Miyakogusa Predicted Gene
- Lj2g3v1496120.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1496120.1 Non Characterized Hit- tr|B8ATJ8|B8ATJ8_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,63.41,0.000000003,In Between Ring fingers,Zinc finger,
C6HC-type; RING/U-box,NULL; IBR,Zinc finger, C6HC-type;
SUBFAMI,CUFF.37273.1
(256 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g029700.1 | NDR1/HIN1-like protein | HC | chr5:12495540-12... 452 e-127
Medtr3g462590.1 | zinc finger, C3HC4 type (RING finger) protein ... 57 1e-08
Medtr4g063815.1 | C6HC-type zinc finger RING/U-box protein | HC ... 57 1e-08
Medtr3g462570.1 | IBR domain protein | LC | chr3:25014064-250187... 55 7e-08
Medtr3g463310.2 | C6HC-type zinc finger RING/U-box protein | HC ... 54 2e-07
Medtr3g463310.1 | C6HC-type zinc finger RING/U-box protein | HC ... 54 2e-07
Medtr2g044290.1 | C6HC-type zinc finger RING/U-box protein | LC ... 53 3e-07
Medtr3g462530.1 | IBR domain protein | LC | chr3:24990527-249919... 53 3e-07
Medtr2g044250.1 | zinc finger protein | LC | chr2:19254401-19255... 53 4e-07
Medtr8g022900.1 | C6HC-type zinc finger RING/U-box protein | LC ... 50 2e-06
Medtr3g463280.1 | E3 ubiquitin-protein ligase RNF144A-like prote... 50 2e-06
Medtr2g044440.1 | zinc finger, C3HC4 type (RING finger) protein ... 50 3e-06
Medtr2g044420.1 | C6HC-type zinc finger RING/U-box protein | LC ... 49 3e-06
Medtr1g105450.1 | C6HC-type zinc finger RING/U-box protein | HC ... 49 5e-06
>Medtr5g029700.1 | NDR1/HIN1-like protein | HC |
chr5:12495540-12488193 | 20130731
Length = 630
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/257 (80%), Positives = 229/257 (89%), Gaps = 1/257 (0%)
Query: 1 MIPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCPRCETPCIEDEDHHAQCPQCFFS 60
MIPPGLLKH L DE+YERWESMMLEKTLASMSDV +CPRCETPCIE+ED HAQCP+CFFS
Sbjct: 374 MIPPGLLKHFLGDEEYERWESMMLEKTLASMSDVAYCPRCETPCIEEEDQHAQCPKCFFS 433
Query: 61 FCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSK 120
FCTLCRERRHVGIACMTLEMK+Q+L+DRQN S LKG+QK+ EL INEMLS+K IHRDSK
Sbjct: 434 FCTLCRERRHVGIACMTLEMKLQLLQDRQNSSHLKGNQKQIELAKINEMLSIKAIHRDSK 493
Query: 121 LCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDETDPYGHFRD-GSCELFPREMIDA 179
LCP CDMAISRT GCNKMKCGNCG+YFCY CNKA+D +DPYGHFR+ GSCELFP+EM+D
Sbjct: 494 LCPYCDMAISRTGGCNKMKCGNCGKYFCYLCNKALDPSDPYGHFREGGSCELFPQEMVDN 553
Query: 180 WQENLNARQLVGQVQAELFPQRGTACPSCRQFNAKIGNNNHMFCWACQSHYCYLCNEVVR 239
WQ +N RQ V Q+ AELF G+ACPSCRQFN KIGNNNHM CWACQSHYCYLCN+ VR
Sbjct: 554 WQPRINPRQEVQQIHAELFHLGGSACPSCRQFNVKIGNNNHMLCWACQSHYCYLCNKTVR 613
Query: 240 RGTKHYGPKGCKQHSEG 256
RGTKHYGPKGCKQH+EG
Sbjct: 614 RGTKHYGPKGCKQHTEG 630
>Medtr3g462590.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr3:25026751-25027788 | 20130731
Length = 300
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 23/155 (14%)
Query: 2 IPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDHHA---QCPQ 56
+ P ++ ++ + WES + E ++A M + +CP C + DE +CP
Sbjct: 150 LKPEHVESIIPKQVIVEWESAIYESSIAMMQKM-YCPYENCSLLLVNDEVEVVTSCECPS 208
Query: 57 CFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIH 116
C FC C+ H + C + Q KD Q+ QL+ RK LE+ N
Sbjct: 209 CHRLFCAQCKVPWHTNMNCQ----EFQEWKDNQDEEQLE----RKFLELANS-------- 252
Query: 117 RDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRC 151
+ CP C M + R GC M+C CG FCY C
Sbjct: 253 EKWQRCPKCSMHVQRNGGCEHMRC-RCGCNFCYNC 286
>Medtr4g063815.1 | C6HC-type zinc finger RING/U-box protein | HC |
chr4:23696461-23697413 | 20130731
Length = 258
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 1 MIPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDHH---AQCP 55
++ P L+ + +ERW + E + S ++CP C + DE+ ++CP
Sbjct: 107 ILEPHNCSTLIPKDVFERWGKALCENMVLD-SQKLYCPFNDCSAMLVNDEEEVVTVSECP 165
Query: 56 QCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEI 115
C FC C+ H G+ C + Q L+D G++ RK+L M E+ K
Sbjct: 166 HCNRLFCAQCKVSWHSGVDCR----EFQSLED--------GERGRKDL-MAMELAKNKRW 212
Query: 116 HRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDETDPY 161
R CP C + + EGC ++ C CG FCY C + Y
Sbjct: 213 KR----CPKCSFYVEKIEGCTRISC-RCGNQFCYGCGSTWNTDSHY 253
>Medtr3g462570.1 | IBR domain protein | LC | chr3:25014064-25018785
| 20130731
Length = 576
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 24/161 (14%)
Query: 2 IPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDHHA----QCP 55
+ P L+ +L + WES E ++A + + +CP C + DE A +CP
Sbjct: 99 LKPEHLQCILPKKIIVDWESANCEASIA-LKEKFYCPYKNCSLLLVNDEAGRAITSCECP 157
Query: 56 QCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEI 115
C FC C+ H + C E + + Q RK LE+
Sbjct: 158 YCHRLFCAQCKVPWHGNMNCQEFE--------KSEIGQGLKQSDRKFLELAKR------- 202
Query: 116 HRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAID 156
K CP C M + RT GC M+C CG +FCY C + D
Sbjct: 203 -EKWKRCPKCSMHVQRTTGCEHMRC-RCGCHFCYICGRDWD 241
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 32/176 (18%)
Query: 19 WESMMLEKTLASMSDVVHCP--RCETPCIEDEDHHA---QCPQCFFSFCTLCRERRHVGI 73
WES + E ++ + ++CP C + D +CP C FC C H
Sbjct: 414 WESAIYESSIV-LRQKIYCPYKNCSLLLVNDGLEGVTSCECPSCHRLFCAQCEVPWHADK 472
Query: 74 ACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKLCPSCDMAISRTE 133
C + ++L ++Q D+K +L EM CP C + + +T
Sbjct: 473 KCRQFQKSKKVLGEKQ------LDKKLAQLAK-TEMWQK---------CPRCSIHVEKTL 516
Query: 134 GCNKMKCGNCGQYFCYRCNKAIDETDPYGHFRDGSCELFPREMIDAWQENLNARQL 189
GC+ MKC CG YFCY C K E HF + +E + + N N R L
Sbjct: 517 GCDFMKC-RCGCYFCYTCGKKFKEF----HFANHG-----KEHVTGSKTNENIRVL 562
>Medtr3g463310.2 | C6HC-type zinc finger RING/U-box protein | HC |
chr3:25346747-25345141 | 20130731
Length = 237
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 4 PGLLKHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDED------HHAQCP 55
P LKH+L + +WE + E + S +CP C ++ D ++CP
Sbjct: 88 PKHLKHILPKQLIVKWEFLASELSKPSEPKT-YCPYANCSVLLGKENDIGREFNSSSRCP 146
Query: 56 QCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEI 115
C FC C+ H G+ C + Q ++ +N D +K L + E
Sbjct: 147 SCHRQFCAKCKVPWHAGMNCQKFQ---QFKRNDKN------DLDKKFLVLAKE------- 190
Query: 116 HRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDETDPY 161
+ K CP+C M + ++ GC+ MKC CG FCY+C K T +
Sbjct: 191 -QQWKRCPNCFMYVKKSAGCSLMKC-RCGCKFCYKCGKKRSFTSAH 234
>Medtr3g463310.1 | C6HC-type zinc finger RING/U-box protein | HC |
chr3:25346747-25344649 | 20130731
Length = 237
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 4 PGLLKHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDED------HHAQCP 55
P LKH+L + +WE + E + S +CP C ++ D ++CP
Sbjct: 88 PKHLKHILPKQLIVKWEFLASELSKPSEPKT-YCPYANCSVLLGKENDIGREFNSSSRCP 146
Query: 56 QCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEI 115
C FC C+ H G+ C + Q ++ +N D +K L + E
Sbjct: 147 SCHRQFCAKCKVPWHAGMNCQKFQ---QFKRNDKN------DLDKKFLVLAKE------- 190
Query: 116 HRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDETDPY 161
+ K CP+C M + ++ GC+ MKC CG FCY+C K T +
Sbjct: 191 -QQWKRCPNCFMYVKKSAGCSLMKC-RCGCKFCYKCGKKRSFTSAH 234
>Medtr2g044290.1 | C6HC-type zinc finger RING/U-box protein | LC |
chr2:19270076-19270864 | 20130731
Length = 262
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 23/138 (16%)
Query: 8 KHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIED---EDHHAQCPQCFFSFC 62
+ +L E ++RW + E + +S+ +CP C I D +++CP C FC
Sbjct: 139 RFILPAEVFDRWGQGLCE-AMFDVSEKFYCPFADCSALLINDGIDTVKNSECPNCNRMFC 197
Query: 63 TLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKLC 122
C+ H GI C E +L D+++KE M+ + K+ R C
Sbjct: 198 AKCKVPWHEGIECSEFE-------------KLNADERKKEDVMLMRLAKDKKWRR----C 240
Query: 123 PSCDMAISRTEGCNKMKC 140
P C + ++++EGCN M C
Sbjct: 241 PKCRIYVAKSEGCNSMLC 258
>Medtr3g462530.1 | IBR domain protein | LC | chr3:24990527-24991932
| 20130731
Length = 316
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 2 IPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDHHA----QCP 55
+ P L+ +L + WES E ++A + + +CP C + DE A +CP
Sbjct: 55 LKPEHLQCILPKKIIVDWESANCEASIA-LKEKFYCPYKNCSLLLVNDEAGRAITSCECP 113
Query: 56 QCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEI 115
C FC C+ H + C E + + Q RK LE+
Sbjct: 114 YCHRLFCAQCKVPWHGNMNCQEFE--------KSEIGQGLKQSDRKFLELAKR------- 158
Query: 116 HRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNK 153
K CP C M + RT GC M+C CG +FCY C +
Sbjct: 159 -EKWKRCPKCSMHVQRTTGCEHMRC-RCGCHFCYMCGR 194
>Medtr2g044250.1 | zinc finger protein | LC | chr2:19254401-19255308
| 20130731
Length = 261
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 8 KHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDH---HAQCPQCFFSFC 62
+ +L E ++RW + E L S+ +CP C I DE A+CP C FC
Sbjct: 128 QSILPAEVFDRWGNASCE-VLIDDSEKFYCPFADCSALLINDETEAVMKAECPYCERMFC 186
Query: 63 TLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKLC 122
C+ H GI C E L D++ KE M+ + K+ R C
Sbjct: 187 AQCKVPWHEGIECSEFE-------------TLNADEREKEDVMLVGLAKDKKWMR----C 229
Query: 123 PSCDMAISRTEGCNKMKC 140
P+C + ++++ GCN MKC
Sbjct: 230 PNCRIYVAKSHGCNSMKC 247
>Medtr8g022900.1 | C6HC-type zinc finger RING/U-box protein | LC |
chr8:8149583-8148268 | 20130731
Length = 270
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 10 LLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDHHA---QCPQCFFSFCTL 64
++ + +ERW +++ S ++CP C + D + +CP C FC
Sbjct: 124 IIPKDVFERWGDALVDSMFGSKK--IYCPFKDCSAMLVNDGNEVVRITECPHCHRLFCAQ 181
Query: 65 CRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKLCPS 124
C+ H + C ++ LK RK+L+++ L+ K + K CP
Sbjct: 182 CQVPWHTEVDCREFQI-------------LKKGGPRKDLDLMALELAKK---KKWKRCPR 225
Query: 125 CDMAISRTEGCNKMKCGN------CGQYFCYRC 151
C+ + + GCN ++C CG FCY C
Sbjct: 226 CNFYVEKKGGCNHIRCSYKVFVILCGHQFCYGC 258
>Medtr3g463280.1 | E3 ubiquitin-protein ligase RNF144A-like protein,
putative | LC | chr3:25334962-25333661 | 20130731
Length = 266
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 4 PGLLKHLLADEDYERWESMMLEKTLASMSDVVHCPRCETPCIEDEDH---------HAQC 54
P H+L + +++WE ++ E ++ S +CP + D++ ++C
Sbjct: 87 PKHFNHILPKKVFDKWEYLISEFSIPSEKKT-YCPFENCSVLLDKEDLIEKDVDKCSSKC 145
Query: 55 PQCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKE 114
P C FC C+ H G++C + Q +K R N + +L+ I L+ E
Sbjct: 146 PSCHRRFCAKCKVPWHGGMSC----ERFQAIK-RSNPN---------DLDTIFLELAKSE 191
Query: 115 IHRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNK 153
+ + CP C M + R GC+ ++C CG FCY C K
Sbjct: 192 MWQR---CPHCSMFVKRVHGCSYIQC-RCGCKFCYDCGK 226
>Medtr2g044440.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:19326432-19327307 | 20130731
Length = 291
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 8 KHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDH---HAQCPQCFFSFC 62
+ +L ED++RW + E + +++ +CP C I D ++CP C FC
Sbjct: 155 RAILPVEDFDRWGKALCE-AMFDVNEKFYCPFPDCSALLINDGTEAVLQSECPNCRRLFC 213
Query: 63 TLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKLC 122
C+ H GI C +L D++ K M+ ++ K+ R C
Sbjct: 214 AQCKVSWHDGIGC-------------SEFQKLNADERGKNDIMLMKLAKEKQWKR----C 256
Query: 123 PSCDMAISRTEGCNKMKC 140
P+C ++++EGC MKC
Sbjct: 257 PNCKYYVAKSEGCLYMKC 274
>Medtr2g044420.1 | C6HC-type zinc finger RING/U-box protein | LC |
chr2:19314343-19315173 | 20130731
Length = 276
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 23/138 (16%)
Query: 8 KHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDH---HAQCPQCFFSFC 62
+ +L + +ERW + E L +S+ +CP C I+D +++CP C FC
Sbjct: 146 RSILPAKVFERWGKALCE-ALFDVSNKFYCPFPDCSALLIDDGTEAVRNSECPNCNRMFC 204
Query: 63 TLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKLC 122
C+ H G C +E +L D+ +KE M+ + K+ R C
Sbjct: 205 AQCKVPWHEGFKCNKVE-------------KLNADETKKEDVMLMRLAKKKKWMR----C 247
Query: 123 PSCDMAISRTEGCNKMKC 140
P C + ++R+ GC+ M C
Sbjct: 248 PKCRIYVARSMGCDHMVC 265
>Medtr1g105450.1 | C6HC-type zinc finger RING/U-box protein | HC |
chr1:47455571-47456145 | 20130731
Length = 146
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 26/156 (16%)
Query: 10 LLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDED-----HHAQCPQCFFSFC 62
LL E +++W + E ++ +CP C +++ + ++CP C FC
Sbjct: 3 LLPKELFDKWNDALCEALFVTVPKF-YCPFKDCSAMLLDENEGVEDIRESECPFCHRLFC 61
Query: 63 TLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKLC 122
C H GI C + L D++ +E ++ E+ + K+ R C
Sbjct: 62 ARCHVPWHPGIDC-------------EEYQTLNADERGREDLLVRELANEKKWRR----C 104
Query: 123 PSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDET 158
P+C + +TEGC + C C FCY C + T
Sbjct: 105 PTCKFYVEKTEGCLHITC-RCRFEFCYACGEQWTST 139