Miyakogusa Predicted Gene

Lj2g3v1510860.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1510860.2 Non Characterized Hit- tr|I3T658|I3T658_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.36,0,no
description,ESCRT-II complex, Vps25 subunit, N-terminal winged helix;
no description,ESCRT-II com,CUFF.37324.2
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g028000.1 | E2F/DP family winged-helix DNA-binding domain ...   311   1e-85

>Medtr5g028000.1 | E2F/DP family winged-helix DNA-binding domain
           protein | HC | chr5:11699272-11703578 | 20130731
          Length = 179

 Score =  311 bits (798), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/157 (94%), Positives = 154/157 (98%)

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKTQKLFVIGLEEEFPLF 60
           MQKLG+FKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKTQKLFVI LEEEFPLF
Sbjct: 1   MQKLGEFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKTQKLFVIALEEEFPLF 60

Query: 61  TNPVIERSLTHEAREAFVSALVSEGRAEWMDKGHRKCLVLWHRIQDWAEILLQFAKDNGL 120
           TN VIERSLT+EAREAF+SALVSEGRAEWMDKGHRKCL+LWHRIQDWA+ILLQFAKDNGL
Sbjct: 61  TNTVIERSLTNEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILLQFAKDNGL 120

Query: 121 EDSVVTIEEIRFGTESQGTELHGIDRTILNRALKLLE 157
           ED VVTIEEIRFGTESQGTELHGIDRTILNRALKLLE
Sbjct: 121 EDGVVTIEEIRFGTESQGTELHGIDRTILNRALKLLE 157