNGFDAEFMASASKFWAEKASLWQDVQHESLESMYSAKQFVARRESPWKVDGDSAGVSSX 254
            NGFD+EF +  SKFWAEKASLWQDVQ+ESLESMY+ KQFVARRESPWKVDGDSAGVSS 
Sbjct: 169 PNGFDSEF-SGGSKFWAEKASLWQDVQYESLESMYNTKQFVARRESPWKVDGDSAGVSSK 227

Query: 255 XXXXXXXXXXXXXFAKSDLSKVAPLIKKQAKRYQALSEKIDDLCRRIASDPSEPSLSSEF 314
                          K   SKV+  IKKQAKRYQ+LSEKID+LCRRIASDP EPSLSSEF
Sbjct: 228 LKLLEQELLNLDKIGKDVPSKVSSSIKKQAKRYQSLSEKIDELCRRIASDPCEPSLSSEF 287

Query: 315 RTQTQTEFLLEAFRLQQGASETGQKLMALQTEIGKSLYRDELKSEATPTTRRSLDSIRNN 374
           RTQTQTEFLLEAFRLQQ ASET QKLMAL TE+GKS Y+DEL+ E T TTRRS+DSIRNN
Sbjct: 288 RTQTQTEFLLEAFRLQQDASETAQKLMALHTEVGKSHYKDELRGEITLTTRRSMDSIRNN 347

Query: 375 FKDLQRNLEIWLARIIGDLEGILARDGASRVREYYISRYPFVQ 417
           F++LQRNLEIWLARIIGDLEGILARDGASRVREYYISRYPFVQ
Sbjct: 348 FRELQRNLEIWLARIIGDLEGILARDGASRVREYYISRYPFVQ 390


>Medtr3g091650.1 | ribonuclease P protein subunit P38, related
           protein, putative | HC | chr3:41722463-41726321 |
           20130731
          Length = 797

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 8/136 (5%)

Query: 279 LIKKQAKRYQALSEKIDDLCRRI------ASDPSEPSLSSEFRTQTQTEFLLEAFRLQQG 332
           L+ KQ  RYQ+L EK DDLC+R+      A+     +   + +T T   FL E F+LQ+ 
Sbjct: 661 LLNKQIGRYQSLQEKTDDLCKRMQENVLYANRGELNNARKKEKTSTLEHFLEETFQLQRY 720

Query: 333 ASETGQKLMALQTEI--GKSLYRDELKSEATPTTRRSLDSIRNNFKDLQRNLEIWLARII 390
              TGQKL  +Q++I  G     +E++  A    +R  DSIRN F ++QR LE+  ARII
Sbjct: 721 IVATGQKLFEIQSKIVSGFVGVAEEMEKSAGIDMKRFSDSIRNLFHEVQRGLEVRTARII 780

Query: 391 GDLEGILARDGASRVR 406
           GDLEG LAR+G   +R
Sbjct: 781 GDLEGTLAREGMICLR 796


>Medtr3g091650.3 | ribonuclease P protein subunit P38, related
           protein, putative | HC | chr3:41722369-41726321 |
           20130731
          Length = 797

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 8/136 (5%)

Query: 279 LIKKQAKRYQALSEKIDDLCRRI------ASDPSEPSLSSEFRTQTQTEFLLEAFRLQQG 332
           L+ KQ  RYQ+L EK DDLC+R+      A+     +   + +T T   FL E F+LQ+ 
Sbjct: 661 LLNKQIGRYQSLQEKTDDLCKRMQENVLYANRGELNNARKKEKTSTLEHFLEETFQLQRY 720

Query: 333 ASETGQKLMALQTEI--GKSLYRDELKSEATPTTRRSLDSIRNNFKDLQRNLEIWLARII 390
              TGQKL  +Q++I  G     +E++  A    +R  DSIRN F ++QR LE+  ARII
Sbjct: 721 IVATGQKLFEIQSKIVSGFVGVAEEMEKSAGIDMKRFSDSIRNLFHEVQRGLEVRTARII 780

Query: 391 GDLEGILARDGASRVR 406
           GDLEG LAR+G   +R
Sbjct: 781 GDLEGTLAREGMICLR 796