Miyakogusa Predicted Gene
- Lj2g3v1471890.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1471890.1 tr|B6SS58|B6SS58_MAIZE Ribonucleoprotein OS=Zea
mays PE=2 SV=1,38.2,0.000000005,RRM_1,RNA recognition motif domain;
RRM_6,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
,CUFF.37245.1
(285 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 259 3e-69
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 123 2e-28
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 123 2e-28
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 122 3e-28
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 113 2e-25
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 109 4e-24
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 108 5e-24
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 104 1e-22
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 104 1e-22
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 103 2e-22
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 93 3e-19
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 93 3e-19
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 85 8e-17
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 79 5e-15
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 78 9e-15
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 74 2e-13
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 73 4e-13
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 73 4e-13
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 71 1e-12
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 70 2e-12
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 69 6e-12
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 69 7e-12
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 5e-11
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 7e-10
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 4e-09
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 4e-09
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 5e-09
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 6e-09
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 7e-09
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 7e-09
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 8e-09
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 8e-09
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 57 2e-08
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 56 5e-08
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 5e-08
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c... 54 2e-07
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c... 54 2e-07
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c... 54 2e-07
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 53 3e-07
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 52 5e-07
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 52 5e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 52 6e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 52 7e-07
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 52 8e-07
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 52 8e-07
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 52 8e-07
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 1e-06
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 51 1e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 4e-06
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 49 6e-06
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 7e-06
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 178/285 (62%), Gaps = 15/285 (5%)
Query: 1 MAALESSLSVFAPQRFSTI--HLFPAKPPEFVKXXXXXXX----------XXXXXXXXXX 48
MA LES+L+VF QRFS + F +K P+ +K
Sbjct: 1 MATLESTLTVFTHQRFSNNNNYRFLSKSPDSIKLHASTSIPSSSSFSLFSHNNHKLHFSS 60
Query: 49 XXKTPKPCTQLCSXXXXXXXXXXXXXXXXXXXXTYIKKKLYVFNLPWSMSAADIKDLFGQ 108
K+ C L +KK L VFNLPWS+S DIKDLFGQ
Sbjct: 61 SSKSKTLCYAL--QEVTEASATTEEEEAKTETLNNVKKNLIVFNLPWSLSKPDIKDLFGQ 118
Query: 109 CGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKFDTLELSGRILRVELAKRFKKXX 168
CGTV DVEII+ KDG+GKGY FVTM SGE AQAAVDKF+ E+SGRILRVE AK FKK
Sbjct: 119 CGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVDKFNATEISGRILRVEFAKGFKKPR 178
Query: 169 XXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGF 228
EAR+VIYASNLAWK RSTHLR+ FTENFK P+SAR+VF P G + GYGF
Sbjct: 179 PPPPAPTPK-EARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQVPGGKSAGYGF 237
Query: 229 ISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKEAGSEKDED 273
+SY T+EEAEAAISAL GKEL+GR L +KISE+KVKEAGSE+ E+
Sbjct: 238 VSYHTEEEAEAAISALQGKELLGRPLLVKISERKVKEAGSEEVEE 282
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 113/197 (57%), Gaps = 10/197 (5%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
++L+V NLP+S+S++ + LFG+ G V VEI+ R +G+AFVTM + E+A+ A+
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 145 KFDTLELSGRILRVELAKR--FKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
FD + GR ++V + K ++ H IYA NL W + S +LR+ F
Sbjct: 168 MFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAF 227
Query: 203 TENFKAP--LSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKIS- 259
K P LSA++V++ +G + GYGF+S+ T E+ E A+SA++G E+ GR L LK++
Sbjct: 228 A---KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Query: 260 -EKKVKEAGSEKDEDLD 275
+K K ++D
Sbjct: 285 DNRKPSSLDQNKGNNVD 301
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 113/197 (57%), Gaps = 10/197 (5%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
++L+V NLP+S+S++ + LFG+ G V VEI+ R +G+AFVTM + E+A+ A+
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 145 KFDTLELSGRILRVELAKR--FKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
FD + GR ++V + K ++ H IYA NL W + S +LR+ F
Sbjct: 168 MFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAF 227
Query: 203 TENFKAP--LSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKIS- 259
K P LSA++V++ +G + GYGF+S+ T E+ E A+SA++G E+ GR L LK++
Sbjct: 228 A---KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Query: 260 -EKKVKEAGSEKDEDLD 275
+K K ++D
Sbjct: 285 DNRKPSSLDQNKGNNVD 301
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 104/180 (57%), Gaps = 8/180 (4%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
+LYV NLP+SM+++ + D+F + GTV VEI+ + R +G+AFVTM S EEA+ A+
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 146 FDTLELSGRILRVEL------AKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLR 199
FD ++ GR +V +R ++ H IYA NL W + S LR
Sbjct: 170 FDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLR 229
Query: 200 EFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKIS 259
+ F E L A+I+++ +G + G+GF+++ T E EAA++A++G E+ GR L L ++
Sbjct: 230 DAFDEQ-PGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLA 288
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGR-GKGYAFVTMASGEEAQAAVDK 145
KL+V N P+ + + + LFGQ GTV E+I + +G+ FVTM++ EEA++AV+K
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 146 FDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTEN 205
F+ + +GR L V A E IY +NLAW+V ++ L + F+E+
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEH 229
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
K +SAR+V+D +G + G+GF++ + E AI+ALDG+ L GR++ + ++E +
Sbjct: 230 GKI-VSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDR 285
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 100/179 (55%), Gaps = 8/179 (4%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAV 143
+ KLY NLP+S+ +A + L + G+ +E++ +D G+ +G+AFVTM+ E+ A +
Sbjct: 112 RTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVI 171
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
D E GR LRV + + K E + ++ NLAW V S L + F
Sbjct: 172 QNLDGKEFMGRTLRVNFSDKPKPKEPLYP------ETEYKLFVGNLAWTVTSESLTQAFQ 225
Query: 204 ENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
E+ + AR++FD +G + GYGF+SY TK E + A++ +D EL GR+L + +++ K
Sbjct: 226 EH-GTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGK 283
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 7/182 (3%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
K++V NLP+ + + + LF Q GTV E+I +D R +G+ FVTM++ EE + AV+K
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 146 FDTLELSGRILRV-ELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTE 204
F EL GR+L V + A R A Y NL W V ++ L + F+E
Sbjct: 183 FSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRA----YVGNLPWDVDNSSLEQLFSE 238
Query: 205 NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
+ K SA++V+D +G + G+GF++ + E AI+ALDG+ GR++ + ++E++ +
Sbjct: 239 HGKVE-SAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEERPR 297
Query: 265 EA 266
+
Sbjct: 298 RS 299
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+L N+PWS + D++ LF + G V VE+ R +G AFV M S EEA A++
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEEASEALNSL 149
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ E GRI+ ++ AK K+ + ++ +N ++ RS ++EFF
Sbjct: 150 QSYEFDGRIINIQYAKPKKEKIPPPVERKPIT---YNLFVANFPYEARSKDVKEFFDSGT 206
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK-- 264
+SA ++F +GYGF+SY +K+EA+ A++ GK MGR L + S++ V+
Sbjct: 207 GKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRVAPSKRFVQLA 266
Query: 265 --EAGSE 269
AGSE
Sbjct: 267 EESAGSE 273
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+L N+PWS + D++ LF + G V VE+ R +G AFV M S EEA A++
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEEASEALNSL 149
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ E GRI+ ++ AK K+ + ++ +N ++ RS ++EFF
Sbjct: 150 QSYEFDGRIINIQYAKPKKEKIPPPVERKPIT---YNLFVANFPYEARSKDVKEFFDSGT 206
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK-- 264
+SA ++F +GYGF+SY +K+EA+ A++ GK MGR L + S++ V+
Sbjct: 207 GKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRVAPSKRFVQLA 266
Query: 265 --EAGSE 269
AGSE
Sbjct: 267 EESAGSE 273
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGR-GKGYAFVTMASGEEAQAAVDK 145
KL+V N P+ + + + LFGQ GTV E+I + +G+ FVTM++ EEA++AV+K
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 146 FDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTEN 205
F+ + +GR L V A E IY +NLAW+V ++ L + F+E+
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEH 229
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGK 247
K +SAR+V+D +G + G+GF++ + E AI+ALDG+
Sbjct: 230 GKI-VSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 17/196 (8%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAV 143
++L+V NLP+S+ +A + ++F G V VE+I K GR +G+ FVTM+S E +AA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 144 DKFDTLELSGRILRVELAK---------------RFKKXXXXXXXXXXXXEARHVIYASN 188
+ + + GR LRV RF + + ++ N
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 189 LAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKE 248
LAW V + L F E + L A++++D SG + G+GF+++ + +E ++AI LDG +
Sbjct: 203 LAWGVDNLALESLFGEQGQV-LEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGAD 261
Query: 249 LMGRSLFLKISEKKVK 264
L GR++ + ++ + K
Sbjct: 262 LNGRAIRVSPADSRPK 277
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 17/196 (8%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAV 143
++L+V NLP+S+ +A + ++F G V VE+I K GR +G+ FVTM+S E +AA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 144 DKFDTLELSGRILRVELAK---------------RFKKXXXXXXXXXXXXEARHVIYASN 188
+ + + GR LRV RF + + ++ N
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 189 LAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKE 248
LAW V + L F E + L A++++D SG + G+GF+++ + +E ++AI LDG +
Sbjct: 203 LAWGVDNLALESLFGEQGQV-LEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGAD 261
Query: 249 LMGRSLFLKISEKKVK 264
L GR++ + ++ + K
Sbjct: 262 LNGRAIRVSPADSRPK 277
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 97/172 (56%), Gaps = 4/172 (2%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
+KLYV N+P ++S +++ + + G V E++ K R + +AFVTM + E+A AA +
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAE 119
Query: 145 KFDTLELSGRILRVELAKR--FKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
K + E+ GR ++V + ++ + ++ + +Y NLA V S L++FF
Sbjct: 120 KLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKFF 179
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
+E A LSA++ + ++G+GF+++ + E+ EAAIS+ + L G+ +
Sbjct: 180 SEKGNA-LSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKI 230
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV NL + + D+K LF G +T I++ ++G K + FV S + A AAV+K
Sbjct: 106 NVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 147 D-TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHV-------IYASNLAWKVRSTHL 198
+ T G++L V A+R + + + +Y NL + L
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKL 225
Query: 199 REFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKI 258
+E F+E F S +++FD G + G+GF+++ T EEA AI+ + GK + + L++ +
Sbjct: 226 KEMFSE-FGTITSCKVMFDA-HGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVV 283
Query: 259 SEKK 262
+++K
Sbjct: 284 AQRK 287
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
+YV NL S + D+K+ FG GT+T ++R DGR K + FV + E+A AV+
Sbjct: 211 NNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEA 270
Query: 146 FDTLELSGRILRV-----------ELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVR 194
+ ++ + V EL RF++ +Y NL +
Sbjct: 271 LNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLN---LYLKNLDDSIT 327
Query: 195 STHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
L+E F+E F S +I+ D P+G + G GF+++ T EEA A+ ++GK ++ + L
Sbjct: 328 DEKLKEMFSE-FGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPL 385
Query: 255 FLKISEKK 262
++ ++++K
Sbjct: 386 YVAVAQRK 393
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 12/175 (6%)
Query: 83 YIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRG-KDGRGKGYAFVTMASGEEAQA 141
++ LYV +L +++ + + DLF Q G V V + R R GY +V + ++A
Sbjct: 29 FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAAR 88
Query: 142 AVDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREF 201
A+D + ++ + +RV + R I+ NL + L +
Sbjct: 89 ALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTAN---------IFIKNLDKTIDHKALHDT 139
Query: 202 FTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
F+ +F +S +I D SG + GYGF+ + ++ A+ AI L+G + + +F+
Sbjct: 140 FS-SFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFV 192
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+++ NL ++ + D F G + +I G+ KGY FV + + AQ A+DK
Sbjct: 121 NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ + ++ + +V + +K + +Y NL+ L+ F
Sbjct: 181 NGMLINDK--QVFVGHFLRKQDRDNVLSKTKF---NNVYVKNLSESFTEDDLKNEFGA-- 233
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKEA 266
+++ ++ G + +GF+++ E+A A+ AL+GK++ + ++ ++KK
Sbjct: 234 YGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKK---- 289
Query: 267 GSEKDEDL 274
SE++++L
Sbjct: 290 -SEREQEL 296
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAV-- 143
+YV NL S++ D+K+ FG+ GT+T ++R DG+ K + FV + + A AV
Sbjct: 203 NNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEA 262
Query: 144 ---DKFDTLE-LSGRILR-----VELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVR 194
KFD E G+ L+ +EL +R ++ +Y NL V
Sbjct: 263 LNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGAN----LYLKNLDDSVT 318
Query: 195 STHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
L E F+E F S +I+ D P G + G GF+++ T EEA A++ ++GK + G+ L
Sbjct: 319 DEKLSELFSE-FGTVTSCKILRD-PQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPL 376
Query: 255 FLKISEKK 262
++ ++KK
Sbjct: 377 YVAPAQKK 384
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRG-KDGRGKGYAFVTMASGEEAQAAVDKF 146
LYV +L ++ + + DLF Q G V V I R + GY +V ++ +A A+D
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ L+ + +R+ + R I+ NL + L + F+ F
Sbjct: 86 NFTPLNNKPIRIMYSHRDPSVRKSGAAN---------IFIKNLDRAIDHKALYDTFSI-F 135
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
LS +I D SG + GYGF+ + +E A++AI L+G L + +++ ++K
Sbjct: 136 GNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRK 190
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 90/199 (45%), Gaps = 12/199 (6%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+++ NL ++ + D F G + +I G KGY FV + E AQ+A+DK
Sbjct: 113 NIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ + L+ + + V +R + + +Y NL+ V L+ F E
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDRDNALSNAKF-----NNVYVKNLSESVTDDDLKNTFGE-- 225
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKEA 266
+++ +V G + +GF+++ + A A+ AL+GK+ + ++ + KK
Sbjct: 226 YGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKY--- 282
Query: 267 GSEKDEDLDQGHDAPTEES 285
E++ +L + H+ +E+
Sbjct: 283 --ERELELKERHEQSMKET 299
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV N+ + + D+K LFG G +T +++ +G+ + + FV S + A AAV+K
Sbjct: 210 NVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 147 -------DTLELSGRILR-----VELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVR 194
D + GR R EL +F++ +Y NL
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGAN----LYLKNLDDDFN 325
Query: 195 STHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
L++ F+E F S R++ D+ G + G GF+++ T EEA A++ ++GK + + L
Sbjct: 326 EEKLKDLFSE-FGTVTSCRVMLDS-HGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPL 383
Query: 255 FLKISEKK 262
F+ ++++K
Sbjct: 384 FVAVAQRK 391
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 29/212 (13%)
Query: 83 YIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGK-GYAFVTMASGEEAQA 141
+ LYV +L S++ + DLF Q V + + R + R GYA+V + ++A
Sbjct: 27 FANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAAN 86
Query: 142 AVDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREF 201
A + + L+ + +R+ ++R ++ NL + L +
Sbjct: 87 AKELLNFTPLNEKPIRIMFSQR---------DPSVRKSGSGNVFIKNLDTSIDHKALHDT 137
Query: 202 FTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKI--- 258
F F LS ++ D +G + GYGF+ + +E A++AI LDG + + +++
Sbjct: 138 FAA-FGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVR 195
Query: 259 SEKKVKEAGSEK--------------DEDLDQ 276
+++ + GS K DEDL Q
Sbjct: 196 HQERARTNGSPKFTNVYVKNISEASTDEDLKQ 227
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+++ NL S+ + D F G V ++ +G+ KGY FV + E A++A+ +
Sbjct: 119 NVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
D + ++ + + V R ++ +Y N++ L++ F F
Sbjct: 179 DGMLINDKQVYVGFFVRHQERARTNGSPKFTN-----VYVKNISEASTDEDLKQLFGP-F 232
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELM-GRSLFLKISEKKVK 264
SA ++ D +G + +GF+++ + + A AA+ L+G + + LF+ +++K +
Sbjct: 233 GMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAE 290
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV N+ + + D+K LFG G +T +++ +G+ + + FV S + A AAV+K
Sbjct: 210 NVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 147 -------DTLELSGRILR-----VELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVR 194
D + GR R EL +F++ +Y NL
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGAN----LYLKNLDDDFN 325
Query: 195 STHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
L++ F+E F S R++ D+ G + G GF+++ T EEA A++ ++GK + + L
Sbjct: 326 EEKLKDLFSE-FGTVTSCRVMLDS-HGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPL 383
Query: 255 FLKISEKK 262
F+ ++++K
Sbjct: 384 FVAVAQRK 391
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 29/212 (13%)
Query: 83 YIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGK-GYAFVTMASGEEAQA 141
+ LYV +L S++ + DLF Q V + + R + R GYA+V + ++A
Sbjct: 27 FANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAAN 86
Query: 142 AVDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREF 201
A + + L+ + +R+ ++R ++ NL + L +
Sbjct: 87 AKELLNFTPLNEKPIRIMFSQR---------DPSVRKSGSGNVFIKNLDTSIDHKALHDT 137
Query: 202 FTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKI--- 258
F F LS ++ D +G + GYGF+ + +E A++AI LDG + + +++
Sbjct: 138 FAA-FGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVR 195
Query: 259 SEKKVKEAGSEK--------------DEDLDQ 276
+++ + GS K DEDL Q
Sbjct: 196 HQERARTNGSPKFTNVYVKNISEASTDEDLKQ 227
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+++ NL S+ + D F G V ++ +G+ KGY FV + E A++A+ +
Sbjct: 119 NVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
D + ++ + + V R ++ +Y N++ L++ F F
Sbjct: 179 DGMLINDKQVYVGFFVRHQERARTNGSPKFTN-----VYVKNISEASTDEDLKQLFGP-F 232
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELM-GRSLFLKISEKKVK 264
SA ++ D +G + +GF+++ + + A AA+ L+G + + LF+ +++K +
Sbjct: 233 GMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAE 290
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 102/191 (53%), Gaps = 14/191 (7%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
++V NL S+ + ++D+F + G + +++ +DG+ KGY FV + E A AA+++
Sbjct: 99 NVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERL 158
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHV-IYASNLAWKVRSTHLREFFTEN 205
+ + + ++ + K KK + R+ +Y NL + T LRE F+ +
Sbjct: 159 NGYLVGDK--QIYVGKFVKK----SDRISSGPDTRYTNLYMKNLDLDISETLLREKFS-S 211
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKE 265
F +S + D+ +G + G+GF+++ E+A+ A+ ++G +L + L++ ++KK
Sbjct: 212 FGKIISLAVAKDS-NGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKK--- 267
Query: 266 AGSEKDEDLDQ 276
+E+++ L Q
Sbjct: 268 --AEREQILHQ 276
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
LY+ NL +S +++ F G + + + + +G KG+ FV + E+A+ A++
Sbjct: 190 NLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHV-------IYASNLAWKVRSTHLR 199
+ L+L +IL V A++ + V IY N+ V LR
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 200 EFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKIS 259
+ F+ SA+I+ D G + G+GF+ + T EEA A+++ G G+ L++ ++
Sbjct: 310 DHFSV-CGTITSAKIMRDD-KGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLA 367
Query: 260 EKK 262
++K
Sbjct: 368 QRK 370
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 83 YIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAA 142
Y +YV N+ ++S ++D F CGT+T +I+R G KG+ FV ++ EEA A
Sbjct: 289 YKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKA 348
Query: 143 VDKFDTLELSGRILRVELAKR 163
V+ F G+ L V LA+R
Sbjct: 349 VNSFHGFMFHGKPLYVSLAQR 369
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIR-GKDGRGKGYAFVTMASGEEAQAAVDKF 146
LYV +L +S + + D F T+ V I R G+ Y +V S +A A++
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHV----IYASNLAWKVRSTHLREFF 202
+ L+G+ +RV ++R +AR ++ NLA + ++ L + F
Sbjct: 72 NHSTLNGKAIRVMWSRR-------------DPDARKSCIGNVFVKNLAESIDNSGLEDMF 118
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
+ F LS+++V + G + GYGF+ + T+E A AAI L+G + + +++
Sbjct: 119 KK-FGNILSSKVVM-SEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYV 170
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 10/184 (5%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV NL S + D+K LF G +T V I++ +G K + FV S + A AV+K
Sbjct: 201 NVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKL 260
Query: 147 D-TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHV-------IYASNLAWKVRSTHL 198
+ + G++L V A++ + + + +Y N+ + L
Sbjct: 261 NGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKL 320
Query: 199 REFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKI 258
+E F+E F S +++ D G + G GF+++ T EEA AI ++GK + + +++ +
Sbjct: 321 KELFSE-FGTITSCKVMSDA-RGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSV 378
Query: 259 SEKK 262
+++K
Sbjct: 379 AQRK 382
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 18/173 (10%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGK-GYAFVTMASGEEAQAAVDKF 146
LYV +L +++ A + DLF Q V V + R + + GY +V ++ +A A++
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 147 DTLELSGRILRVELAKR---FKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
+ + L+G+ +R+ + R +K ++ NL + + L E F+
Sbjct: 87 NYVPLNGKPIRIMFSHRDPLIRKTGFAN------------LFIKNLETSIDNKALHETFS 134
Query: 204 ENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
F LS ++ D+ +G + G+GF+ + + A+ AI LDG + + +++
Sbjct: 135 V-FGNVLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYV 185
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
L++ NL S+ + + F G V ++ +G KG+ FV + + A+ A++K
Sbjct: 114 NLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKL 173
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
D + ++ + + V R ++ +Y NL+ L++ F N
Sbjct: 174 DGMLMNDKKVYVGYFVRCQERSSPKFTN---------VYVKNLSESYTYEDLKQLF--NS 222
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELM-GRSLFLKISEKKVKE 265
+++ ++ +G + +GF+++ + + A A+ L+G G+ LF+ ++KK
Sbjct: 223 FGVITSVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKK--- 279
Query: 266 AGSEKDEDL 274
SE++ +L
Sbjct: 280 --SEREAEL 286
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVD 144
K ++V NL S+ + DLF + G + +I R +DG+ KG+ ++ S E A A+
Sbjct: 102 KGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQ 161
Query: 145 KFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTE 204
K + + R ++ + K +K +Y NL V HL E F+
Sbjct: 162 KMNGSTV--RDKQIYVGKFIRKSERSLPDLDAKFTN---LYVKNLDPVVTEKHLGEKFS- 215
Query: 205 NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
+F +S I D +G + G+GF++Y + ++A A+ A+DG + + L++ ++KKV+
Sbjct: 216 SFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVE 274
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 5/179 (2%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
LYV NL ++ + + F G + + I + ++G+ KG+ FV S ++A+ A++
Sbjct: 195 NLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHV---IYASNLAWKVRSTHLREFFT 203
D + +IL V A++ + +H+ IY N+ V LR+ F+
Sbjct: 255 DGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFS 314
Query: 204 ENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
+ LSA+++ D G + G+GF+ + T EA ++S +G G+ L++ ++KK
Sbjct: 315 ACGEV-LSAKVMRDDK-GTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKK 371
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 80/170 (47%), Gaps = 12/170 (7%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIR-GKDGRGKGYAFVTMASGEEAQAAVDKF 146
LYV +L ++ A + F + T+ + + G+ Y +V ++S +EA A++
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ L+G+++RV R + ++ NLA + + L + F + +
Sbjct: 77 NHSSLNGKVIRVMWLSR---------DADARKSGKGNVFVKNLAASIDNVGLHDLF-QKY 126
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
LS++I + G + G+G+I + ++E A AI ++G + + +++
Sbjct: 127 GNILSSKIA-RSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYV 175
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 82 TYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRG-KDGRGKGYAFVTMASGEEAQ 140
++ LYV +L +++ + + DLF Q G V V + R R GY +V ++ ++A
Sbjct: 30 NFVTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAA 89
Query: 141 AAVDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLRE 200
A+D + L+ R +R+ + R + I+ NL + L +
Sbjct: 90 RALDVLNFTPLNNRPIRIMYSHR---------DPSIRKSGQGNIFIKNLDKAIDHKALHD 140
Query: 201 FFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
F+ +F LS ++ D SG + GYGF+ + T+E A+ AI L+G L + +++
Sbjct: 141 TFS-SFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
++V NL S + ++K FG+ GT+T ++R DG+ K + FV S ++A AV+
Sbjct: 213 NNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEA 272
Query: 146 FDTLELSGRILRV-----------ELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVR 194
+ ++ + V EL +F++ +Y NL +
Sbjct: 273 LNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGAN----LYVKNLDDSIA 328
Query: 195 STHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
L+E F+ ++ S +++ D P+G + G GF+++ T EEA A+ ++GK + + L
Sbjct: 329 DEKLKELFS-SYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPL 386
Query: 255 FLKISEKK 262
++ ++++K
Sbjct: 387 YVTLAQRK 394
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 90/188 (47%), Gaps = 12/188 (6%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+++ NL ++ + D F G + ++ G+ KGY FV + E AQ A++K
Sbjct: 123 NIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ + L+ + +V + +K + ++ NL+ L++ F E F
Sbjct: 183 NGMLLNDK--QVYVGPFLRKQERESTGDRAKF---NNVFVKNLSESTTDDELKKTFGE-F 236
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKEA 266
SA ++ D G + +GF+++ + ++A A+ AL+GK++ + ++ ++KK
Sbjct: 237 GTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKK---- 291
Query: 267 GSEKDEDL 274
SE++ +L
Sbjct: 292 -SEREHEL 298
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 83 YIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAA 142
Y LYV NL S++ +K+LF GT+T +++R +G +G FV ++ EEA A
Sbjct: 313 YQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRA 372
Query: 143 VDKFDTLELSGRILRVELAKR 163
+ + + ++ + L V LA+R
Sbjct: 373 LLEMNGKMVASKPLYVTLAQR 393
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 89 YVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDKFD 147
YV NL +S + +LF Q G V +V + + + + +GY FV S E+A A+ +
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 148 TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENFK 207
++L G+ +RV A + KK ++ NL V L + F+
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGAN----------LFIGNLDPDVDEKLLYDTFSAFGV 137
Query: 208 APLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
+ +I+ D +G + G+GFISY + E +++AI A++G+ L R + + + KK
Sbjct: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
KLYV + +S A +++ F + G V D +I ++ GR KG+ FVT A+ EEA AA+
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 146 FDTLELSGRILRVELAK 162
D EL GR +RV A+
Sbjct: 101 MDNQELHGRTVRVNYAQ 117
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
+Y +++ LRE F + L AR++ D G + G+GF+++ T EEA AA+ A
Sbjct: 42 LYVGGISYSTDDAGLRESFAR-YGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 244 LDGKELMGRSLFLKISEKK 262
+D +EL GR++ + ++++
Sbjct: 101 MDNQELHGRTVRVNYAQER 119
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
+ K+YV +P+ S DI F CGT+T++ + D G+ +G A ++ + A+ A
Sbjct: 218 VATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRA 277
Query: 143 VDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
+ D ++ G L+++ K E + IY +L+W++ LR+FF
Sbjct: 278 L-ALDGADMGGLFLKIQPC----KATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFF 332
Query: 203 TE-NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
+ N KA R+ D +G GY + + + + A+ ALD L GR + +
Sbjct: 333 SNCNVKA---IRLGMDKETGEFRGYAHVDFGDSQSLKTAL-ALDQSVLFGRPVRI 383
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
K L+V NL +S+ +DI+ F CG V DV ++GR KG+ V AS E AQ+A++
Sbjct: 341 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE- 399
Query: 146 FDTLELSGRILRVELAKRF-----KKXXXXXXXXXXXXEARHVI---YASNLAWKVRSTH 197
+ EL R +R++LA+ +++ V + NL
Sbjct: 400 MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 459
Query: 198 LREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAI----SALDGKEL 249
L E F P I D SG++ G+ ++ + + A+ S LDG +L
Sbjct: 460 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQL 515
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
KL+V L WS+ +KD F G VT+V I+ KD GR +G+ FV ++ + A++A D
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 145 KFDTLELSGRILRVELA 161
D L GR LR+ A
Sbjct: 96 AMDGKALLGRPLRINFA 112
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ L+W V L++ F+ +F RIV+D SG A G+GF+ + ++ A++A A
Sbjct: 38 LFVGGLSWSVDEKSLKDAFS-SFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 244 LDGKELMGRSLFLKISEKKVKEAGSEKDEDLDQGH 278
+DGK L+GR L + + +K + D GH
Sbjct: 97 MDGKALLGRPLRINFALEKPRGIPVVVPRFTDNGH 131
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
K L+V NL +S+ +DI+ F CG V DV ++GR KG+ V AS E AQ+A++
Sbjct: 329 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE- 387
Query: 146 FDTLELSGRILRVELAKRF-----KKXXXXXXXXXXXXEARHVI---YASNLAWKVRSTH 197
+ EL R +R++LA+ +++ V + NL
Sbjct: 388 MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 447
Query: 198 LREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAI----SALDGKEL 249
L E F P I D SG++ G+ ++ + + A+ S LDG +L
Sbjct: 448 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQL 503
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
K + V NL +S+ D++D+F CG V DV ++GR +G+ +V + E A+ A+ K
Sbjct: 162 KTICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDREGRFRGFGYVEFGTAEAAKKAL-K 220
Query: 146 FDTLELSGRILRVELA 161
D+ EL R +RV++A
Sbjct: 221 LDSTELLNRRMRVDIA 236
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
K L+V NL +S+ +DI+ F CG V DV ++GR KG+ V AS E AQ+A++
Sbjct: 364 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE- 422
Query: 146 FDTLELSGRILRVELAKRF-----KKXXXXXXXXXXXXEARHVI---YASNLAWKVRSTH 197
+ EL R +R++LA+ +++ V + NL
Sbjct: 423 MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 482
Query: 198 LREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAI----SALDGKEL 249
L E F P I D SG++ G+ ++ + + A+ S LDG +L
Sbjct: 483 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQL 538
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
K L+V NL +S+ +DI+ F CG V DV ++GR KG+ V AS E AQ+A++
Sbjct: 376 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE- 434
Query: 146 FDTLELSGRILRVELAKRF-----KKXXXXXXXXXXXXEARHVI---YASNLAWKVRSTH 197
+ EL R +R++LA+ +++ V + NL
Sbjct: 435 MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 494
Query: 198 LREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAI----SALDGKEL 249
L E F P I D SG++ G+ ++ + + A+ S LDG +L
Sbjct: 495 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQL 550
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
KL++ + +S +++ F + G V D +II +D GR +G+ F+T A+ EEA +A+
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 146 FDTLELSGRILRVELA 161
D EL GR +RV A
Sbjct: 101 MDNKELDGRTVRVNYA 116
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ +++ T LRE F+ + L A+I+ D +G + G+GFI++ T EEA +A+ A
Sbjct: 42 LFIGGVSYSTDETGLREAFSR-YGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 244 LDGKELMGRSLFLKISEKKVK 264
+D KEL GR++ + + ++ +
Sbjct: 101 MDNKELDGRTVRVNYATERAR 121
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
KL++ + +S +++ F + G V D +II +D GR +G+ F+T A+ EEA +A+
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 146 FDTLELSGRILRVELA 161
D EL GR +RV A
Sbjct: 101 MDNKELDGRTVRVNYA 116
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ +++ T LRE F+ + L A+I+ D +G + G+GFI++ T EEA +A+ A
Sbjct: 42 LFIGGVSYSTDETGLREAFSR-YGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 244 LDGKELMGRSLFLKISEKKVK 264
+D KEL GR++ + + ++ +
Sbjct: 101 MDNKELDGRTVRVNYATERAR 121
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 6/187 (3%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + + + F G V ++IIR K G+ +GY F+ S A+ +
Sbjct: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
Query: 145 KFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTE 204
++ ++ G E R H I+ +LA V L+E F
Sbjct: 75 TYNGTQMPG----TEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRT 130
Query: 205 NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
++ + A++V D +G + GYGF+ + + E A+S ++G R + + + K K
Sbjct: 131 HYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPK-K 189
Query: 265 EAGSEKD 271
G +++
Sbjct: 190 TTGYQQN 196
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ +++ L + F++ + L ARI+ D SG + G+GF++Y T EEA +AI A
Sbjct: 46 LFVGGISYNTDEQSLSDAFSK-YGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 244 LDGKELMGRSLFLKISEKKVKEA 266
LDG++L GR + + + ++ ++
Sbjct: 105 LDGQDLYGRRVGVNFANERPRDG 127
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ +++ L + F++ + L ARI+ D SG + G+GF++Y T EEA +AI A
Sbjct: 46 LFVGGISYNTDEQSLSDAFSK-YGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 244 LDGKELMGRSLFLKISEKKVKEA 266
LDG++L GR + + + ++ ++
Sbjct: 105 LDGQDLYGRRVGVNFANERPRDG 127
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ +++ LRE F+ + L ARI+ D +G + G+GFI++ + EEA +AI A
Sbjct: 44 LFIGGVSYSTDENSLREAFSR-YGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 244 LDGKELMGRSLFLKISEKK 262
LDG++L GR + + + ++
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
KL++ + +S +++ F + G V D II ++ GR +G+ F+T S EEA +A+
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 146 FDTLELSGRILRVELAK 162
D +L GR +RV A
Sbjct: 103 LDGQDLHGRRVRVNYAN 119
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 23/193 (11%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
K L++ +L + M + + F G V V++IR K + +GY F+ S A+ +
Sbjct: 74 KTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQ 133
Query: 145 KFD--TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARH------VIYASNLAWKVRST 196
F+ + G+ R+ A E RH I+ +LA V
Sbjct: 134 TFNGTIMPNGGQNFRLNWA------------TFSSGEKRHDDSPDYTIFVGDLAADVSDH 181
Query: 197 HLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
HL E F + + A++V D +G GYGF+ + + E A++ + G ++ + +
Sbjct: 182 HLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQG--VLCSTRPM 239
Query: 257 KISEKKVKEAGSE 269
+I K G++
Sbjct: 240 RIGPASNKNLGTQ 252
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 189 LAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKE 248
+++ LRE F+ + L ARI+ D +G + G+GFI++ + EEA +AI ALDG++
Sbjct: 57 VSYSTDENSLREAFSR-YGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQD 115
Query: 249 LMGRSLFLKISEKK 262
L GR + + + ++
Sbjct: 116 LHGRRVRVNYANER 129
>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + +S DIK+LF + G + + + GR KG A V + ++A AAV ++
Sbjct: 95 KLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRY 154
Query: 147 DTLELSGRILRVEL 160
+ ++L G+ +++E+
Sbjct: 155 NNVQLDGKPMKIEI 168
>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + +S DIK+LF + G + + + GR KG A V + ++A AAV ++
Sbjct: 95 KLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRY 154
Query: 147 DTLELSGRILRVEL 160
+ ++L G+ +++E+
Sbjct: 155 NNVQLDGKPMKIEI 168
>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
chr4:23458840-23463583 | 20130731
Length = 263
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + +S DIK+LF + G + + + GR KG A V + ++A AAV ++
Sbjct: 95 KLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRY 154
Query: 147 DTLELSGRILRVEL 160
+ ++L G+ +++E+
Sbjct: 155 NNVQLDGKPMKIEI 168
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 82 TYIKKKLYVF--NLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEE 138
T K YVF +P+ + D+ +F Q G V D+ ++R K G+ KG+AF+
Sbjct: 30 TKYKDSAYVFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRS 89
Query: 139 AQAAVDKFDTLELSGRILRVE 159
AVD + ++SGRI+RV+
Sbjct: 90 TNLAVDNLNGAQVSGRIIRVD 110
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAV 143
K L++ +L M + + F G +T V++IR K G +GY F S A+ +
Sbjct: 96 NKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVL 155
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
+ + + + A R I+ +LA V + L E F+
Sbjct: 156 QNYAGILMP----NADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFS 211
Query: 204 ENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
++ + +A++V+D +G + GYGF+ + + E A++ ++G R +
Sbjct: 212 SSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPM 262
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 12/188 (6%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
+ +YV N+ +S +++LF G + ++IR + Y FV A A+
Sbjct: 46 RSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEK---SSYGFVDYFDRSSAAIAIVT 102
Query: 146 FDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTEN 205
+ + G+ ++V A I+ +L+ +V L F+
Sbjct: 103 LNGRNIFGQSIKVNWA--------YTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSA- 153
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKE 265
+ + AR+++D +G + G+GF+S+ ++EA++AI+ L GK L R + + K
Sbjct: 154 YSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANM 213
Query: 266 AGSEKDED 273
G + +
Sbjct: 214 NGENQSSE 221
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
++ V NLP ++ +K F + G +TDV+++R K+G+ + +AF+ + +EAQAA+ F
Sbjct: 26 RICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTKNGKSRQFAFIGFRTDQEAQAAIKYF 85
Query: 147 DTLELSGRILRVELAKRF 164
+ L + + E+A++
Sbjct: 86 NKSYLDTQAITCEVAQKL 103
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAV 143
K L++ +L M + + F G +T V++IR K G +GY F S A+ +
Sbjct: 96 NKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVL 155
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
+ + + + A R I+ +LA V + L E F+
Sbjct: 156 QNYAGILMP----NADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFS 211
Query: 204 ENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
++ + +A++V+D +G + GYGF+ + + E A++ ++G R +
Sbjct: 212 SSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPM 262
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 7/187 (3%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + M + FG G +T V++IR K + +GY F+ + A+ +
Sbjct: 60 RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 145 KFD--TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
++ + G+ R+ A H I+ +LA V L+E F
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT----FSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETF 175
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
+ + A++V D +G + GYGF+ + + E A++ + G R + + + K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
Query: 263 VKEAGSE 269
A ++
Sbjct: 236 NPAATTQ 242
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 4/180 (2%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+ +++ +L M + + F G V ++IR K G+ +GY FV + A+ +
Sbjct: 116 RTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQ 175
Query: 145 KFDTLEL--SGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
F+ + + + R+ A F + ++ +LA V L+E F
Sbjct: 176 NFNGTMMPNTDQAFRLNWAT-FSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETF 234
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
F + A++V D+ +G + GYGF+ + + E A++ ++G R + + ++ K
Sbjct: 235 ASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPK 294
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + M + FG G +T V++IR K + +GY F+ + A+ +
Sbjct: 60 RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 145 KFD--TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
++ + G+ R+ A H I+ +LA V L+E F
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT----FSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETF 175
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDG 246
+ + A++V D +G + GYGF+ + + E A++ + G
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQG 219
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + M + FG G +T V++IR K + +GY F+ + A+ +
Sbjct: 60 RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 145 KFD--TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
++ + G+ R+ A H I+ +LA V L+E F
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT----FSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETF 175
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDG 246
+ + A++V D +G + GYGF+ + + E A++ + G
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQG 219
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 179 EARHVIYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAE 238
E +++ + L + S LRE F + F R+V D SG++ G+G++ Y T E+A
Sbjct: 41 EPNEIVFVTGLNKRTTSETLREAF-KKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAA 99
Query: 239 AAISALDGKELMGRSLFLKISEKKVKEAGSE 269
I +DGK L G +F + + ++ S+
Sbjct: 100 KGIQGMDGKFLEGWIVFAEYARPRINAIASQ 130
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDG-RGKGYAFVTMASGEEAQAAV 143
K ++YV +P + D+K+ + G V V I++GKD KG+AFVT + E A A+
Sbjct: 109 KSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAI 168
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
++ + E GR ++ + +A++ ++ N+ L++ T
Sbjct: 169 EELNNTEFKGRKIKCSTS-----------------QAKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 204 ENFKAPLSARIVFDTPS-GWATGYGFISYLTKEEAE 238
+ + +V D + G+ FI Y + AE
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + M + FG G +T V++IR K + +GY F+ + A+ +
Sbjct: 60 RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 145 KFD--TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
++ + G+ R+ A H I+ +LA V L+E F
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT----FSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETF 175
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDG 246
+ + A++V D +G + GYGF+ + + E A++ + G
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQG 219
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ S L+ + + LRE F + F + AR+V D SG++ G+GF+ Y T E+A I
Sbjct: 53 LFVSGLSKRTTTETLREAF-QKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEG 111
Query: 244 LDGKELMGRSLFLKISEKK 262
+DGK L G +F + + +
Sbjct: 112 MDGKFLEGWVIFAEYARPR 130
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDG-RGKGYAFVTMASGEEAQAAV 143
K ++YV +P + D+K+ + G V V I++GKD KG+AFVT + E A A+
Sbjct: 109 KSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAI 168
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
++ + E GR ++ + +A++ ++ N+ L++ T
Sbjct: 169 EELNNTEFKGRKIKCSTS-----------------QAKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 204 ENFKAPLSARIVFDTPS-GWATGYGFISYLTKEEAE 238
+ + +V D + G+ FI Y + AE
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDG-RGKGYAFVTMASGEEAQAAV 143
K ++YV +P + D+K+ + G V V I++GKD KG+AFVT + E A A+
Sbjct: 109 KSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAI 168
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
++ + E GR ++ + +A++ ++ N+ L++ T
Sbjct: 169 EELNNTEFKGRKIKCSTS-----------------QAKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 204 ENFKAPLSARIVFDTPS-GWATGYGFISYLTKEEAE 238
+ + +V D + G+ FI Y + AE
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDG-RGKGYAFVTMASGEEAQAAV 143
K ++YV +P + D+K+ + G V V I++GKD KG+AFVT + E A A+
Sbjct: 109 KSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAI 168
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
++ + E GR ++ + +A++ ++ N+ L++ T
Sbjct: 169 EELNNTEFKGRKIKCSTS-----------------QAKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 204 ENFKAPLSARIVFDTPS-GWATGYGFISYLTKEEAE 238
+ + +V D + G+ FI Y + AE
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDKF 146
L V N+ + +A D+ LF + G V D+ I R + G +G+AFV +EA AVD+
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 147 DTLELSGRILRVELAK 162
D + GR + V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDKF 146
L V N+ + +A D+ LF + G V D+ I R + G +G+AFV +EA AVD+
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 147 DTLELSGRILRVELAK 162
D + GR + V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDKF 146
L V N+ + +A D+ LF + G V D+ I R + G +G+AFV +EA AVD+
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 147 DTLELSGRILRVELAK 162
D + GR + V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDKF 146
L V N+ + +A D+ LF + G V D+ I R + G +G+AFV +EA AVD+
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 147 DTLELSGRILRVELAK 162
D + GR + V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAV 143
++KL++ L W + ++ LF G + + +I K G+ KGY FVT + A A+
Sbjct: 72 RRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLAL 131
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
+ + + GR+ +LA A+ IY SN+ + L F+
Sbjct: 132 -REPSKRIDGRVTVTQLAAAGNSGSNTNAADV----AQRKIYVSNVPPDLPGDKLLAHFS 186
Query: 204 ---ENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKIS- 259
E + PL FD +G + G+ Y T E A AA+S K + GR L K++
Sbjct: 187 IYGEIEEGPLG----FDKQTGRSKGFALFVYKTPEGANAAVSEPV-KNVEGRQLNCKLAI 241
Query: 260 EKKVKEAGSEKDEDLDQG 277
K+ G D QG
Sbjct: 242 TDGGKQQGMRGGPDGAQG 259
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 24/205 (11%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRG-KGYAFVTMASGEEAQAAVDK 145
KL+V +P M+ ++ LF + V +V II+ K R +G FV S +EA AV+
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 146 FD---TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
TL + L+V+ A H ++ L + + F
Sbjct: 77 CHNKKTLPGASSPLQVKYAD------------GELERLEHKLFIGMLPKNISEVEVSALF 124
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELM-GRSLFLKI--- 258
++ + +I+ + G F+ Y TKE+A AA+ A++GK M G S+ L +
Sbjct: 125 SK-YGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 183
Query: 259 ---SEKKVKEAGSEKDEDLDQGHDA 280
E++ + A + + + GHD+
Sbjct: 184 DTEKERQARRAQKAQSQASNVGHDS 208
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGR-GKGYAFVTMASGEEAQAAV 143
++ ++ + +P + D+ + F + G V DV +I ++ R KG ++ A+
Sbjct: 201 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI 260
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARH-----VIYASNLAWKVRSTHL 198
L L G+ + V+ ++ K + +Y NL + + +L
Sbjct: 261 ALSGQL-LLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANL 319
Query: 199 REFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGK-ELMGRSL 254
RE F E F ++ D +G G+GF+ + E A+AA S L+GK E+ GR++
Sbjct: 320 REIF-EPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQS-LNGKLEIAGRTI 374
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
KL+V L + + + D F G V + ++I + + KGY FVT AS +EA+ A+ +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 146 FDTLELSGRILRVELAK 162
+ L+GR++ V+ AK
Sbjct: 93 MNEKALNGRVVFVDYAK 109
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
+Y S L+++ LR F +NF + +V D + G+ F+ Y T+EE++ AI
Sbjct: 97 LYVSGLSFRTTEESLRNAF-KNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 244 LDGKELMGRSLFLKISEKK 262
+ GK L GR +F+++++ +
Sbjct: 156 MHGKFLDGRVIFVEVAKPR 174