Miyakogusa Predicted Gene

Lj2g3v1457490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1457490.1 tr|D2V8Z4|D2V8Z4_NAEGR Predicted protein
OS=Naegleria gruberi GN=NAEGRDRAFT_31998 PE=4 SV=1,42.7,2e-16,23S RRNA
METHYLTRANSFERASE,NULL; RNA METHYLTRANSFERASE,NULL; seg,NULL; no
description,NULL,CUFF.37160.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g099300.1 | tRNA/rRNA methyltransferase SpoU family protei...   268   3e-72

>Medtr4g099300.1 | tRNA/rRNA methyltransferase SpoU family protein |
            HC | chr4:41173123-41201425 | 20130731
          Length = 1837

 Score =  268 bits (684), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 150/192 (78%), Gaps = 1/192 (0%)

Query: 1    MEQVLKFLNDVREDLRCSMAKDVVTLRNETLKSYGDTNCMKNVSGDTEGIVLKDMSSDFQ 60
            MEQVLKFLND REDLRCSMAKDVVT+RNETLK  GD +CM+ +SG +E  + KDMSSDFQ
Sbjct: 1569 MEQVLKFLNDAREDLRCSMAKDVVTIRNETLKFNGD-DCMEKLSGGSEAALFKDMSSDFQ 1627

Query: 61   KKVTLAKHNKGDNEAGFLYSNDETYRKMAEIEXXXXXXXXXXXXXXXXXXXXXASRQNCI 120
            KK+T  KH+ GDN+AG    +DETYRKMAEIE                     ASRQ+ I
Sbjct: 1628 KKITFTKHDAGDNDAGLCCDDDETYRKMAEIERDDLLLDQVLQSRRSSLDQQKASRQSFI 1687

Query: 121  LAASLLDRIPNLAGLARSCEVFGASGLAIADKNIISDKQFQLISVTAEKWVPIIELPVDS 180
            L ASL+DRIPNLAGLAR+CEVF ASGLAIAD NII+DKQFQLISVTAEKWVPIIE+PVDS
Sbjct: 1688 LVASLIDRIPNLAGLARTCEVFKASGLAIADTNIINDKQFQLISVTAEKWVPIIEVPVDS 1747

Query: 181  IKAYLQKKKREG 192
            IK YLQKKKREG
Sbjct: 1748 IKTYLQKKKREG 1759