Miyakogusa Predicted Gene

Lj2g3v1497160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1497160.1 tr|B9GZI1|B9GZI1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_757200 PE=4
SV=1,75,8e-19,seg,NULL,CUFF.37272.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g029660.1 | hypothetical protein | HC | chr5:12466681-1246...   132   1e-31
Medtr5g029660.2 | hypothetical protein | HC | chr5:12466663-1246...   130   4e-31

>Medtr5g029660.1 | hypothetical protein | HC |
           chr5:12466681-12469820 | 20130731
          Length = 110

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 69/80 (86%), Gaps = 1/80 (1%)

Query: 30  DDLHFPFDPISTQERKDEVMLVLKSDIMAALDKEVKSLDEDNWKFEGPRSRINLTSRRGG 89
           DD HFP+D IST+ERKDE MLVLKSD+MAALDKEVKSLDEDNWKFEGPRSRI+L SRRGG
Sbjct: 32  DDFHFPYDHISTEERKDEAMLVLKSDLMAALDKEVKSLDEDNWKFEGPRSRIHLVSRRGG 91

Query: 90  GGPLPWQTEISKNWNLPPPK 109
           G  L   TEISKNWN  PPK
Sbjct: 92  GH-LHRPTEISKNWNFTPPK 110


>Medtr5g029660.2 | hypothetical protein | HC |
           chr5:12466663-12469823 | 20130731
          Length = 109

 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 68/80 (85%), Gaps = 2/80 (2%)

Query: 30  DDLHFPFDPISTQERKDEVMLVLKSDIMAALDKEVKSLDEDNWKFEGPRSRINLTSRRGG 89
           DD HFP+D IST+ERKDE MLVLKSD+MAALDKEVKSLDEDNWKFEGPRSRI+L SRRGG
Sbjct: 32  DDFHFPYDHISTEERKDEAMLVLKSDLMAALDKEVKSLDEDNWKFEGPRSRIHLVSRRGG 91

Query: 90  GGPLPWQTEISKNWNLPPPK 109
               P  TEISKNWN  PPK
Sbjct: 92  HLHRP--TEISKNWNFTPPK 109