Miyakogusa Predicted Gene

Lj2g3v1549590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549590.1 tr|D7MPV6|D7MPV6_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_683248
PE,36.59,0.000000000002,seg,NULL,CUFF.37382.1
         (301 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g026860.1 | transmembrane protein, putative | HC | chr5:11...   402   e-112

>Medtr5g026860.1 | transmembrane protein, putative | HC |
           chr5:11105722-11098748 | 20130731
          Length = 307

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/303 (67%), Positives = 230/303 (75%), Gaps = 6/303 (1%)

Query: 1   MDS-SDSHEHEIPR--KHGVVLA--ILRWGLAIXXXXXXXXXXXXXXXXXXXXXXXXSVT 55
           MDS S S++ + PR  ++G V+A  ILRW +AI                        SV 
Sbjct: 1   MDSPSQSNQQDPPRPQRNGGVMAFVILRWIIAILLPFVFLFSIPFLLGLLLLAISDFSVP 60

Query: 56  GAISLPSQCKIVSTGVDIRSSKVCELGLLNYKAKDVFHHFERSKFRCRYDYYWASVFKVE 115
             +SL S CKIVSTGVDIRSSK+CELGLLNYKAKDVF HFE SKFRCRYDYYWASVFKVE
Sbjct: 61  NPVSLQSHCKIVSTGVDIRSSKICELGLLNYKAKDVFRHFESSKFRCRYDYYWASVFKVE 120

Query: 116 YVDRFSGQTQVAFAEAPKEALPPYCRPNFGAAWLTQYKYKVNETYDCWYTSGISKVHLYQ 175
           Y D FSGQ QVAFAEAP EALP YCRPNFGAAWLTQYK+KVNETYDCWYTSGISKVHLYQ
Sbjct: 121 YKDHFSGQRQVAFAEAPSEALPLYCRPNFGAAWLTQYKFKVNETYDCWYTSGISKVHLYQ 180

Query: 176 DNLFGCHADEQSTIEKIKQKAIMAMEMVNSWFSDK-RRTNNWRWGAIAGLVTGFSTSLIS 234
           DNLFGC ADEQS I+KI Q +  AME +N WFSDK RR N WRW  I G+++GFSTSLI+
Sbjct: 181 DNLFGCRADEQSIIQKIIQYSTQAMETINYWFSDKGRRANFWRWEIILGVISGFSTSLIT 240

Query: 235 ITFIGFLQQLLSSVYQSFKTWVFPRRVNAVLIRRACFLLAYLSFVAWLAIEYGKRLGLMD 294
           ITFI FL+Q LSS+++ F  W+   RVNA+L++R CFL+AY SFVAWL I YGKRLGL D
Sbjct: 241 ITFIMFLKQFLSSLHRPFAAWILFWRVNAILMKRTCFLIAYSSFVAWLVIVYGKRLGLAD 300

Query: 295 IFR 297
           IFR
Sbjct: 301 IFR 303