Miyakogusa Predicted Gene
- Lj2g3v1468350.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1468350.1 Non Characterized Hit- tr|I3SBY2|I3SBY2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=3 SV=1,98.59,2e-33,no
description,Homeodomain-like; Q6BHF3_DEBHA_Q6BHF3;,DNA-directed RNA
polymerase, subunit N/Rpb10; ,CUFF.37211.1
(71 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g034050.1 | DNA-directed RNA polymerase II 8.2 kDa protein... 134 2e-32
Medtr4g075600.1 | DNA-directed RNA polymerase II 8.2 kDa protein... 130 2e-31
Medtr5g034040.1 | DNA-directed RNA polymerase II 8.2 kDa protein... 125 1e-29
>Medtr5g034050.1 | DNA-directed RNA polymerase II 8.2 kDa protein
| HC | chr5:14717086-14713333 | 20130731
Length = 71
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/71 (85%), Positives = 67/71 (94%)
Query: 1 MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLD LQ+DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNT++K + +
Sbjct: 61 NYNTMEKHEAN 71
>Medtr4g075600.1 | DNA-directed RNA polymerase II 8.2 kDa protein
| LC | chr4:28891413-28888810 | 20130731
Length = 147
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/64 (93%), Positives = 62/64 (96%)
Query: 1 MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLD LQ+DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNT 64
NYNT
Sbjct: 61 NYNT 64
>Medtr5g034040.1 | DNA-directed RNA polymerase II 8.2 kDa protein |
LC | chr5:14712702-14705432 | 20130731
Length = 123
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 65/71 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKV+G+KWD YL+LLQS Y+EGDALD+LGLVRYCCRRMLMTHV+LI+KLL
Sbjct: 53 MIIPVRCFTCGKVVGDKWDTYLELLQSGYTEGDALDSLGLVRYCCRRMLMTHVELIDKLL 112
Query: 61 NYNTLDKSDTS 71
NYN L+K +
Sbjct: 113 NYNPLEKHGAN 123