Miyakogusa Predicted Gene
- Lj2g3v1548470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1548470.1 tr|A9TFZ6|A9TFZ6_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,45.22,2e-18,no description,Nucleic acid-binding, OB-fold;
seg,NULL; Rep-A_N,Replication factor-A protein 1, N-te,CUFF.37375.1
(362 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g026880.1 | replication factor-A protein 1, amine-terminal... 136 3e-32
Medtr2g041270.1 | replication protein A 70 kDa protein | HC | ch... 84 2e-16
Medtr5g048670.1 | replication factor-A protein 1, amine-terminal... 57 3e-08
Medtr4g109580.2 | replication protein A 70 kDa protein | HC | ch... 54 3e-07
Medtr4g109580.1 | replication protein A 70 kDa protein | HC | ch... 54 3e-07
Medtr3g047950.1 | replication factor A1 | HC | chr3:15999174-160... 53 5e-07
>Medtr5g026880.1 | replication factor-A protein 1, amine-terminal
domain protein | HC | chr5:11111702-11112243 | 20130731
Length = 135
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 90/132 (68%), Gaps = 14/132 (10%)
Query: 1 MAVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGM 60
MAVNLT+GAI+ MC TS+ +PVLQ+ D+K VQ+QQNN T+ YR+V+SDG YQQGM
Sbjct: 1 MAVNLTQGAIITMC---FTSEVWEPVLQVFDMKLVQSQQNNTTEPYRLVLSDGLYYQQGM 57
Query: 61 LATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKPAPRN 120
L Q+N LV SG+LQKGSIV+L+ F C+ V MDKCDLIG+P AP+
Sbjct: 58 LVVQKNHLVHSGRLQKGSIVKLSHFYCDDV----------KYVIMDKCDLIGKPVLAPKE 107
Query: 121 GARAQSATGQSG 132
A +QSA +G
Sbjct: 108 -APSQSAVSHAG 118
>Medtr2g041270.1 | replication protein A 70 kDa protein | HC |
chr2:18105202-18100698 | 20130731
Length = 627
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 270 MYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
+Y RG + +NEAP R+IPIAALNPYQ W IKARVTAKG+LR Y+NARG+G
Sbjct: 165 LYKGRGAVMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 216
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 1 MAVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGM 60
MAVNLT AI A+ V + +P+LQ++D+ + + +N+ +RYR+++SD M
Sbjct: 1 MAVNLTANAITAIIAGDVDA---KPLLQVLDIATIVSTKNSQQQRYRLLLSDAVSSHHAM 57
Query: 61 LATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKPAPRN 120
LA Q N+ V++G++++GSIV+L + C + +R + C++IG PK +
Sbjct: 58 LAAQLNDRVNTGRVKQGSIVQLLDYICTPLQNRKIIMVLNMETIIPDCEIIGNPKSFVDS 117
Query: 121 GARAQSATGQSGVTSGNSQPFNNSA--NAG 148
Q A + V +G+S+ NN A NAG
Sbjct: 118 ELPVQKALPDNTV-AGSSRSINNLAAQNAG 146
>Medtr5g048670.1 | replication factor-A protein 1, amine-terminal
domain protein | LC | chr5:21289896-21286770 | 20130731
Length = 364
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 1 MAVNLTEGAIMAMCTDGV----TSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLY 56
M + L +GAI +C+D ++ PVLQ V +N++ V +SDG +
Sbjct: 3 MNLTLVKGAIARLCSDEFYCNDNKERFTPVLQ------VHKLENDS-----VWLSDGIHF 51
Query: 57 QQGMLATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKP 116
G+L EL GKL+ GS+VRLT F N V + +C++IG P
Sbjct: 52 HAGLLRANLLELCSVGKLKTGSVVRLTNFEVN-VFKTTKLILIYDFDVICQCEVIGNPIL 110
Query: 117 APRNGARAQSATGQSGVTSGNSQPFNNSANAGGVTARTSPVGPSLDHPKV 166
P N A S GQ + N GV R +G + P++
Sbjct: 111 LPEN---ALSDCGQQ-----------RTVNLTGVIERLFRMGDFVSRPEL 146
>Medtr4g109580.2 | replication protein A 70 kDa protein | HC |
chr4:45544168-45547694 | 20130731
Length = 560
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 285 RIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
R+ P+ +LNPY WTIK VT+KG +R Y NARGEG
Sbjct: 170 RVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEG 206
>Medtr4g109580.1 | replication protein A 70 kDa protein | HC |
chr4:45544168-45547694 | 20130731
Length = 618
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 285 RIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
R+ P+ +LNPY WTIK VT+KG +R Y NARGEG
Sbjct: 170 RVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEG 206
>Medtr3g047950.1 | replication factor A1 | HC |
chr3:15999174-16004293 | 20130731
Length = 824
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 1 MAVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGM 60
M++ LTE AI A+ + V + +P++Q+I + + ++ ++Y + +SDG
Sbjct: 1 MSIKLTENAIPAITSGDVDA---KPLVQVISITLLVDSDDSLLRKYYLKLSDGVYSHSAT 57
Query: 61 LATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPK 115
+A Q N+ V +G++++GSIV+L + C + R + +IG PK
Sbjct: 58 IAAQLNDGVGTGRVKEGSIVKLLDYVCPTIVIRKIIIVHKMETIVLDSQIIGNPK 112
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Query: 276 PIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARG 319
P+ NE P IPIAAL+PY+ W IKARVT+KG LR Y++ G
Sbjct: 120 PMVENEEP---IPIAALHPYKGKWAIKARVTSKGHLRHYNSPEG 160