Miyakogusa Predicted Gene

Lj2g3v1510680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1510680.1 tr|F4X4V2|F4X4V2_ACREC Protein IWS1-like protein
OS=Acromyrmex echinatior GN=G5I_13374 PE=4 SV=1,41.09,2e-19,seg,NULL;
TFIIS_N,Transcription factor IIS, N-terminal; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,N,CUFF.37829.1
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g028030.1 | transcription elongation factor (TFIIS) family...   265   2e-71

>Medtr5g028030.1 | transcription elongation factor (TFIIS) family
           protein | HC | chr5:11713865-11718779 | 20130731
          Length = 496

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/211 (68%), Positives = 154/211 (72%), Gaps = 4/211 (1%)

Query: 1   MWDTIAGGDSEDDQEGVRNLDDDNFIDDTGVEPGFYGNYNEPSSXXXXXXXXXXXXXXXI 60
           MWD +AG +SEDD EG RN+DDDNFIDDTGVEP  YG Y+EP S               I
Sbjct: 151 MWDALAG-NSEDDNEGARNMDDDNFIDDTGVEPALYG-YDEPRSPGDAPQAEEGEEDDEI 208

Query: 61  NDLFKMGKKK--NERSPXXXXXXXXXXXXXXXXXXXXXXXXNRQGKPAINKLKKLPLLTE 118
            DLFKMGKKK  NERSP                        NRQ KPA+NKLKKLPLL E
Sbjct: 209 KDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQHKPAVNKLKKLPLLIE 268

Query: 119 VLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQIDRREQ 178
           VLSKKQLQLEFLDHGVL LLK+WLEPLPDGSLPNINIRTAILKILND PIDLE  DRREQ
Sbjct: 269 VLSKKQLQLEFLDHGVLNLLKSWLEPLPDGSLPNINIRTAILKILNDLPIDLEHYDRREQ 328

Query: 179 LKRSGLGKVIMFLSKSDEEINVNRKLTKELV 209
           LKRSGLGKVIMFLS+SDEEINVNR+L K+LV
Sbjct: 329 LKRSGLGKVIMFLSRSDEEINVNRRLAKDLV 359