Miyakogusa Predicted Gene

Lj2g3v1402710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1402710.1 Non Characterized Hit- tr|G7K1E1|G7K1E1_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,64.08,1e-18,seg,NULL,CUFF.36972.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g034340.1 | hypothetical protein | HC | chr5:14872884-1487...    57   3e-09
Medtr5g034360.2 | transmembrane protein, putative | HC | chr5:14...    55   1e-08
Medtr5g034360.1 | transmembrane protein, putative | HC | chr5:14...    46   7e-06

>Medtr5g034340.1 | hypothetical protein | HC |
           chr5:14872884-14873294 | 20130731
          Length = 109

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 3   VAAKCARKTLQQASSSTKTLXXXXXXXXXXXXXXXXXTKFNGSPSSSSQFATHKRPLSCP 62
           +A+ CARK+L  ASSS KTL                  KFN S   + Q +  KR  S  
Sbjct: 1   MASNCARKSLGIASSSAKTLFSRRSPSSSSANA----NKFNAS---AFQASPQKRSYS-- 51

Query: 63  WFPVQLAGAQVSLTPXXXXXXXXXXXXXXXXXNTNWGCLSEGFATP 108
           W PVQLAG QVSLTP                 N  WG LSEG   P
Sbjct: 52  WLPVQLAGTQVSLTPLHSVTASALFTSLLSLHNNTWGVLSEGIFIP 97


>Medtr5g034360.2 | transmembrane protein, putative | HC |
           chr5:14891342-14894819 | 20130731
          Length = 105

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 3   VAAKCARKTLQQASSSTKTLXXXXXXXXXXXXXXXXXTKFNGSPSSSSQFATHKRPLSCP 62
           +A+ C+RK  Q ASSS+KTL                      S SSS Q +  KR LS  
Sbjct: 1   MASNCSRKCFQIASSSSKTLLSRRSSSSSNSCKFNSSAS---SSSSSFQASPQKRLLSYS 57

Query: 63  W-FPVQLAGAQVSLTPXXXXXXXXXXXXXXXXXNTNWGCLSEGFATPL 109
             FPVQLAG QVSLTP                 N  WG LSEGFATPL
Sbjct: 58  IRFPVQLAGTQVSLTPLHSVTASALFTSLLSLHNNTWGVLSEGFATPL 105


>Medtr5g034360.1 | transmembrane protein, putative | HC |
           chr5:14891383-14891992 | 20130731
          Length = 135

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 3   VAAKCARKTLQQASSSTKTLXXXXXXXXXXXXXXXXXTKFNGSPSSSSQFATHKRPLSCP 62
           +A+ C+RK  Q ASSS+KTL                      S SSS Q +  KR LS  
Sbjct: 1   MASNCSRKCFQIASSSSKTLLSRRSSSSSNSCKFNSSAS---SSSSSFQASPQKRLLSYS 57

Query: 63  W-FPVQLAGAQVSLTPXXXXXXXXXXXXXXXXXNTNWGCLSEG 104
             FPVQLAG QVSLTP                 N  WG LSEG
Sbjct: 58  IRFPVQLAGTQVSLTPLHSVTASALFTSLLSLHNNTWGVLSEG 100