Miyakogusa Predicted Gene
- Lj2g3v1455300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1455300.1 Non Characterized Hit- tr|I1K9J2|I1K9J2_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max GN=G,31.05,2e-18,no
description,NULL; KH_TYPE_1,K Homology domain, type 1; Eukaryotic type
KH-domain (KH-domain type ,CUFF.37133.1
(623 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 780 0.0
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 297 2e-80
Medtr5g049770.1 | RNA-binding KH domain protein | HC | chr5:2176... 231 2e-60
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 192 6e-49
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 192 6e-49
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 183 5e-46
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 165 1e-40
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 159 6e-39
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 147 2e-35
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 142 9e-34
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 134 3e-31
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 134 4e-31
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 134 4e-31
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 134 4e-31
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 124 2e-28
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 124 2e-28
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 114 4e-25
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 85 3e-16
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 84 4e-16
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 81 3e-15
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 79 1e-14
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 79 1e-14
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 79 1e-14
Medtr5g031580.1 | RNA-binding KH domain protein, putative | HC |... 79 1e-14
Medtr5g031530.1 | RNA-binding KH domain protein | HC | chr5:1353... 76 1e-13
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 75 2e-13
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 69 1e-11
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 69 1e-11
Medtr5g031500.1 | hypothetical protein | LC | chr5:13518708-1351... 67 5e-11
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 66 1e-10
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 62 2e-09
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 62 2e-09
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 55 2e-07
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 55 2e-07
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/611 (65%), Positives = 464/611 (75%), Gaps = 17/611 (2%)
Query: 15 MQDPTSPAAAEPEXXXXXXXXXXRSPRPSSSKRNYKSKRPVFKILPGQIVFRLVCHAXXX 74
MQDPT AA E P+P KRN + KRPVFK+LPGQI FRLVCH+
Sbjct: 1 MQDPTFSAAVE--------TTDHHHPQPPL-KRNNR-KRPVFKLLPGQIAFRLVCHSSTV 50
Query: 75 XXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGVALEDGEVEVSNA 134
QLRRETGCKIHCEDAV GTDDRVIL+IGS+ RKG+ L D E+EVSNA
Sbjct: 51 GGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKGIVLGDREMEVSNA 110
Query: 135 QEASVRVFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTK 194
QE VRVF+RVW LE+EKG N EV KLLAH+SQ+GA+VGKGGKNIS IR+N+ +
Sbjct: 111 QEGVVRVFDRVWGLESEKGGN----GEVYGKLLAHSSQVGAIVGKGGKNISNIRNNSGSN 166
Query: 195 IRVCPSPPCAAKDEELVLITGESLGVKKALVSVSHCLQDCPPLAKAXXXXXXXXXXXXXX 254
IRVCP+P CAAKDEEL+LITGESL VKKAL+ VS+CLQDCPP+ K
Sbjct: 167 IRVCPAPHCAAKDEELILITGESLAVKKALIYVSYCLQDCPPMGKVSLNTPPTINSSDRS 226
Query: 255 XXXXXHDELFPHLNSWLPSMEGLSINDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNV 314
H++LFPHLNSWLPSMEGLSINDAS+QTTN+NGN +LDSKG+ H VVFR+LCSNNV
Sbjct: 227 TSYT-HEDLFPHLNSWLPSMEGLSINDASKQTTNANGNSSLDSKGSGHAVVFRLLCSNNV 285
Query: 315 AGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVF 374
AGSVIGK+G+IVR E +TGASI+FA P+ + ERIVT+SA ENL SS SPAQDAVILVF
Sbjct: 286 AGSVIGKKGSIVRTFEIRTGASIVFAPPLGQYEERIVTISAFENLESSNSPAQDAVILVF 345
Query: 375 ARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHG 434
RI EDHI GF PA++VESPVT RLL+ +S+++ L GNEGQVISEL++ + ADIQ+LHG
Sbjct: 346 TRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISELRQVSGADIQLLHG 405
Query: 435 EPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLAEARTNSNFQVNKDIAE 494
EP+P ASDNDVVVQITGGYRCV+NAL KITS IRDN NE+LAEA+ +F +NKD
Sbjct: 406 EPIPNASDNDVVVQITGGYRCVENALRKITSIIRDNPLTNELLAEAKIKPSFPLNKDTVR 465
Query: 495 GNFSAHGKSAFPLGRFMRQNAGGHGGSN-SENGVLHTDLSENSERGRGNMLATVTNTTVE 553
F KS+FP R QNAG + +ENG HT+L EN E GRGN++ATVTNTTVE
Sbjct: 466 SKFITRKKSSFPFARVPPQNAGVYQAKKVTENGESHTNLIENVEPGRGNIVATVTNTTVE 525
Query: 554 IVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSA-GTSQGKVVISGTPDQTFAAQSL 612
I+VSEHVF SVYGEDGGN+DRIRQISGA VTV+DPS+ GTS GKVVISGTPDQTFAAQSL
Sbjct: 526 IIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSL 585
Query: 613 LQAFIQSGQVS 623
LQAFIQ+ Q S
Sbjct: 586 LQAFIQTAQAS 596
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 221/619 (35%), Positives = 332/619 (53%), Gaps = 71/619 (11%)
Query: 56 FKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGS 115
FK G +VFRL+CHA L++ TG +I +DA +RVI++I +
Sbjct: 13 FKRNNGHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVN 72
Query: 116 LWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVV-CKLLAHTSQIG 174
L DG+V + N QEA ++VFER+ ++ A + + VV C+LL + Q G
Sbjct: 73 LN-------GDGDVSL-NPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAG 124
Query: 175 ALVGKGGKNISTIRSNTCTKIRVCPS--PPCAAKDEELVLITGESLGVKKALVSVSHCLQ 232
++GKGG ++ IR++T +IRV P C +E++ I G + VKKALV+V+ LQ
Sbjct: 125 GVIGKGGMVVAKIRADTGCRIRVLNDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQ 184
Query: 233 DCPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPSMEGLSINDASRQT------ 286
DCPPL + H+ L LN +I+ +S ++
Sbjct: 185 DCPPLDRTKMMGTRPYEAFQNETSAVPHEGL-TDLNMDFRLQRSSAISTSSIRSNGVPSK 243
Query: 287 -----TNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAA 341
N +LD + + +V FRILCS + G+V+GK G+IV+AL+N+TGA+I
Sbjct: 244 SHPLSVEDNRVSSLDPEALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGP 303
Query: 342 PINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLL 401
P+ +R++T++A+EN S +SPAQ+AV+LVF R IE I K S+ ES VT +L+
Sbjct: 304 PVVECEDRLITITALENPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLV 363
Query: 402 VASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNAL 460
V S+ V L G G ++SE++++T I+I VP AS ND VVQI+G V++AL
Sbjct: 364 VPSNQVGVLLGKGGAIVSEMRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDAL 423
Query: 461 HKITSRIRDNLYPNEVLAEARTNSN-FQVNKD---IAEGNFSA----HGKSAFPLGRFM- 511
+ T R+RD+++ ++A+ + ++ +D + G S HG S L + M
Sbjct: 424 YNATRRLRDHIF---LIAQNSGGTGPYRRPRDSIPLGLGGQSVVGSNHGPSIHSLSQSMD 480
Query: 512 ----RQNAGGH-----------GGSNSENGVLHTD--------------LSENSERGRGN 542
+N+G GG NS +TD L+ S GN
Sbjct: 481 HLTLSRNSGRSASSGVWAPKVVGGKNSR----YTDDAGRRLNPREGDLELASGSNTVIGN 536
Query: 543 MLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTS-QGKVVISG 601
A +TNTTVEI++ + SVYGE+G N+D++RQISGA V ++P GTS + K+V+SG
Sbjct: 537 A-AIITNTTVEIMLPNDIIGSVYGENGSNLDQLRQISGAKVVFHEPRPGTSDRAKIVLSG 595
Query: 602 TPDQTFAAQSLLQAFIQSG 620
TPD+T AAQSLLQA+I +G
Sbjct: 596 TPDETQAAQSLLQAYILNG 614
>Medtr5g049770.1 | RNA-binding KH domain protein | HC |
chr5:21769759-21766560 | 20130731
Length = 241
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/215 (59%), Positives = 157/215 (73%), Gaps = 6/215 (2%)
Query: 404 SSSVNCLNGNEGQVISELKESTRADIQILHGEPVP-TASDNDVVVQITGGYRCVQNALHK 462
SS V + G G+ IS ++ ++ ++I++ P P A+ ++ ++ ITGGYRC++NAL K
Sbjct: 28 SSQVGAIVGKGGKNISNIRNNSGSNIRVC---PAPHCAAKDEELILITGGYRCIENALRK 84
Query: 463 ITSRIRDNLYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGGSN 522
ITS IR+N NEVLAEAR +F +NKD F KS+FP R QNAG +
Sbjct: 85 ITSIIRNNPLTNEVLAEARIKPSFPLNKDTVRSKFITRKKSSFPFARVPPQNAGVYQAKK 144
Query: 523 -SENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGA 581
+ENG HT+L EN E GRGN++ATVTNTTVEI+VSEHVF SVYGEDGGN+DRIRQISGA
Sbjct: 145 VTENGESHTNLIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGA 204
Query: 582 SVTVYDPSA-GTSQGKVVISGTPDQTFAAQSLLQA 615
VTV+DPS+ GTS GKVVISGTPDQTFAAQSLLQA
Sbjct: 205 DVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQA 239
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 54/68 (79%)
Query: 168 AHTSQIGALVGKGGKNISTIRSNTCTKIRVCPSPPCAAKDEELVLITGESLGVKKALVSV 227
AH+SQ+GA+VGKGGKNIS IR+N+ + IRVCP+P CAAKDEEL+LITG ++ AL +
Sbjct: 26 AHSSQVGAIVGKGGKNISNIRNNSGSNIRVCPAPHCAAKDEELILITGGYRCIENALRKI 85
Query: 228 SHCLQDCP 235
+ +++ P
Sbjct: 86 TSIIRNNP 93
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 185/673 (27%), Positives = 296/673 (43%), Gaps = 109/673 (16%)
Query: 38 RSPRPSSSKRNYKSKRP--VFKIL--PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETG 93
+ P+ S S R K ++P VF L +VFRL+C A Q+R ETG
Sbjct: 3 KRPKKSESNRRPKRRKPSGVFSPLDVSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETG 62
Query: 94 CKIHCEDAVPGTDDRVILII-----GSLWPRK---------------------------- 120
K+ E+ VPG ++RVI + GS K
Sbjct: 63 VKVKIEEPVPGCEERVITFLKESEEGSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKD 122
Query: 121 GVALEDGEVEVSNAQEASVR----VFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGAL 176
V++ED + E N+ +R VFERV E ++G + + +LL ++Q+G +
Sbjct: 123 SVSVEDSQSEKVNSNPTIMRAVMLVFERVAE---DEGGDESKKGYFGLRLLILSNQVGCI 179
Query: 177 VGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKALVSVSHCLQD 233
+GKGG I + + + +IR+ P P CA+ +ELV ITG V++AL SV L +
Sbjct: 180 LGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVE 239
Query: 234 CPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPS--MEGLSINDASRQTTNSNG 291
P + F + + E + A G
Sbjct: 240 NSPRDHESLPTNLTGPSSHSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEG 299
Query: 292 NFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIV 351
+ + FR+LC + G++IGK G+I++ L+ +T + I I + I+
Sbjct: 300 AILGRMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCII 359
Query: 352 TVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLN 411
+S + SP Q+A+ V ++ I + L S E + R++V+S + CL
Sbjct: 360 IISGPAHPDDRISPVQEAIFRV-----QNRISRAML--DSKEHSMLARVIVSSKHIGCLL 412
Query: 412 GNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDN 470
G G +I+E++ + A I++L + P S++D V+Q++G V +AL +IT+R+R+N
Sbjct: 413 GKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNN 472
Query: 471 LYPNEVLAEARTNSNFQVNKDIAE-----------------GNFS----AHGKSAFPLGR 509
+ +A ++NF N + G +S H + FPL
Sbjct: 473 FF-----RDAFPSANFPSNSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDD 527
Query: 510 ---FM--------------RQNAGGHGGSNSENGVLHTDLSENSERGR------GNMLAT 546
FM R+ G G G H L E + R G
Sbjct: 528 HPPFMNNMYRSGIPPLISERKPWGPKG---ILEGGGHMGLPEFAGGPRRISGFAGGSQPI 584
Query: 547 VTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQT 606
+T+TTVE+VV + + +YGE+G + +I QIS A+V + DP G + K++ISGTP+QT
Sbjct: 585 ITSTTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQT 644
Query: 607 FAAQSLLQAFIQS 619
AAQSL+QAF+ S
Sbjct: 645 NAAQSLIQAFVMS 657
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 185/673 (27%), Positives = 296/673 (43%), Gaps = 109/673 (16%)
Query: 38 RSPRPSSSKRNYKSKRP--VFKIL--PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETG 93
+ P+ S S R K ++P VF L +VFRL+C A Q+R ETG
Sbjct: 3 KRPKKSESNRRPKRRKPSGVFSPLDVSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETG 62
Query: 94 CKIHCEDAVPGTDDRVILII-----GSLWPRK---------------------------- 120
K+ E+ VPG ++RVI + GS K
Sbjct: 63 VKVKIEEPVPGCEERVITFLKESEEGSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKD 122
Query: 121 GVALEDGEVEVSNAQEASVR----VFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGAL 176
V++ED + E N+ +R VFERV E ++G + + +LL ++Q+G +
Sbjct: 123 SVSVEDSQSEKVNSNPTIMRAVMLVFERVAE---DEGGDESKKGYFGLRLLILSNQVGCI 179
Query: 177 VGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKALVSVSHCLQD 233
+GKGG I + + + +IR+ P P CA+ +ELV ITG V++AL SV L +
Sbjct: 180 LGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVE 239
Query: 234 CPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPS--MEGLSINDASRQTTNSNG 291
P + F + + E + A G
Sbjct: 240 NSPRDHESLPTNLTGPSSHSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEG 299
Query: 292 NFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIV 351
+ + FR+LC + G++IGK G+I++ L+ +T + I I + I+
Sbjct: 300 AILGRMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCII 359
Query: 352 TVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLN 411
+S + SP Q+A+ V ++ I + L S E + R++V+S + CL
Sbjct: 360 IISGPAHPDDRISPVQEAIFRV-----QNRISRAML--DSKEHSMLARVIVSSKHIGCLL 412
Query: 412 GNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDN 470
G G +I+E++ + A I++L + P S++D V+Q++G V +AL +IT+R+R+N
Sbjct: 413 GKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNN 472
Query: 471 LYPNEVLAEARTNSNFQVNKDIAE-----------------GNFS----AHGKSAFPLGR 509
+ +A ++NF N + G +S H + FPL
Sbjct: 473 FF-----RDAFPSANFPSNSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDD 527
Query: 510 ---FM--------------RQNAGGHGGSNSENGVLHTDLSENSERGR------GNMLAT 546
FM R+ G G G H L E + R G
Sbjct: 528 HPPFMNNMYRSGIPPLISERKPWGPKG---ILEGGGHMGLPEFAGGPRRISGFAGGSQPI 584
Query: 547 VTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQT 606
+T+TTVE+VV + + +YGE+G + +I QIS A+V + DP G + K++ISGTP+QT
Sbjct: 585 ITSTTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQT 644
Query: 607 FAAQSLLQAFIQS 619
AAQSL+QAF+ S
Sbjct: 645 NAAQSLIQAFVMS 657
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 180/343 (52%), Gaps = 30/343 (8%)
Query: 135 QEASVRVFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTK 194
Q A +RVFER+ E + + N+ NS V C+LLA + Q+G ++G+GGK + IR + +
Sbjct: 72 QLALIRVFERIVEKDNNEENNKKSNSSVGCRLLAPSYQVGCVLGRGGKIVEKIRQESGAQ 131
Query: 195 IRVCPS--PPCAAKDEELVLITGESLGVKKALVSVSHCLQDCPPLAKAXXXXXXXXXXXX 252
+R+ P P +E + ITG VKKAL++VS CLQD
Sbjct: 132 VRILPKDHSPIPPPGDEFIQITGNFNAVKKALLAVSSCLQD------------NVGNSGG 179
Query: 253 XXXXXXXHDELFPHLNSWLPSME--GLSINDASRQTTNSNGNFNLDSKGAEHQVVFRILC 310
E +P P G S S ++ F E +VV+++LC
Sbjct: 180 FKSSGGAQVEPYPQRGPHPPDHHSRGYSSFPGSENARPAHRMF------VEEEVVYKMLC 233
Query: 311 SNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAV 370
+ GS+IGK G++VRAL+N+TGASI + ER+V +SA+EN +SPAQDAV
Sbjct: 234 QQDKVGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVISALENSDQKHSPAQDAV 293
Query: 371 ILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQ 430
I V R+ E GF +++ V RLLV S V CL G G VISE++ T A+I+
Sbjct: 294 IRVHGRLTE----IGFEHSNA----VVARLLVRSPQVGCLLGKGGHVISEMRRVTGANIR 345
Query: 431 ILHGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNLYP 473
I E + S N+ VVQ+ G + VQ+AL ITSRIR+ + P
Sbjct: 346 IFSKEQIKYISHNEEVVQVIGTLQSVQDALFHITSRIRETIIP 388
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 541 GNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVIS 600
GN L N+ VEI + VYGE+ +++IRQISGA+V ++DP G ++G V++S
Sbjct: 522 GNSLQNPNNSPVEITIPHMYLIHVYGENNSTLNQIRQISGANVVIHDPIPGATEGLVIVS 581
Query: 601 GTPDQTFAAQSLLQAFIQSG 620
GT DQ +AQ L+Q FI G
Sbjct: 582 GTQDQIHSAQCLIQGFIFCG 601
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 38 RSPRPSSSK-RNYKS------KRPVFKIL-PGQIVFRLVCHAXXXXXXXXXXXXXXXQLR 89
R P P R Y S RP ++ ++V++++C L+
Sbjct: 194 RGPHPPDHHSRGYSSFPGSENARPAHRMFVEEEVVYKMLCQQDKVGSLIGKGGSVVRALQ 253
Query: 90 RETGCKIHCEDAVPGTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELE 149
ETG I DA P +D+RV++I ALE+ + + S AQ+A +RV R+ E+
Sbjct: 254 NETGASIQIVDAGPDSDERVVVI---------SALENSDQKHSPAQDAVIRVHGRLTEIG 304
Query: 150 AEKGVNRTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPSPPCA--AKD 207
E ++ VV +LL + Q+G L+GKGG IS +R T IR+ + +
Sbjct: 305 FEH------SNAVVARLLVRSPQVGCLLGKGGHVISEMRRVTGANIRIFSKEQIKYISHN 358
Query: 208 EELVLITGESLGVKKALVSVS 228
EE+V + G V+ AL ++
Sbjct: 359 EEVVQVIGTLQSVQDALFHIT 379
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 305 VFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYS 364
VFRILC + S++ G V+ L + FA + + ERIV + + S+
Sbjct: 19 VFRILCPAAKSDSLLSLSGDGVKILIDD------FAGDVTSSDERIVVIISAAAEESA-- 70
Query: 365 PAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKES 424
AQ A+I VF RI+E + S V RLL S V C+ G G+++ ++++
Sbjct: 71 -AQLALIRVFERIVEKDNNEEN--NKKSNSSVGCRLLAPSYQVGCVLGRGGKIVEKIRQE 127
Query: 425 TRADIQILHGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNL 471
+ A ++IL + P D +QITG + V+ AL ++S ++DN+
Sbjct: 128 SGAQVRILPKDHSPIPPPGDEFIQITGNFNAVKKALLAVSSCLQDNV 174
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 150/600 (25%), Positives = 273/600 (45%), Gaps = 65/600 (10%)
Query: 65 FRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGVAL 124
+RL+CH +R+ TG I+ + V G ++R+I I S R+
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEI--SDTRRRD--- 119
Query: 125 EDGEV-EVSNAQEASVRVFERVWE----LEAEKGVNRTIN---SEVVCKLLAHTSQIGAL 176
DG + + S AQEA + + ER+ E E E+ V +L+ +G+L
Sbjct: 120 PDGRMPQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSL 179
Query: 177 VGKGGKNISTIRSNTCTKIRVCPS----PPCAAKDEELVLITGESLGVKKALVSVSHCLQ 232
+GKGGK I +R T T+IR+ P P C + EE+V +TG+ VK A + +S L+
Sbjct: 180 LGKGGKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLR 239
Query: 233 DCPPLAKAXXXXXXXXXXXXXXXXXXX----HDELFPHLN--SWLPSME--GLSINDASR 284
+ ++ D+ PH++ S PS+E G A+
Sbjct: 240 ESQHRDRSGERGGGGGQFHGRGHSPERFFPPDDDYLPHVSSGSRRPSVERSGFGSRIATT 299
Query: 285 QTTNSNG---NFNLDSKGAE---------HQVVFRILCSNNVAGSVIGKRGAIVRALENK 332
+ N+N ++++D A ++FRILC + ++G+ G I+ L+++
Sbjct: 300 NSRNNNHASISYSMDQGAAPVAHDEQPFYEDLIFRILCPVDRVDRIVGESGGILELLQDR 359
Query: 333 TGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSV 392
G + + + E++V +++ E + PAQ+A++ + I++
Sbjct: 360 VGVDVQISDRVGGSDEQMVIITSEEGPNDTMFPAQEALLHIQTHIVD-----------LS 408
Query: 393 ESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTA-SDNDVVVQITG 451
+S +T RL+V SS + CL+G +SE++ ST A +QIL E +P ++ D +VQI G
Sbjct: 409 DSIITTRLIVPSSDIECLDGKNAS-LSEIERSTGASVQILPREELPPCIANTDELVQIVG 467
Query: 452 GYRCVQNALHKITSRIRDNLY----------PNEVLAEARTNSNFQVNKDIAEGNFSAHG 501
+N + +T+++R +Y P+ L +S+ + +AE +
Sbjct: 468 EIEAARNVILDVTAKLRSYVYRDILQWDTVPPSAPLPSVEASSSNSMAT-VAETATANQN 526
Query: 502 KSAFPLGRFMRQNAGGHGGSNSENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVF 561
+ + +++ GGS +D ++ G ++ VT + +E+V+ E+
Sbjct: 527 MQSVAVALASKES----GGSTEMGKQKESDRRDDLPTGLNRTVSLVTRSILEVVIPEYAV 582
Query: 562 SSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFIQSGQ 621
+ + + +I ++SGA+V + + + + ISGTP+Q QSLLQ FI S Q
Sbjct: 583 PKLLAKSKSKLAQISELSGANVKLVEDRPDEKEKIIQISGTPEQAERGQSLLQGFILSTQ 642
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 156/601 (25%), Positives = 273/601 (45%), Gaps = 56/601 (9%)
Query: 63 IVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGV 122
I +R++C +R+E+ K+ D PG RVI I + ++ +
Sbjct: 42 IAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEI 101
Query: 123 ALED---GEVEVSNAQEASVRVFERVW-ELEAEKGVNRTINSEVVCKLLAHTSQIGALVG 178
+ED E + AQ+A ++V + +E + ++ C++L +SQ L+G
Sbjct: 102 EIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPSSQSAILIG 161
Query: 179 KGGKNISTIRSNTCTKIRVCPSPP------CAAKDEELVLITGESLGVKKALVSVSHCL- 231
K G I +R T T I+V P CA + + VL+ GES VK+AL +VS +
Sbjct: 162 KAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLV-GESEAVKRALFAVSTIMY 220
Query: 232 -----QDCP-----PLAKAXXXXXXXXXXXXXXXXXXXHDEL-----FPHL--NSWLPSM 274
+D P P D + FP L + + +
Sbjct: 221 KFSPKEDIPLDTTVPETPHSIIIPSELPIYPPGGLYPASDPIVQPRSFPQLIGATTMQDL 280
Query: 275 EGLSINDASRQTTNSNGNFNLDSKGAEH--QVVFRILCSNNVAGSVIGKRGAIVRALENK 332
G + + S+ + S GA +++ R+LC ++ G +IGK G ++ +
Sbjct: 281 HGGYADTGNTWPLYSSPLPVVSSLGASQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQA 340
Query: 333 TGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSV 392
+GA I E ++T++A E+ S A +AV+L+ +I ++
Sbjct: 341 SGARIEVDDSKARHDECLITITATESTSDLKSVAVEAVLLLQEKINDED----------- 389
Query: 393 ESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTASDNDVVVQITGG 452
++PV++RLLV S + C+ G G +I+E+++ T+ADIQI A DND +V++ G
Sbjct: 390 DAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQISRSNKPKYADDNDELVEVVGE 449
Query: 453 YRCVQNALHKITSRIRDNLYPNEVLAEAR---TNSNFQVNKDI-AEGNFSAHGKSAFPLG 508
CV++AL +I R+R+++ N+ + R + S + + + A S+ +A L
Sbjct: 450 VDCVRDALIQIVLRLREDVLKNKDIDHNRHIGSESLYASSSVLSAPPMLSSIPATAPALA 509
Query: 509 RFMRQNAGGHGGSNSENGVLHTDLSENSERGRGNMLATVTN----------TTVEIVVSE 558
R +G G +S D + G G+M + TN +T+E+VV
Sbjct: 510 YDQRTGSGTGLGMHSSRSHYGYDSYSMEDNGYGSMSSYATNLYEGHRLPPLSTLEMVVPA 569
Query: 559 HVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFIQ 618
+ V G+ G N+ IR+ISGA+V + + + +ISGT ++ AA++L+QAFI
Sbjct: 570 NAVGKVMGKGGANLANIRKISGATVEISESKSYRGDRVALISGTSEEKRAAENLIQAFIM 629
Query: 619 S 619
+
Sbjct: 630 A 630
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 135/349 (38%), Gaps = 60/349 (17%)
Query: 296 DSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSA 355
D + + +RILC N V GSVIGK G ++ ++ ++ A + P R++T+
Sbjct: 34 DERDKGELIAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFC 93
Query: 356 -IENLGSSYS-----------PAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVA 403
++N AQDA+I V + I + I ++ ++LV
Sbjct: 94 HVKNKEEIEIEDEFDNEKPLCAAQDALIKVHS-AISNSIETAGDSEKKRKNKDECQILVP 152
Query: 404 SSSVNCLNGNEGQVISELKESTRADIQILHGEPV-PTAS-----DNDVVVQITGGYRCVQ 457
SS L G G I +L+ TR +I+++ + P S DN V+V G V+
Sbjct: 153 SSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLV---GESEAVK 209
Query: 458 NALHKITSRIRDNLYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPL----GRF--- 510
AL +++ I P E + ++ + E S S P+ G +
Sbjct: 210 RALFAVST-IMYKFSPKE---------DIPLDTTVPETPHSIIIPSELPIYPPGGLYPAS 259
Query: 511 -----------------MRQNAGGHGGSNSENGVLHTDLSENSERGRGNMLATVTNTTVE 553
M+ GG+ + + + + L S G + V
Sbjct: 260 DPIVQPRSFPQLIGATTMQDLHGGYADTGNTWPLYSSPLPVVSSLG----ASQSEELIVR 315
Query: 554 IVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGT 602
++ + G+ GG + R+RQ SGA + V D A + + I+ T
Sbjct: 316 MLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITAT 364
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 128/201 (63%), Gaps = 2/201 (0%)
Query: 294 NLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV 353
+L+ K + ++ F+I+CSN+ G VIGK G I+RAL+++TGA++ + +R++T+
Sbjct: 321 SLEPKAHQQEITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITI 380
Query: 354 SAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGN 413
+A E+ S YSPAQ A +LVF+R +E I KG + S VT +L+V+S+ V CL G
Sbjct: 381 TASESPESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGK 440
Query: 414 EGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLY 472
G ++SE++++T A I+I+ + V ASDND VVQI+G + VQ+AL+ T R+RDNL+
Sbjct: 441 GGVIVSEMRKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLF 500
Query: 473 PNEVLAEARTNSNFQVNKDIA 493
L A T S V D +
Sbjct: 501 -GGTLKSAGTRSLSSVQSDTS 520
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 112/204 (54%), Gaps = 10/204 (4%)
Query: 40 PRPSSSKRNYKSKRPVFKILP---GQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKI 96
P P+ S + K +P + LP G + FRL+C++ L+ TG KI
Sbjct: 22 PFPNGSSKRAKPSKPPQQPLPIPAGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKI 81
Query: 97 HCEDAVPGTDDRVILIIGSLWPRKGVALE----DGE-VEVSNAQEASVRVFERVWELEAE 151
ED+ + DRVI++IG+ V + DGE +EVS AQEA +RVF+R+ E+ AE
Sbjct: 82 RIEDSPNESPDRVIMVIGASNIDGKVMVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAE 141
Query: 152 KGVNRTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS--PPCAAKDEE 209
+ V C+L+A ++Q G+++GKGGK + I+ +T KI VC P C + +E
Sbjct: 142 MEGIELGDRTVSCRLVADSAQAGSVIGKGGKVVEKIKKDTGCKIWVCKDNLPACISSPDE 201
Query: 210 LVLITGESLGVKKALVSVSHCLQD 233
++ I G VKKALV+VS LQD
Sbjct: 202 VIEIEGSVSSVKKALVAVSRNLQD 225
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 164/354 (46%), Gaps = 49/354 (13%)
Query: 304 VVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSY 363
V +++ S+N G ++GK G IV + TGASI + ++ + + +
Sbjct: 423 VTAQLVVSSNQVGCLLGKGGVIVSEMRKATGASIRIVG-TDKVSKCASDNDQVVQISGEF 481
Query: 364 SPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKE 423
S QDA+ R+ D++ G L ++ S +V+ +S L S L+
Sbjct: 482 SNVQDALYNATGRL-RDNLFGGTLKSAGTRSLSSVQ--SDTSPYGRLRDVPLGSQSSLRA 538
Query: 424 STRADIQI----------LHGEPVPTASDNDVVVQITGGYRCVQNALHKITS---RIRDN 470
T A +++ L + P DV + GG Q++L TS R+RD
Sbjct: 539 DTNAFVRLRDVPLVGQSSLQADTSPYVRLRDVSL---GG----QSSLQSDTSPYGRLRDI 591
Query: 471 LYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSA-------------FPLGR-FMRQNAG 516
+ ++ T S + +DI G SA G S F LGR + R ++
Sbjct: 592 PLGGQSSLQSDT-SPYGKLRDIPLGGQSAVGISHSLSRHTFSQGIDHFSLGRNYDRPSSP 650
Query: 517 G----------HGGSNSENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYG 566
G + GS +E T E G+ A VTNTT+EIVV E VYG
Sbjct: 651 GLWTPPRVTGMNSGSINEASWGSTSRKGGLELVSGSKSAIVTNTTIEIVVPEDTLYLVYG 710
Query: 567 EDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFIQSG 620
E+G N+ R+RQISGA V +++P GTS +V+SG+PD+T AAQSLLQAFI +G
Sbjct: 711 ENGSNLARLRQISGAKVVIHEPRPGTSDRTIVLSGSPDETQAAQSLLQAFILNG 764
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 62 QIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKG 121
+I F+++C L+ ETG + +V +DR+I I S P
Sbjct: 330 EITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESP--- 386
Query: 122 VALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTIN--SEVVCKLLAHTSQIGALVGK 179
E S AQ+A+V VF R E EKG++ +N S V +L+ ++Q+G L+GK
Sbjct: 387 ------ESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGK 440
Query: 180 GGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKALVSVSHCLQD 233
GG +S +R T IR+ + CA+ ++++V I+GE V+ AL + + L+D
Sbjct: 441 GGVIVSEMRKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRD 497
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 303 QVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSS 362
V FR+LC+++ G VIGK G +++ L+ TGA I N +R++ V N+
Sbjct: 47 HVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGK 106
Query: 363 --------------YSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVN 408
S AQ+A++ VF RI+E + + V+ RL+ S+
Sbjct: 107 VMVRSHSGDGEAIEVSKAQEALLRVFDRILE--VAAEMEGIELGDRTVSCRLVADSAQAG 164
Query: 409 CLNGNEGQVISELKESTRADIQILHGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIR 468
+ G G+V+ ++K+ T I + S D V++I G V+ AL ++ ++
Sbjct: 165 SVIGKGGKVVEKIKKDTGCKIWVCKDNLPACISSPDEVIEIEGSVSSVKKALVAVSRNLQ 224
Query: 469 D 469
D
Sbjct: 225 D 225
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 253/568 (44%), Gaps = 56/568 (9%)
Query: 63 IVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGV 122
I +R++C +R+E+ K+ D PG RVI I + ++ +
Sbjct: 42 IAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEI 101
Query: 123 ALED---GEVEVSNAQEASVRVFERVW-ELEAEKGVNRTINSEVVCKLLAHTSQIGALVG 178
+ED E + AQ+A ++V + +E + ++ C++L +SQ L+G
Sbjct: 102 EIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPSSQSAILIG 161
Query: 179 KGGKNISTIRSNTCTKIRVCPSPP------CAAKDEELVLITGESLGVKKALVSVSHCL- 231
K G I +R T T I+V P CA + + VLITGES VK+AL +VS +
Sbjct: 162 KAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESEAVKRALFAVSTIMY 221
Query: 232 -----QDCP-----PLAKAXXXXXXXXXXXXXXXXXXXHDEL-----FPHL--NSWLPSM 274
+D P P D + FP L + + +
Sbjct: 222 KFSPKEDIPLDTTVPETPHSIIIPSELPIYPPGGLYPASDPIVQPRSFPQLIGATTMQDL 281
Query: 275 EGLSINDASRQTTNSNGNFNLDSKGAEH--QVVFRILCSNNVAGSVIGKRGAIVRALENK 332
G + + S+ + S GA +++ R+LC ++ G +IGK G ++ +
Sbjct: 282 HGGYADTGNTWPLYSSPLPVVSSLGASQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQA 341
Query: 333 TGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSV 392
+GA I E ++T++A E+ S A +AV+L+ +I ++
Sbjct: 342 SGARIEVDDSKARHDECLITITATESTSDLKSVAVEAVLLLQEKINDED----------- 390
Query: 393 ESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTASDNDVVVQITGG 452
++PV++RLLV S + C+ G G +I+E+++ T+ADIQI A DND +V++ G
Sbjct: 391 DAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQISRSNKPKYADDNDELVEVVGE 450
Query: 453 YRCVQNALHKITSRIRDNLYPNEVLAEAR---TNSNFQVNKDI-AEGNFSAHGKSAFPLG 508
CV++AL +I R+R+++ N+ + R + S + + + A S+ +A L
Sbjct: 451 VDCVRDALIQIVLRLREDVLKNKDIDHNRHIGSESLYASSSVLSAPPMLSSIPATAPALA 510
Query: 509 RFMRQNAGGHGGSNSENGVLHTDLSENSERGRGNMLATVTN----------TTVEIVVSE 558
R +G G +S D + G G+M + TN +T+E+VV
Sbjct: 511 YDQRTGSGTGLGMHSSRSHYGYDSYSMEDNGYGSMSSYATNLYEGHRLPPLSTLEMVVPA 570
Query: 559 HVFSSVYGEDGGNVDRIRQISGASVTVY 586
+ V G+ G N+ IR++S + + +Y
Sbjct: 571 NAVGKVMGKGGANLANIRKVS-SHIPIY 597
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 134/347 (38%), Gaps = 55/347 (15%)
Query: 296 DSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSA 355
D + + +RILC N V GSVIGK G ++ ++ ++ A + P R++T+
Sbjct: 34 DERDKGELIAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFC 93
Query: 356 -IENLGSS-----------YSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVA 403
++N AQDA+I V + I + I ++ ++LV
Sbjct: 94 HVKNKEEIEIEDEFDNEKPLCAAQDALIKVHS-AISNSIETAGDSEKKRKNKDECQILVP 152
Query: 404 SSSVNCLNGNEGQVISELKESTRADIQILHGEPV----PTASDNDVVVQITGGYRCVQNA 459
SS L G G I +L+ TR +I+++ + A + D V ITG V+ A
Sbjct: 153 SSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESEAVKRA 212
Query: 460 LHKITSRIRDNLYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPL----GRF----- 510
L +++ I P E + ++ + E S S P+ G +
Sbjct: 213 LFAVST-IMYKFSPKE---------DIPLDTTVPETPHSIIIPSELPIYPPGGLYPASDP 262
Query: 511 ---------------MRQNAGGHGGSNSENGVLHTDLSENSERGRGNMLATVTNTTVEIV 555
M+ GG+ + + + + L S G + V ++
Sbjct: 263 IVQPRSFPQLIGATTMQDLHGGYADTGNTWPLYSSPLPVVSSLG----ASQSEELIVRML 318
Query: 556 VSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGT 602
+ G+ GG + R+RQ SGA + V D A + + I+ T
Sbjct: 319 CPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITAT 365
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 204/450 (45%), Gaps = 49/450 (10%)
Query: 48 NYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDD 107
++ R F I VFR +C QLR ET KI + VPG D+
Sbjct: 32 DHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDE 91
Query: 108 RVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLL 167
RV+ + S + ++DG+ VS A++A ++ +RV + +V KLL
Sbjct: 92 RVVTVYSS--SDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLL 149
Query: 168 AHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKAL 224
+ QIG ++GKGG+ + +RS T +IR+ P CA + +ELV I+G++ VKKAL
Sbjct: 150 VPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKAL 209
Query: 225 VSVSHCLQDCP---------------PLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNS 269
++ L P P + +
Sbjct: 210 HQIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGD 269
Query: 270 WLPSMEGLSINDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRAL 329
W P S+ A R +S+ F++ R++C G VIGK G I+ +
Sbjct: 270 WPPR----SMYSAPRDEISSSKEFSV-----------RLVCPTGNLGGVIGKGGGIINQI 314
Query: 330 ENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPA 389
+GA+I + + ++T+S E ++SP +A +L+ R E
Sbjct: 315 RQDSGATIKVDSSAKG-DDCLITISTKEFFEETFSPTVEAAVLLQPRCSE---------K 364
Query: 390 SSVESPV---TVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDV 445
S +S + T RLLV+SS + CL G G +I+E++ T+++I+IL E +P ASD+D
Sbjct: 365 SERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDE 424
Query: 446 VVQITGGYRCVQNALHKITSRIRDNLYPNE 475
+VQI+G ++AL ++ +R+R NL+ E
Sbjct: 425 MVQISGDLDVAKDALVQVLTRLRANLFDRE 454
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 21/308 (6%)
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV------- 353
+ VFR LC GS+IG+ G IV+ L +T A I + ER+VTV
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 354 SAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGN 413
+ +++ SPA+DA+ + R++ + + + V +LLV S + C+ G
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQ--VNAKLLVPSDQIGCVLGK 161
Query: 414 EGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLY 472
GQ++ L+ T A I+IL + VP A +D +VQI+G V+ ALH+I SR+ N
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPS 221
Query: 473 PNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGGSNSENGVLHTDL 532
+ L + S + S G +A P M G +GG S+ G
Sbjct: 222 RTQHLLGSAVPS-------VYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRS 274
Query: 533 SENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGT 592
++ R + +++ +V +V V G+ GG +++IRQ SGA++ V D SA
Sbjct: 275 MYSAPR---DEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKG 330
Query: 593 SQGKVVIS 600
+ IS
Sbjct: 331 DDCLITIS 338
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 204/450 (45%), Gaps = 49/450 (10%)
Query: 48 NYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDD 107
++ R F I VFR +C QLR ET KI + VPG D+
Sbjct: 32 DHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDE 91
Query: 108 RVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLL 167
RV+ + S + ++DG+ VS A++A ++ +RV + +V KLL
Sbjct: 92 RVVTVYSS--SDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLL 149
Query: 168 AHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKAL 224
+ QIG ++GKGG+ + +RS T +IR+ P CA + +ELV I+G++ VKKAL
Sbjct: 150 VPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKAL 209
Query: 225 VSVSHCLQDCP---------------PLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNS 269
++ L P P + +
Sbjct: 210 HQIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGD 269
Query: 270 WLPSMEGLSINDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRAL 329
W P S+ A R +S+ F++ R++C G VIGK G I+ +
Sbjct: 270 WPPR----SMYSAPRDEISSSKEFSV-----------RLVCPTGNLGGVIGKGGGIINQI 314
Query: 330 ENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPA 389
+GA+I + + ++T+S E ++SP +A +L+ R E
Sbjct: 315 RQDSGATIKVDSSAKG-DDCLITISTKEFFEETFSPTVEAAVLLQPRCSE---------K 364
Query: 390 SSVESPV---TVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDV 445
S +S + T RLLV+SS + CL G G +I+E++ T+++I+IL E +P ASD+D
Sbjct: 365 SERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDE 424
Query: 446 VVQITGGYRCVQNALHKITSRIRDNLYPNE 475
+VQI+G ++AL ++ +R+R NL+ E
Sbjct: 425 MVQISGDLDVAKDALVQVLTRLRANLFDRE 454
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 21/308 (6%)
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV------- 353
+ VFR LC GS+IG+ G IV+ L +T A I + ER+VTV
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 354 SAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGN 413
+ +++ SPA+DA+ + R++ + + + V +LLV S + C+ G
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQ--VNAKLLVPSDQIGCVLGK 161
Query: 414 EGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLY 472
GQ++ L+ T A I+IL + VP A +D +VQI+G V+ ALH+I SR+ N
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPS 221
Query: 473 PNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGGSNSENGVLHTDL 532
+ L + S + S G +A P M G +GG S+ G
Sbjct: 222 RTQHLLGSAVPS-------VYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRS 274
Query: 533 SENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGT 592
++ R + +++ +V +V V G+ GG +++IRQ SGA++ V D SA
Sbjct: 275 MYSAPR---DEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKG 330
Query: 593 SQGKVVIS 600
+ IS
Sbjct: 331 DDCLITIS 338
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 204/450 (45%), Gaps = 49/450 (10%)
Query: 48 NYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDD 107
++ R F I VFR +C QLR ET KI + VPG D+
Sbjct: 32 DHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDE 91
Query: 108 RVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLL 167
RV+ + S + ++DG+ VS A++A ++ +RV + +V KLL
Sbjct: 92 RVVTVYSS--SDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLL 149
Query: 168 AHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKAL 224
+ QIG ++GKGG+ + +RS T +IR+ P CA + +ELV I+G++ VKKAL
Sbjct: 150 VPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKAL 209
Query: 225 VSVSHCLQDCP---------------PLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNS 269
++ L P P + +
Sbjct: 210 HQIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGD 269
Query: 270 WLPSMEGLSINDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRAL 329
W P S+ A R +S+ F++ R++C G VIGK G I+ +
Sbjct: 270 WPPR----SMYSAPRDEISSSKEFSV-----------RLVCPTGNLGGVIGKGGGIINQI 314
Query: 330 ENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPA 389
+GA+I + + ++T+S E ++SP +A +L+ R E
Sbjct: 315 RQDSGATIKVDSSAKG-DDCLITISTKEFFEETFSPTVEAAVLLQPRCSE---------K 364
Query: 390 SSVESPV---TVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDV 445
S +S + T RLLV+SS + CL G G +I+E++ T+++I+IL E +P ASD+D
Sbjct: 365 SERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDE 424
Query: 446 VVQITGGYRCVQNALHKITSRIRDNLYPNE 475
+VQI+G ++AL ++ +R+R NL+ E
Sbjct: 425 MVQISGDLDVAKDALVQVLTRLRANLFDRE 454
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 21/308 (6%)
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV------- 353
+ VFR LC GS+IG+ G IV+ L +T A I + ER+VTV
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 354 SAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGN 413
+ +++ SPA+DA+ + R++ + + + V +LLV S + C+ G
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQ--VNAKLLVPSDQIGCVLGK 161
Query: 414 EGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLY 472
GQ++ L+ T A I+IL + VP A +D +VQI+G V+ ALH+I SR+ N
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPS 221
Query: 473 PNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGGSNSENGVLHTDL 532
+ L + S + S G +A P M G +GG S+ G
Sbjct: 222 RTQHLLGSAVPS-------VYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRS 274
Query: 533 SENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGT 592
++ R + +++ +V +V V G+ GG +++IRQ SGA++ V D SA
Sbjct: 275 MYSAPR---DEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKG 330
Query: 593 SQGKVVIS 600
+ IS
Sbjct: 331 DDCLITIS 338
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 204/450 (45%), Gaps = 49/450 (10%)
Query: 48 NYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDD 107
++ R F I VFR +C QLR ET KI + VPG D+
Sbjct: 32 DHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDE 91
Query: 108 RVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLL 167
RV+ + S + ++DG+ VS A++A ++ +RV + +V KLL
Sbjct: 92 RVVTVYSS--SDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLL 149
Query: 168 AHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKAL 224
+ QIG ++GKGG+ + +RS T +IR+ P CA + +ELV I+G++ VKKAL
Sbjct: 150 VPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKAL 209
Query: 225 VSVSHCLQDCP---------------PLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNS 269
++ L P P + +
Sbjct: 210 HQIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGD 269
Query: 270 WLPSMEGLSINDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRAL 329
W P S+ A R +S+ F++ R++C G VIGK G I+ +
Sbjct: 270 WPPR----SMYSAPRDEISSSKEFSV-----------RLVCPTGNLGGVIGKGGGIINQI 314
Query: 330 ENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPA 389
+GA+I + + ++T+S E ++SP +A +L+ R E
Sbjct: 315 RQDSGATIKVDSSAKG-DDCLITISTKEFFEETFSPTVEAAVLLQPRCSE---------K 364
Query: 390 SSVESPV---TVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDV 445
S +S + T RLLV+SS + CL G G +I+E++ T+++I+IL E +P ASD+D
Sbjct: 365 SERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDE 424
Query: 446 VVQITGGYRCVQNALHKITSRIRDNLYPNE 475
+VQI+G ++AL ++ +R+R NL+ E
Sbjct: 425 MVQISGDLDVAKDALVQVLTRLRANLFDRE 454
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 21/308 (6%)
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV------- 353
+ VFR LC GS+IG+ G IV+ L +T A I + ER+VTV
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 354 SAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGN 413
+ +++ SPA+DA+ + R++ + + + V +LLV S + C+ G
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQ--VNAKLLVPSDQIGCVLGK 161
Query: 414 EGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLY 472
GQ++ L+ T A I+IL + VP A +D +VQI+G V+ ALH+I SR+ N
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPS 221
Query: 473 PNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGGSNSENGVLHTDL 532
+ L + S + S G +A P M G +GG S+ G
Sbjct: 222 RTQHLLGSAVPS-------VYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRS 274
Query: 533 SENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGT 592
++ R + +++ +V +V V G+ GG +++IRQ SGA++ V D SA
Sbjct: 275 MYSAPR---DEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKG 330
Query: 593 SQGKVVIS 600
+ IS
Sbjct: 331 DDCLITIS 338
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/441 (27%), Positives = 192/441 (43%), Gaps = 35/441 (7%)
Query: 53 RPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILI 112
R F I V+R +C QLR +T KI + VPG D+RV+ +
Sbjct: 39 RDTFHITQDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTV 98
Query: 113 IGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSE-------VVCK 165
+ ED + A +A VR+ ++V + + ++ E V K
Sbjct: 99 YS--VSDESNDFEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAK 156
Query: 166 LLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKK 222
LL + QIG ++GKGG+ + IRS T +IR+ P CA +ELV I+GE VKK
Sbjct: 157 LLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKK 216
Query: 223 ALVSVSHCLQDCPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPSMEGLSINDA 282
AL+ V+ L D P + H P M I
Sbjct: 217 ALIQVAARLHDNPSRTQHLLTSAVPGVYAASGSMVGSH--------GGAPIMGMAPIGGG 268
Query: 283 SRQTTNSNGNF------NLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGAS 336
++ +G+ + R +C G VIGK G I+ + +GA+
Sbjct: 269 YGGYKGDVVDYPRSMYPGSRDEGSVKEFSVRFVCPTANIGGVIGKGGGIINQIRQDSGAN 328
Query: 337 IIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIED-HIGKGFLPASSVESP 395
I + + ++ +SA E +S +A +L+ R E G L +S
Sbjct: 329 IKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSEKVERDSGILSFTS---- 384
Query: 396 VTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYR 454
RLLV+SS + CL G G +I+E++ T+A+I+IL E +P A+++D +VQI+G
Sbjct: 385 ---RLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQISGELD 441
Query: 455 CVQNALHKITSRIRDNLYPNE 475
++AL ++ +R+R NL+ E
Sbjct: 442 IAKDALLQVLTRLRANLFDKE 462
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/441 (27%), Positives = 192/441 (43%), Gaps = 35/441 (7%)
Query: 53 RPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILI 112
R F I V+R +C QLR +T KI + VPG D+RV+ +
Sbjct: 39 RDTFHITQDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTV 98
Query: 113 IGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSE-------VVCK 165
+ ED + A +A VR+ ++V + + ++ E V K
Sbjct: 99 YS--VSDESNDFEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAK 156
Query: 166 LLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKK 222
LL + QIG ++GKGG+ + IRS T +IR+ P CA +ELV I+GE VKK
Sbjct: 157 LLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKK 216
Query: 223 ALVSVSHCLQDCPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPSMEGLSINDA 282
AL+ V+ L D P + H P M I
Sbjct: 217 ALIQVAARLHDNPSRTQHLLTSAVPGVYAASGSMVGSH--------GGAPIMGMAPIGGG 268
Query: 283 SRQTTNSNGNF------NLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGAS 336
++ +G+ + R +C G VIGK G I+ + +GA+
Sbjct: 269 YGGYKGDVVDYPRSMYPGSRDEGSVKEFSVRFVCPTANIGGVIGKGGGIINQIRQDSGAN 328
Query: 337 IIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIED-HIGKGFLPASSVESP 395
I + + ++ +SA E +S +A +L+ R E G L +S
Sbjct: 329 IKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSEKVERDSGILSFTS---- 384
Query: 396 VTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYR 454
RLLV+SS + CL G G +I+E++ T+A+I+IL E +P A+++D +VQI+G
Sbjct: 385 ---RLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQISGELD 441
Query: 455 CVQNALHKITSRIRDNLYPNE 475
++AL ++ +R+R NL+ E
Sbjct: 442 IAKDALLQVLTRLRANLFDKE 462
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 116/423 (27%), Positives = 187/423 (44%), Gaps = 49/423 (11%)
Query: 48 NYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDD 107
++ R F I VFR +C QLR ET KI + VPG D+
Sbjct: 32 DHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDE 91
Query: 108 RVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLL 167
RV+ + S + ++DG+ VS A++A ++ +RV + +V KLL
Sbjct: 92 RVVTVYSS--SDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLL 149
Query: 168 AHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKAL 224
+ QIG ++GKGG+ + +RS T +IR+ P CA + +ELV I+G++ VKKAL
Sbjct: 150 VPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKAL 209
Query: 225 VSVSHCLQDCP---------------PLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNS 269
++ L P P + +
Sbjct: 210 HQIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGD 269
Query: 270 WLPSMEGLSINDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRAL 329
W P S+ A R +S+ F++ R++C G VIGK G I+ +
Sbjct: 270 WPPR----SMYSAPRDEISSSKEFSV-----------RLVCPTGNLGGVIGKGGGIINQI 314
Query: 330 ENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPA 389
+GA+I + + ++T+S E ++SP +A +L+ R E
Sbjct: 315 RQDSGATIKVDSSAKG-DDCLITISTKEFFEETFSPTVEAAVLLQPRCSE---------K 364
Query: 390 SSVESPV---TVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDV 445
S +S + T RLLV+SS + CL G G +I+E++ T+++I+IL E +P ASD+D
Sbjct: 365 SERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDE 424
Query: 446 VVQ 448
+VQ
Sbjct: 425 MVQ 427
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 21/308 (6%)
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV------- 353
+ VFR LC GS+IG+ G IV+ L +T A I + ER+VTV
Sbjct: 44 KEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDET 103
Query: 354 SAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGN 413
+ +++ SPA+DA+ + R++ + + + V +LLV S + C+ G
Sbjct: 104 NTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQ--VNAKLLVPSDQIGCVLGK 161
Query: 414 EGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLY 472
GQ++ L+ T A I+IL + VP A +D +VQI+G V+ ALH+I SR+ N
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPS 221
Query: 473 PNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGGSNSENGVLHTDL 532
+ L + S + S G +A P M G +GG S+ G
Sbjct: 222 RTQHLLGSAVPSVY-------PSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRS 274
Query: 533 SENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGT 592
++ R + +++ +V +V V G+ GG +++IRQ SGA++ V D SA
Sbjct: 275 MYSAPR---DEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKG 330
Query: 593 SQGKVVIS 600
+ IS
Sbjct: 331 DDCLITIS 338
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 144/347 (41%), Gaps = 40/347 (11%)
Query: 305 VFRILCSNNVAGSVIGKRGAIVRALENKTGASI-IFAAPINNFAERIVTVSAIENLGSSY 363
VFR+L G +IG++G ++ + +T A + I P +ER V VSA + GSS
Sbjct: 116 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGT-SERAVMVSAKDEPGSSL 174
Query: 364 SPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKE 423
PA D ++ R+I+ G S + V+ + LV +S L G +G + ++E
Sbjct: 175 PPAVDGLLKAHKRLID-----GLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQE 229
Query: 424 STRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLAEART 482
++ +++L E +P A +D VV++ G V A+ I S ++ L ++
Sbjct: 230 ASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRSIIPIFEM 289
Query: 483 NSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGG-----------SNSENGVLHTD 531
+ N + ++ + + NAGG G +N +
Sbjct: 290 SMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPRRQVDNYYPPAE 349
Query: 532 LSEN---------SERGRGNML------------ATVTNTTVEIVVSEHVFSSVYGEDGG 570
+ S GR + + VT T ++ + +V G G
Sbjct: 350 MPPPLDKQPHHGISAYGRDASIGVHASSNTQSAPSMVTQITQQMQIPLSYADAVIGTAGT 409
Query: 571 NVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFI 617
N+ IR+ SGA+VT+ + + V ISGT Q AQ L+Q F+
Sbjct: 410 NISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 456
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG+ VFR++ A ++ ET ++ D PGT +R +++
Sbjct: 112 PGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMV------- 164
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWE-LEAEKGVNRTINSEVVCKLLAHTSQIGALVG 178
A ++ + A + ++ +R+ + L+A G + +V K L SQ G+L+G
Sbjct: 165 --SAKDEPGSSLPPAVDGLLKAHKRLIDGLDAPSG----LAGKVSTKFLVPASQAGSLIG 218
Query: 179 KGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKALVSVSHCLQ 232
K G + +I+ + +RV + P A +D+ +V + G+ +GV KA+ ++ L+
Sbjct: 219 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLK 275
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 144/347 (41%), Gaps = 40/347 (11%)
Query: 305 VFRILCSNNVAGSVIGKRGAIVRALENKTGASI-IFAAPINNFAERIVTVSAIENLGSSY 363
VFR+L G +IG++G ++ + +T A + I P +ER V VSA + GSS
Sbjct: 48 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGT-SERAVMVSAKDEPGSSL 106
Query: 364 SPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKE 423
PA D ++ R+I+ G S + V+ + LV +S L G +G + ++E
Sbjct: 107 PPAVDGLLKAHKRLID-----GLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQE 161
Query: 424 STRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLAEART 482
++ +++L E +P A +D VV++ G V A+ I S ++ L ++
Sbjct: 162 ASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRSIIPIFEM 221
Query: 483 NSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGG-----------SNSENGVLHTD 531
+ N + ++ + + NAGG G +N +
Sbjct: 222 SMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPRRQVDNYYPPAE 281
Query: 532 LSEN---------SERGRGNML------------ATVTNTTVEIVVSEHVFSSVYGEDGG 570
+ S GR + + VT T ++ + +V G G
Sbjct: 282 MPPPLDKQPHHGISAYGRDASIGVHASSNTQSAPSMVTQITQQMQIPLSYADAVIGTAGT 341
Query: 571 NVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFI 617
N+ IR+ SGA+VT+ + + V ISGT Q AQ L+Q F+
Sbjct: 342 NISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 388
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG+ VFR++ A ++ ET ++ D PGT +R +++
Sbjct: 44 PGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMV------- 96
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWE-LEAEKGVNRTINSEVVCKLLAHTSQIGALVG 178
A ++ + A + ++ +R+ + L+A G + +V K L SQ G+L+G
Sbjct: 97 --SAKDEPGSSLPPAVDGLLKAHKRLIDGLDAPSG----LAGKVSTKFLVPASQAGSLIG 150
Query: 179 KGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKALVSVSHCLQ 232
K G + +I+ + +RV + P A +D+ +V + G+ +GV KA+ ++ L+
Sbjct: 151 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLK 207
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 154/342 (45%), Gaps = 34/342 (9%)
Query: 305 VFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYS 364
VFR++ G +IG++G +++ L ++T A + +RI+ +S E L ++ S
Sbjct: 71 VFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILISGKEELEAAIS 130
Query: 365 PAQDAVILVFARII----EDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISE 420
PA DAVI +F R+ D KG PA + ++RLLVAS+ L G +G +I
Sbjct: 131 PAMDAVIRIFKRVSGLSETDSENKG--PAGV--TLCSIRLLVASTQAISLIGKQGTIIRS 186
Query: 421 LKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLA- 478
++ES+ A +++L G+ V A+ + +V + G V AL + +R L + +L
Sbjct: 187 IQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFLVDHSILPV 246
Query: 479 -EARTNSNFQVNKDIAE-----------GNFSAHGKSAFPLGR---FM-RQNAGGHGGSN 522
E N++ AE S FP R F R++ S+
Sbjct: 247 YEKTYNASLPQQDRQAETWSDKPLLHTTSQTSMFSDIPFPTKRDSVFADRESHLDSLLSS 306
Query: 523 SENGVLHTDLSENSERGR-----GNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQ 577
S + D S + R G + T T++I +S + G G N+D IR+
Sbjct: 307 STMSLYGQDSSLSGVRSSSLSRVGAPIVTTVIQTMQIPLS--YAEDIIGIQGTNIDYIRR 364
Query: 578 ISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFIQS 619
SGA +TV + S + V I GT Q AQ L+Q I S
Sbjct: 365 TSGAILTVQE-SRVPDEIVVEIKGTTSQVQTAQQLIQEVISS 405
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG VFRL+ +L ET ++ DA G DR+ILI G
Sbjct: 67 PGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILISGK---- 122
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVC--KLLAHTSQIGALV 177
E+ E +S A +A +R+F+RV L N+ +C +LL ++Q +L+
Sbjct: 123 -----EELEAAISPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVASTQAISLI 177
Query: 178 GKGGKNISTIRSNTCTKIRVCPSPPC---AAKDEELVLITGESLGVKKALVSV 227
GK G I +I+ ++ +RV A +E +V + GE+L V KAL +V
Sbjct: 178 GKQGTIIRSIQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAV 230
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 56/337 (16%)
Query: 287 TNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNF 346
T S+ + + V+FRI+ + G VIGK G ++ + T A+I A I
Sbjct: 83 TASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARH 142
Query: 347 AERIVTVSAIENLGSSYSPAQDAVILVFARIIEDH---IGKGFLPASSVESPVTVRLLVA 403
ER++ +S+ +N + A+ A+ + I+++ L A V + T+RLL+A
Sbjct: 143 EERVIIISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAAN-TIRLLIA 200
Query: 404 SSSVNCLNGNEGQVISELKESTRADIQILHGEPVP---TASDNDVVVQITGGYRCVQNAL 460
S L G GQ I +L+ S+ A I +L +P +A ++D VVQ++G V AL
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKAL 260
Query: 461 HKITSRIRDNLYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGG 520
+I ++R+N P +V++ + T N++A P ++ N
Sbjct: 261 EEIGCQLREN-PPRQVISISPTY------------NYAA----IRPSQPYLDPN------ 297
Query: 521 SNSENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISG 580
+V T E+++SE + + G G N+ RIR SG
Sbjct: 298 -------------------------SVDYVTFEMLISETMVGGLIGRCGSNISRIRNESG 332
Query: 581 ASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFI 617
A + VY ++ G+ +Q A+ + +I
Sbjct: 333 AMIKVYGGKGEQKHRQIQFGGSAEQVALAKKRVDEYI 369
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 56/337 (16%)
Query: 287 TNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNF 346
T S+ + + V+FRI+ + G VIGK G ++ + T A+I A I
Sbjct: 83 TASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARH 142
Query: 347 AERIVTVSAIENLGSSYSPAQDAVILVFARIIEDH---IGKGFLPASSVESPVTVRLLVA 403
ER++ +S+ +N + A+ A+ + I+++ L A V + T+RLL+A
Sbjct: 143 EERVIIISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAAN-TIRLLIA 200
Query: 404 SSSVNCLNGNEGQVISELKESTRADIQILHGEPVP---TASDNDVVVQITGGYRCVQNAL 460
S L G GQ I +L+ S+ A I +L +P +A ++D VVQ++G V AL
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKAL 260
Query: 461 HKITSRIRDNLYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGG 520
+I ++R+N P +V++ + T N++A P ++ N
Sbjct: 261 EEIGCQLREN-PPRQVISISPTY------------NYAA----IRPSQPYLDPN------ 297
Query: 521 SNSENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISG 580
+V T E+++SE + + G G N+ RIR SG
Sbjct: 298 -------------------------SVDYVTFEMLISETMVGGLIGRCGSNISRIRNESG 332
Query: 581 ASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFI 617
A + VY ++ G+ +Q A+ + +I
Sbjct: 333 AMIKVYGGKGEQKHRQIQFGGSAEQVALAKKRVDEYI 369
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 56/337 (16%)
Query: 287 TNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNF 346
T S+ + + V+FRI+ + G VIGK G ++ + T A+I A I
Sbjct: 83 TASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARH 142
Query: 347 AERIVTVSAIENLGSSYSPAQDAVILVFARIIEDH---IGKGFLPASSVESPVTVRLLVA 403
ER++ +S+ +N + A+ A+ + I+++ L A V + T+RLL+A
Sbjct: 143 EERVIIISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAAN-TIRLLIA 200
Query: 404 SSSVNCLNGNEGQVISELKESTRADIQILHGEPVP---TASDNDVVVQITGGYRCVQNAL 460
S L G GQ I +L+ S+ A I +L +P +A ++D VVQ++G V AL
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKAL 260
Query: 461 HKITSRIRDNLYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAGGHGG 520
+I ++R+N P +V++ + T N++A P ++ N
Sbjct: 261 EEIGCQLREN-PPRQVISISPTY------------NYAA----IRPSQPYLDPN------ 297
Query: 521 SNSENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISG 580
+V T E+++SE + + G G N+ RIR SG
Sbjct: 298 -------------------------SVDYVTFEMLISETMVGGLIGRCGSNISRIRNESG 332
Query: 581 ASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFI 617
A + VY ++ G+ +Q A+ + +I
Sbjct: 333 AMIKVYGGKGEQKHRQIQFGGSAEQVALAKKRVDEYI 369
>Medtr5g031580.1 | RNA-binding KH domain protein, putative | HC |
chr5:13551924-13551404 | 20130731
Length = 61
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/48 (83%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 577 QISGASVTVYDPS-AGTSQGKVVISGTPDQTFAAQSLLQAFIQSGQVS 623
QISGA VTV+DPS GTS GKVVISGTPDQTFAAQSLLQAFIQ+ Q S
Sbjct: 14 QISGADVTVFDPSNTGTSGGKVVISGTPDQTFAAQSLLQAFIQTAQAS 61
>Medtr5g031530.1 | RNA-binding KH domain protein | HC |
chr5:13536526-13535669 | 20130731
Length = 60
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/48 (83%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Query: 577 QISGASVTVYDPSA-GTSQGKVVISGTPDQTFAAQSLLQAFIQSGQVS 623
QISGA VTV+DPS+ GTS GKVVISGTPDQTFAAQSLLQAFIQ+ Q S
Sbjct: 13 QISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFIQTAQAS 60
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 151/333 (45%), Gaps = 22/333 (6%)
Query: 305 VFRILCSNNVAGSVIGKRGAIVRALENKTGASI-IFAAPINNFAERIVTVSAIENLGSSY 363
VFR++ G +IG++G +++ +T A I + AP+ +RIV +S E+L +
Sbjct: 45 VFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGT-PDRIVLISGKEDLEAPL 103
Query: 364 SPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKE 423
SPA DA++ +F R+ A++ + ++RLLVAS+ L G +G I ++E
Sbjct: 104 SPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQE 163
Query: 424 STRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLAEART 482
+T A I++L G+ +P+ A ++ ++ + G V AL + +R L + V+
Sbjct: 164 NTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVGHLRKFLVDSSVIPLFEK 223
Query: 483 NSNFQVNKDIAEGN-------FSAHGKSA---FPLGR---FMRQNAGGHGGSNSENGVLH 529
N +++D +SA S P R F + + +S L+
Sbjct: 224 TCNATISQDRQTDAWADKPSLYSASQPSIVADIPTKRDSFFADRESQLDSLLSSSTMSLY 283
Query: 530 TDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGED-----GGNVDRIRQISGASVT 584
S + R + + + V V+ Y ED G N+D IR+ SGA +T
Sbjct: 284 GQDSSSISGLRSSAFNRASASIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILT 343
Query: 585 VYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFI 617
V + S + V I GT Q AQ L+Q I
Sbjct: 344 VQE-SRVPDEIIVEIKGTSTQVQTAQQLIQEVI 375
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG VFRL+ + ET +I DA GT DR++LI G
Sbjct: 41 PGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGK---- 96
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVC--KLLAHTSQIGALV 177
ED E +S A +A +R+F+RV L N +C +LL ++Q L+
Sbjct: 97 -----EDLEAPLSPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQAINLI 151
Query: 178 GKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKALVSV 227
GK G +I I+ NT IRV P A DE ++ + GE+L V KAL +V
Sbjct: 152 GKQGSSIKAIQENTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAV 204
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 287 TNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNF 346
T S+ + + V+FRI+ + G VIGK G ++ + T A+I A I
Sbjct: 83 TASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARH 142
Query: 347 AERIVTVSAIENLGSSYSPAQDAVILVFARIIEDH---IGKGFLPASSVESPVTVRLLVA 403
ER++ +S+ +N + A+ A+ + I+++ L A V + T+RLL+A
Sbjct: 143 EERVIIISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAA-NTIRLLIA 200
Query: 404 SSSVNCLNGNEGQVISELKESTRADIQILHGEPVP---TASDNDVVVQITGGYRCVQNAL 460
S L G GQ I +L+ S+ A I +L +P +A ++D VVQ++G V AL
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKAL 260
Query: 461 HKITSRIRDNLYPNEVLA 478
+I ++R+N P +V++
Sbjct: 261 EEIGCQLREN-PPRQVIS 277
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 287 TNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNF 346
T S+ + + V+FRI+ + G VIGK G ++ + T A+I A I
Sbjct: 83 TASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARH 142
Query: 347 AERIVTVSAIENLGSSYSPAQDAVILVFARIIEDH---IGKGFLPASSVESPVTVRLLVA 403
ER++ +S+ +N + A+ A+ + I+++ L A V + T+RLL+A
Sbjct: 143 EERVIIISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAA-NTIRLLIA 200
Query: 404 SSSVNCLNGNEGQVISELKESTRADIQILHGEPVP---TASDNDVVVQITGGYRCVQNAL 460
S L G GQ I +L+ S+ A I +L +P +A ++D VVQ++G V AL
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKAL 260
Query: 461 HKITSRIRDNLYPNEVLA 478
+I ++R+N P +V++
Sbjct: 261 EEIGCQLREN-PPRQVIS 277
>Medtr5g031500.1 | hypothetical protein | LC |
chr5:13518708-13516266 | 20130731
Length = 105
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 35/43 (81%)
Query: 577 QISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFIQS 619
+IS A VTVY PS G S G VVISG PDQTFAAQSLLQAFIQ+
Sbjct: 39 RISNAKVTVYGPSVGRSGGNVVISGMPDQTFAAQSLLQAFIQA 81
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Query: 305 VFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYS 364
VFR+L GS+IG++G ++ + +T A + AER V VSA E
Sbjct: 166 VFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIP 225
Query: 365 PAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKES 424
PA + ++ V ++ + + + A P RLLVA + L G +G I ++S
Sbjct: 226 PAVEGLLRVHKQVA-NVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDS 284
Query: 425 TRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNL 471
T +I+IL E +P A +D +V+I G V A+ I +R L
Sbjct: 285 TGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFL 332
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG+ VFR++ A ++ ET ++ D GT +R +++
Sbjct: 162 PGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMV------- 214
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWELEAE-----KGVNRTINSEVVCKLLAHTSQIG 174
A E+ + + A E +RV ++V + +E +G R + +LL +Q G
Sbjct: 215 --SAKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRP----SITRLLVADTQAG 268
Query: 175 ALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKAL 224
+L+GK G I + +T IR+ S P A +D+ +V I GE GV KA+
Sbjct: 269 SLIGKQGSTIKIFQDSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAV 321
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 3/169 (1%)
Query: 305 VFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYS 364
VFR+L GS+IG++G ++ + +T A + AER V VSA E
Sbjct: 166 VFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIP 225
Query: 365 PAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKES 424
PA + ++ V ++ + + + A P RLLVA + L G +G I ++S
Sbjct: 226 PAVEGLLRVHKQVA-NVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDS 284
Query: 425 TRADIQIL-HGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNL 471
T +I+IL E +P A +D +V+I G V A+ I +R L
Sbjct: 285 TGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFL 333
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG+ VFR++ A ++ ET ++ D GT +R +++
Sbjct: 162 PGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMV------- 214
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWELEAE-----KGVNRTINSEVVCKLLAHTSQIG 174
A E+ + + A E +RV ++V + +E +G R + +LL +Q G
Sbjct: 215 --SAKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRP----SITRLLVADTQAG 268
Query: 175 ALVGKGGKNISTIRSNTCTKIRVCPS----PPCAAKDEELVLITGESLGVKKAL 224
+L+GK G I + +T IR+ S P A +D+ +V I GE GV KA+
Sbjct: 269 SLIGKQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAV 322
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 3/169 (1%)
Query: 305 VFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYS 364
VFR+L GS+IG++G ++ + +T A + AER V VSA E
Sbjct: 166 VFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIP 225
Query: 365 PAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKES 424
PA + ++ V ++ + + + A P RLLVA + L G +G I ++S
Sbjct: 226 PAVEGLLRVHKQVA-NVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDS 284
Query: 425 TRADIQIL-HGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNL 471
T +I+IL E +P A +D +V+I G V A+ I +R L
Sbjct: 285 TGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFL 333
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG+ VFR++ A ++ ET ++ D GT +R +++
Sbjct: 162 PGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMV------- 214
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWELEAE-----KGVNRTINSEVVCKLLAHTSQIG 174
A E+ + + A E +RV ++V + +E +G R + +LL +Q G
Sbjct: 215 --SAKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRP----SITRLLVADTQAG 268
Query: 175 ALVGKGGKNISTIRSNTCTKIRVCPS----PPCAAKDEELVLITGESLGVKKAL 224
+L+GK G I + +T IR+ S P A +D+ +V I GE GV KA+
Sbjct: 269 SLIGKQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAV 322
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 134/326 (41%), Gaps = 49/326 (15%)
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNF---AERIVTVSAIE 357
E R L SN+ AGSVIGK G+ + ++++GA I + F +RI+ VS
Sbjct: 33 EKPTYVRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAI 92
Query: 358 NLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQV 417
N AV L+ ++++ + + + VE VRL+V + S + G G
Sbjct: 93 N------EVLRAVELILSKLLSELHSE---DDNDVEPKTKVRLIVPNGSCGGIIGKGGAT 143
Query: 418 ISELKESTRADIQI------LHGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNL 471
I E ++A I+I +G+ ND +V +TG + I S++ ++
Sbjct: 144 IRSFIEESQAGIKISPQDNSYYGQ-------NDRIVTVTGTLDEQMRGIDLIVSKLAEDP 196
Query: 472 YPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNA-GGHGGSNSENGVLHT 530
+ + ++ T S V+ G P + A + G N
Sbjct: 197 HYSHSMSSPFTYSGAYVS-----------GYQGVPYTYVLPSVAPPAYNGVNYRPNGTGA 245
Query: 531 DLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPS- 589
+NS+ R N + I V++ V G G N+ I Q SGA + + D
Sbjct: 246 KF-QNSKEDRSNSMT--------IGVADEHIGLVVGRGGRNISDISQTSGAKIKISDRGD 296
Query: 590 --AGTSQGKVVISGTPDQTFAAQSLL 613
+GT+ KV I+G+ A+S++
Sbjct: 297 YISGTTDRKVTITGSQRAIRTAESMI 322
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 134/326 (41%), Gaps = 49/326 (15%)
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNF---AERIVTVSAIE 357
E R L SN+ AGSVIGK G+ + ++++GA I + F +RI+ VS
Sbjct: 33 EKPTYVRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAI 92
Query: 358 NLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQV 417
N AV L+ ++++ + + + VE VRL+V + S + G G
Sbjct: 93 N------EVLRAVELILSKLLSELHSE---DDNDVEPKTKVRLIVPNGSCGGIIGKGGAT 143
Query: 418 ISELKESTRADIQI------LHGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNL 471
I E ++A I+I +G+ ND +V +TG + I S++ ++
Sbjct: 144 IRSFIEESQAGIKISPQDNSYYGQ-------NDRIVTVTGTLDEQMRGIDLIVSKLAEDP 196
Query: 472 YPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNA-GGHGGSNSENGVLHT 530
+ + ++ T S V+ G P + A + G N
Sbjct: 197 HYSHSMSSPFTYSGAYVS-----------GYQGVPYTYVLPSVAPPAYNGVNYRPNGTGA 245
Query: 531 DLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPS- 589
+NS+ R N + I V++ V G G N+ I Q SGA + + D
Sbjct: 246 KF-QNSKEDRSNSMT--------IGVADEHIGLVVGRGGRNISDISQTSGAKIKISDRGD 296
Query: 590 --AGTSQGKVVISGTPDQTFAAQSLL 613
+GT+ KV I+G+ A+S++
Sbjct: 297 YISGTTDRKVTITGSQRAIRTAESMI 322