Miyakogusa Predicted Gene

Lj2g3v1414880.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1414880.2 Non Characterized Hit- tr|K3Y2U2|K3Y2U2_SETIT
Uncharacterized protein OS=Setaria italica GN=Si008523,31.9,8e-17,
,CUFF.36978.2
         (246 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g034180.1 | hypothetical protein | HC | chr5:14788667-1478...   337   4e-93

>Medtr5g034180.1 | hypothetical protein | HC |
           chr5:14788667-14782542 | 20130731
          Length = 475

 Score =  337 bits (865), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 168/220 (76%), Positives = 182/220 (82%), Gaps = 9/220 (4%)

Query: 2   KNGAIFSGTEVCLSPIISLDLLVAEIHSFVQK-------NVAIQLVAEDCDVLGSRYEKV 54
           KNGA FSG+EVCLS  ++ DLL+AEIHS ++K       NVAIQLV+ED DV  SRYEKV
Sbjct: 113 KNGAKFSGSEVCLSSFVNSDLLLAEIHSLLEKVLILNIPNVAIQLVSEDFDVPESRYEKV 172

Query: 55  FPANMCNDLSIPAANLERLMSGLEDYVLKHGNNLSDKCNSCFPSWETLKVGSGVVCCTEN 114
           F AN C  L I A++LE L  GL DYVLKHGNNLS KCNSCF SWE LKVG  V CCTEN
Sbjct: 173 FLANTCKQLPISASSLELLKFGLGDYVLKHGNNLSIKCNSCFTSWEDLKVG--VACCTEN 230

Query: 115 RLHTELVMEAVIILSNISIQNTTCLREYGDKTEVLYFKDFSPCTMSQSSMKALKGIGWKR 174
           RLHTELVMEAVI++SN+SIQNTTC REYGDKTEVLYFKDFSPC MSQSSMKALK I WKR
Sbjct: 231 RLHTELVMEAVIVISNMSIQNTTCFREYGDKTEVLYFKDFSPCAMSQSSMKALKSIDWKR 290

Query: 175 YGLHLGGIVEKDGFAILEWENLPSDTHIDIVLHSYHKQYP 214
           YGLHLGGIVE DG A+LEWENLP+DTHIDIVLHSY KQYP
Sbjct: 291 YGLHLGGIVELDGTALLEWENLPTDTHIDIVLHSYLKQYP 330