Miyakogusa Predicted Gene

Lj2g3v1467970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1467970.1 Non Characterized Hit- tr|I1QHM6|I1QHM6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,74.6,2e-18,FAMILY NOT NAMED,NULL; seg,NULL,CUFF.37178.1
         (436 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g030900.1 | endoribonuclease E-like protein | HC | chr5:13...   640   0.0  
Medtr2g029030.1 | plant/F7F23-4 protein | HC | chr2:10809552-108...   306   2e-83
Medtr2g029030.2 | plant/F7F23-4 protein | HC | chr2:10809552-108...   185   6e-47
Medtr2g029030.3 | plant/F7F23-4 protein | HC | chr2:10809552-108...   185   6e-47

>Medtr5g030900.1 | endoribonuclease E-like protein | HC |
           chr5:13225227-13220832 | 20130731
          Length = 422

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/392 (79%), Positives = 339/392 (86%)

Query: 43  FSPSFQNQTPKLVPQNFKPCTLLCGXXXXXXXXXXXXXXVEEQEETEIVKGCTMTQFCDK 102
            +PSFQNQ PKL+ QNFKP  LLC               VEEQ + EIVKG TMTQFCDK
Sbjct: 31  LTPSFQNQKPKLITQNFKPLILLCASFPSPQASSASMAQVEEQADIEIVKGYTMTQFCDK 90

Query: 103 MIDLFLNEKTKSKEWRKYLIFREEWKKYRDSFFSRCQSRADMENDPIIKDKFISLERRVK 162
           MIDLFLNEKTKSKEWRKYL+FR+EWKKYR+SFF RCQ RADMENDP +K+KF SL RRVK
Sbjct: 91  MIDLFLNEKTKSKEWRKYLVFRDEWKKYRNSFFIRCQRRADMENDPTMKEKFTSLGRRVK 150

Query: 163 KIDDEMEGHCNLLKEIQDFPTDINAIVARRRKDFTGEFFRYLSLVADTYDSLEDRDGISR 222
           KIDDEMEGH  LLKEIQDFPTDINAIVARRRKDFTGEFFRYLSL+ADTYDSL+DRDGI+R
Sbjct: 151 KIDDEMEGHYELLKEIQDFPTDINAIVARRRKDFTGEFFRYLSLIADTYDSLDDRDGIAR 210

Query: 223 LGTRCLSAVTAYDNTLENVETLDTAQAKFDDILNSPSIDVACQKIKSLAKAKEXXXXXXX 282
           LG +CLSAV AYDNTL N+ETLD AQAKFDDILNSPSIDVAC+KIKSLAKAKE       
Sbjct: 211 LGAKCLSAVGAYDNTLMNMETLDAAQAKFDDILNSPSIDVACKKIKSLAKAKELDSSLIL 270

Query: 283 XXXXAWANAKESTTMKNEVKDIMYRLYKATKSSLRSITPKEIKLLKHLLNIIDPEERFSA 342
               AWA AKESTTMKNEVK+IMY+LYK TKSSLR+I PKEI+LLKHLLNIIDPEERFSA
Sbjct: 271 LISGAWAKAKESTTMKNEVKEIMYQLYKTTKSSLRTIAPKEIRLLKHLLNIIDPEERFSA 330

Query: 343 LATAFSPGDGHEAKNPDALYTTPKELHKWIQIMLDAYNLNKEETDLREAKQLTDPIVIQR 402
           LATAFSPGD HEAK+P+ALYTTPKELHKWIQIMLDAYNLNKEE+DLREA+Q+TDPIVIQR
Sbjct: 331 LATAFSPGDEHEAKDPNALYTTPKELHKWIQIMLDAYNLNKEESDLREARQMTDPIVIQR 390

Query: 403 LFILRDTIEQEYMEKSGLQKSETDDDSKSEEF 434
           LFIL+DTIE+EYME + + KSET+DDS+SE F
Sbjct: 391 LFILKDTIEKEYMENNTVPKSETEDDSQSEVF 422


>Medtr2g029030.1 | plant/F7F23-4 protein | HC |
           chr2:10809552-10805602 | 20130731
          Length = 403

 Score =  306 bits (785), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 147/360 (40%), Positives = 234/360 (65%), Gaps = 15/360 (4%)

Query: 57  QNFKPCTLLCGXXXXXXXXXXXXXXVEEQEETEIVKGCTMTQFCDKMIDLFLNEKTKSKE 116
           + F+PC  +                 E+   +++V    M   CDK+I +F+ +K+   +
Sbjct: 58  RGFRPCNYVASN--------------EDNASSDVVDESKMIGVCDKLIGVFMVDKSTPTD 103

Query: 117 WRKYLIFREEWKKYRDSFFSRCQSRADMENDPIIKDKFISLERRVKKIDDEMEGHCNLLK 176
           WR+ L F  EW   R  FF+RC  +A  E DP++K+K + L R++K+ID++++ H +LL 
Sbjct: 104 WRRLLAFSREWDNIRPHFFARCNDKAVSETDPVLKEKLLRLARKLKEIDEDVQRHNDLLD 163

Query: 177 EIQDFPTDINAIVARRRKDFTGEFFRYLSLVADTY-DSLEDRDGISRLGTRCLSAVTAYD 235
            I+  P++I+ IV++RRKDFT EFF +L  V  +Y    E ++ +++LG  C +AV AYD
Sbjct: 164 VIRKDPSEISNIVSKRRKDFTNEFFVHLHTVTQSYYKDAEKQNELTKLGEACFAAVQAYD 223

Query: 236 NTLENVETLDTAQAKFDDILNSPSIDVACQKIKSLAKAKEXXXXXXXXXXXAWANAKEST 295
              E++E ++ AQ KF DILNSP++D AC+KI +LA+ KE           AWA AK+S 
Sbjct: 224 GATESIEQINAAQLKFQDILNSPTLDAACRKIDNLAEKKELDSTLVLMITKAWAAAKDSN 283

Query: 296 TMKNEVKDIMYRLYKATKSSLRSITPKEIKLLKHLLNIIDPEERFSALATAFSPGDGHEA 355
             K+EVKDI++ LYK + ++L+ + PKEI+++K++L I DPEE+ SAL  AF+PG+  E 
Sbjct: 284 MTKDEVKDILFHLYKTSVANLQRLVPKEIRIVKYILRIEDPEEQLSALKDAFTPGEELEG 343

Query: 356 KNPDALYTTPKELHKWIQIMLDAYNLNKEETDLREAKQLTDPIVIQRLFILRDTIEQEYM 415
            N D+LYTTP++LH WI+ ++DAY+L+KE T +REA+ L +P +I++L +L+  +E+ +M
Sbjct: 344 NNEDSLYTTPEKLHTWIKTVVDAYHLSKEGTLIREARDLLNPEIIEKLEMLKKVVERNFM 403


>Medtr2g029030.2 | plant/F7F23-4 protein | HC |
           chr2:10809552-10805600 | 20130731
          Length = 290

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 145/245 (59%), Gaps = 15/245 (6%)

Query: 57  QNFKPCTLLCGXXXXXXXXXXXXXXVEEQEETEIVKGCTMTQFCDKMIDLFLNEKTKSKE 116
           + F+PC  +                 E+   +++V    M   CDK+I +F+ +K+   +
Sbjct: 58  RGFRPCNYVASN--------------EDNASSDVVDESKMIGVCDKLIGVFMVDKSTPTD 103

Query: 117 WRKYLIFREEWKKYRDSFFSRCQSRADMENDPIIKDKFISLERRVKKIDDEMEGHCNLLK 176
           WR+ L F  EW   R  FF+RC  +A  E DP++K+K + L R++K+ID++++ H +LL 
Sbjct: 104 WRRLLAFSREWDNIRPHFFARCNDKAVSETDPVLKEKLLRLARKLKEIDEDVQRHNDLLD 163

Query: 177 EIQDFPTDINAIVARRRKDFTGEFFRYLSLVADT-YDSLEDRDGISRLGTRCLSAVTAYD 235
            I+  P++I+ IV++RRKDFT EFF +L  V  + Y   E ++ +++LG  C +AV AYD
Sbjct: 164 VIRKDPSEISNIVSKRRKDFTNEFFVHLHTVTQSYYKDAEKQNELTKLGEACFAAVQAYD 223

Query: 236 NTLENVETLDTAQAKFDDILNSPSIDVACQKIKSLAKAKEXXXXXXXXXXXAWANAKEST 295
              E++E ++ AQ KF DILNSP++D AC+KI +LA+ KE           AWA AK+S 
Sbjct: 224 GATESIEQINAAQLKFQDILNSPTLDAACRKIDNLAEKKELDSTLVLMITKAWAAAKDSN 283

Query: 296 TMKNE 300
             K+E
Sbjct: 284 MTKDE 288


>Medtr2g029030.3 | plant/F7F23-4 protein | HC |
           chr2:10809552-10806697 | 20130731
          Length = 290

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 145/245 (59%), Gaps = 15/245 (6%)

Query: 57  QNFKPCTLLCGXXXXXXXXXXXXXXVEEQEETEIVKGCTMTQFCDKMIDLFLNEKTKSKE 116
           + F+PC  +                 E+   +++V    M   CDK+I +F+ +K+   +
Sbjct: 58  RGFRPCNYVASN--------------EDNASSDVVDESKMIGVCDKLIGVFMVDKSTPTD 103

Query: 117 WRKYLIFREEWKKYRDSFFSRCQSRADMENDPIIKDKFISLERRVKKIDDEMEGHCNLLK 176
           WR+ L F  EW   R  FF+RC  +A  E DP++K+K + L R++K+ID++++ H +LL 
Sbjct: 104 WRRLLAFSREWDNIRPHFFARCNDKAVSETDPVLKEKLLRLARKLKEIDEDVQRHNDLLD 163

Query: 177 EIQDFPTDINAIVARRRKDFTGEFFRYLSLVADT-YDSLEDRDGISRLGTRCLSAVTAYD 235
            I+  P++I+ IV++RRKDFT EFF +L  V  + Y   E ++ +++LG  C +AV AYD
Sbjct: 164 VIRKDPSEISNIVSKRRKDFTNEFFVHLHTVTQSYYKDAEKQNELTKLGEACFAAVQAYD 223

Query: 236 NTLENVETLDTAQAKFDDILNSPSIDVACQKIKSLAKAKEXXXXXXXXXXXAWANAKEST 295
              E++E ++ AQ KF DILNSP++D AC+KI +LA+ KE           AWA AK+S 
Sbjct: 224 GATESIEQINAAQLKFQDILNSPTLDAACRKIDNLAEKKELDSTLVLMITKAWAAAKDSN 283

Query: 296 TMKNE 300
             K+E
Sbjct: 284 MTKDE 288