Miyakogusa Predicted Gene

Lj2g3v1414960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1414960.1 Non Characterized Hit- tr|I3SBY2|I3SBY2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=3
SV=1,98.59,2e-33,RNA_POL_N_8KD,RNA polymerases, subunit N, zinc
binding site; RNA polymerase subunit RPB10,RNA polyme,CUFF.36986.1
         (71 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g034050.1 | DNA-directed RNA polymerase II 8.2 kDa protein...   134   2e-32
Medtr4g075600.1 | DNA-directed RNA polymerase II 8.2 kDa protein...   130   2e-31
Medtr5g034040.1 | DNA-directed RNA polymerase II 8.2 kDa protein...   125   1e-29

>Medtr5g034050.1 | DNA-directed RNA polymerase II 8.2 kDa protein
          | HC | chr5:14717086-14713333 | 20130731
          Length = 71

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 67/71 (94%)

Query: 1  MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLD LQ+DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 71
          NYNT++K + +
Sbjct: 61 NYNTMEKHEAN 71


>Medtr4g075600.1 | DNA-directed RNA polymerase II 8.2 kDa protein
          | LC | chr4:28891413-28888810 | 20130731
          Length = 147

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/64 (93%), Positives = 62/64 (96%)

Query: 1  MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLD LQ+DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNT 64
          NYNT
Sbjct: 61 NYNT 64


>Medtr5g034040.1 | DNA-directed RNA polymerase II 8.2 kDa protein |
           LC | chr5:14712702-14705432 | 20130731
          Length = 123

 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 65/71 (91%)

Query: 1   MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
           MIIPVRCFTCGKV+G+KWD YL+LLQS Y+EGDALD+LGLVRYCCRRMLMTHV+LI+KLL
Sbjct: 53  MIIPVRCFTCGKVVGDKWDTYLELLQSGYTEGDALDSLGLVRYCCRRMLMTHVELIDKLL 112

Query: 61  NYNTLDKSDTS 71
           NYN L+K   +
Sbjct: 113 NYNPLEKHGAN 123