Miyakogusa Predicted Gene

Lj2g3v1510670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1510670.1 Non Characterized Hit- tr|I1L519|I1L519_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.6221
PE=,94.12,0.000000002, ,CUFF.37828.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g028030.1 | transcription elongation factor (TFIIS) family...   261   2e-70

>Medtr5g028030.1 | transcription elongation factor (TFIIS) family
           protein | HC | chr5:11713865-11718779 | 20130731
          Length = 496

 Score =  261 bits (666), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/158 (79%), Positives = 137/158 (86%)

Query: 1   MFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNIEDERAPFRRPSVKKPANKA 60
           MFLS+SDEEINVNR+LAK+LVDKWSRPIFNKSTRFEDMRN ED+R P+RRPSVKKPA KA
Sbjct: 339 MFLSRSDEEINVNRRLAKDLVDKWSRPIFNKSTRFEDMRNTEDDRVPYRRPSVKKPAAKA 398

Query: 61  PGMQSRDSDLDLDLXXXXXXXXXXXXHASRPEATPMDFVIRPQSKVDPEEVRARAKQASH 120
            GMQSRD DLDLDL            HASRPEATP+DFVIRPQSK+DP+E+RARAKQA+ 
Sbjct: 399 AGMQSRDGDLDLDLSQPRSGESSSRQHASRPEATPLDFVIRPQSKIDPDEIRARAKQATQ 458

Query: 121 DQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 158
           DQ RMKMNKKLQQLRAPKK+QLQATKLSVEGRGM KY 
Sbjct: 459 DQHRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMAKYF 496