Miyakogusa Predicted Gene

Lj2g3v1472980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1472980.1 tr|B8CEW1|B8CEW1_THAPS Valine--tRNA ligase-like
protein OS=Thalassiosira pseudonana
GN=THAPSDRAFT_42,39.5,3e-19,tRNA-synt_1,Aminoacyl-tRNA synthetase,
class Ia; no description,NULL; Nucleotidylyl
transferase,NULL,CUFF.37255.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g027620.1 | valyl-tRNA synthetase/valine-tRNA ligase | HC ...   223   4e-59
Medtr1g101620.2 | valyl-tRNA synthetase/valine-tRNA ligase | HC ...    53   6e-08
Medtr1g101620.1 | valyl-tRNA synthetase/valine-tRNA ligase | HC ...    53   6e-08

>Medtr6g027620.1 | valyl-tRNA synthetase/valine-tRNA ligase | HC |
           chr6:9605327-9589286 | 20130731
          Length = 980

 Score =  223 bits (567), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/119 (88%), Positives = 114/119 (95%)

Query: 1   MSKTLGNVIDPIDTIKDFGTDALRFTLALGTAGQDLNLSSERLTSNKAFTNKLWNAGKFI 60
           MSKTLGNVIDP+DTIKDFGTDALRFT+ALGTAGQDLNLS+ERLTSNKAFTNKLWNAGKF+
Sbjct: 604 MSKTLGNVIDPLDTIKDFGTDALRFTVALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFV 663

Query: 61  LQNLPNENDTSAWENILSHKFDGEGSVLNLPLPECWVVSKLHLLIDSVSASYDKFYFGE 119
           LQNLP END SAWENILS+KFD E SVLNLPLPECWVVSKLHLLI+S +A+YDKF+FGE
Sbjct: 664 LQNLPKENDVSAWENILSYKFDTEDSVLNLPLPECWVVSKLHLLIESATANYDKFFFGE 722


>Medtr1g101620.2 | valyl-tRNA synthetase/valine-tRNA ligase | HC |
           chr1:45900200-45890846 | 20130731
          Length = 1053

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 49/151 (32%)

Query: 1   MSKTLGNVIDPIDTI------------------------------KDF-------GTDAL 23
           MSK+LGNVIDPI+ I                              KDF       G DAL
Sbjct: 658 MSKSLGNVIDPIEVINGITLEGLHTRLEGGNLDPKELAVAIEGQKKDFPNGIEECGADAL 717

Query: 24  RFTLALGTAGQD-LNLSSERLTSNKAFTNKLWNAGKFILQNLPNENDTSAWENILSHKFD 82
           RF L   TA  D +NL  +R+   + + NKLWNA +F +  L ++    A  N+      
Sbjct: 718 RFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPA--NL------ 769

Query: 83  GEGSVLNLPLPECWVVSKLHLLIDSVSASYD 113
              ++ NLP    W++S L+  I  ++ S +
Sbjct: 770 ---TLDNLPFSCQWILSVLNKTISKITKSLE 797


>Medtr1g101620.1 | valyl-tRNA synthetase/valine-tRNA ligase | HC |
           chr1:45900200-45890846 | 20130731
          Length = 1053

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 49/151 (32%)

Query: 1   MSKTLGNVIDPIDTI------------------------------KDF-------GTDAL 23
           MSK+LGNVIDPI+ I                              KDF       G DAL
Sbjct: 658 MSKSLGNVIDPIEVINGITLEGLHTRLEGGNLDPKELAVAIEGQKKDFPNGIEECGADAL 717

Query: 24  RFTLALGTAGQD-LNLSSERLTSNKAFTNKLWNAGKFILQNLPNENDTSAWENILSHKFD 82
           RF L   TA  D +NL  +R+   + + NKLWNA +F +  L ++    A  N+      
Sbjct: 718 RFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPA--NL------ 769

Query: 83  GEGSVLNLPLPECWVVSKLHLLIDSVSASYD 113
              ++ NLP    W++S L+  I  ++ S +
Sbjct: 770 ---TLDNLPFSCQWILSVLNKTISKITKSLE 797