Miyakogusa Predicted Gene

Lj2g3v1549640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549640.1 Non Characterized Hit- tr|I3RZV1|I3RZV1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.21,0,seg,NULL;
RNA_POL_K_14KD,DNA-directed RNA polymerase, 14-18kDa subunit,
conserved site; DNA-DIRECTED,CUFF.37392.1
         (127 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g092450.1 | DNA-directed RNA polymerase I, II | HC | chr7:...   153   3e-38
Medtr0019s0160.1 | DNA-directed RNA polymerase I, II | HC | scaf...   146   5e-36

>Medtr7g092450.1 | DNA-directed RNA polymerase I, II | HC |
           chr7:36632357-36635472 | 20130731
          Length = 145

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 87/128 (67%), Gaps = 1/128 (0%)

Query: 1   MADEDYDDVDMGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXAQPVQRPR 59
           MAD+DY+D+DMGY                                       A PV+RPR
Sbjct: 1   MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDNKNDDLDAEGEPIETEEKEDAAPVERPR 60

Query: 60  KTSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLP 119
           +TSKYMTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELRERKIPFTIRRYLP
Sbjct: 61  RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 120

Query: 120 DGSYEDWG 127
           DGSYEDWG
Sbjct: 121 DGSYEDWG 128


>Medtr0019s0160.1 | DNA-directed RNA polymerase I, II | HC |
           scaffold0019:103555-106633 | 20130731
          Length = 144

 Score =  146 bits (368), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 86/127 (67%)

Query: 1   MADEDYDDVDMGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPVQRPRK 60
           MAD+DY+D+D+GY                                       +P +RPRK
Sbjct: 1   MADDDYNDLDIGYEDEPPEPGIEEGAEVDADDNDNNDEMAGEPIETEEKEQEEPTERPRK 60

Query: 61  TSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKYMTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELRE+KIPFTIRRYLPD
Sbjct: 61  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELREKKIPFTIRRYLPD 120

Query: 121 GSYEDWG 127
           GSYEDWG
Sbjct: 121 GSYEDWG 127