Miyakogusa Predicted Gene

Lj2g3v1402700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1402700.1 tr|A9U357|A9U357_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_101176,43.48,0.0000003,seg,NULL; DUF936,Protein of
unknown function DUF936, plant; FAMILY NOT NAMED,NULL,CUFF.36965.1
         (418 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g034370.1 | DUF936 family protein | HC | chr5:14898529-149...   450   e-126
Medtr2g099095.1 | DUF936 family protein | HC | chr2:42469319-424...   166   3e-41
Medtr4g068050.1 | DUF936 family protein | HC | chr4:25499155-254...   159   4e-39
Medtr0050s0010.1 | DUF936 family protein | HC | scaffold0050:409...   150   2e-36
Medtr4g112035.1 | DUF936 family protein | HC | chr4:46356557-463...   126   4e-29
Medtr2g062300.1 | DUF936 family protein | HC | chr2:26297458-263...    93   4e-19

>Medtr5g034370.1 | DUF936 family protein | HC |
           chr5:14898529-14901782 | 20130731
          Length = 571

 Score =  450 bits (1157), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/408 (62%), Positives = 276/408 (67%), Gaps = 46/408 (11%)

Query: 1   MATLAPGILMKLLNGLNTGVKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSS 60
           MATLAPGIL+KLLNGLNTGVKPTSEHR+SLLQVTDIVPADLDEKSLFPKQGFYIKVSDSS
Sbjct: 1   MATLAPGILVKLLNGLNTGVKPTSEHRNSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSS 60

Query: 61  HSIYAALPSDQDDIVFSNKMQLGQFIYVDRLEPGSPVPVLKGAKPLPGRHPLVGTPEPLM 120
           HSIY  LPSDQ D V SNKMQLGQFIYVDRLEPGSPVPVLKGAKPLPGRHP +GTPEPLM
Sbjct: 61  HSIYVTLPSDQHDFVLSNKMQLGQFIYVDRLEPGSPVPVLKGAKPLPGRHPFIGTPEPLM 120

Query: 121 GLRDKKEAXXXXXXXXXXXXXXXXXXXXXXSWGTAGKNLDENNVSF-------SSPMVFK 173
           GLR+K +                       SWGT  K  ++++          SSPMVFK
Sbjct: 121 GLREKAQT--------QAQAQTCKPSSVRGSWGTGRKKKNDDDGDGDGGDFFPSSPMVFK 172

Query: 174 PVNLDFDQFSAAAATPVRDRC-AVPSSPLIXXXXXXXXXXXXXXXXCSVGGGLLAKMTDF 232
           PVNLDFDQ      TPVR R      +P+                 CSV GGL  KM D 
Sbjct: 173 PVNLDFDQ-----CTPVRGRSNGGIGTPV----------------RCSVSGGLFGKMNDA 211

Query: 233 KGDSPALLRKSCAVXXXXXXXXXXXXVCERE---PVTPFKSAEKKSCTPPPRLRNARVAF 289
           KG+SP LLRKSCA             V ERE   P +PF+S EK+  TPPPRLR+ARV  
Sbjct: 212 KGESPGLLRKSCAFGSSNGKITRSRSVSERENRIPASPFRSNEKRGGTPPPRLRHARVTT 271

Query: 290 IGG---DAAQNQDSNVPSHPKSLSTTNSAFDNSNNQSLPKNLPGNLSLLGKEAVQQREVA 346
             G      Q +DS+V S  KS STTNSAFD+SNN SLP NLP  L  LGKEAVQQREVA
Sbjct: 272 SVGVIDGVTQKEDSSVTSQQKSHSTTNSAFDDSNNLSLPMNLPARLGSLGKEAVQQREVA 331

Query: 347 QKIALQALRDASATEAVVRSLKMFSNLCKSARACFLSGCHNVWEKPLE 394
           QKIALQALRDASATE VVRSLKMFSNL KSARA   + C   +E+ LE
Sbjct: 332 QKIALQALRDASATETVVRSLKMFSNLAKSARADAPATC---FERFLE 376


>Medtr2g099095.1 | DUF936 family protein | HC |
           chr2:42469319-42464410 | 20130731
          Length = 742

 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 92/120 (76%)

Query: 1   MATLAPGILMKLLNGLNTGVKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSS 60
           MA L PG+L+KLL  +NT VK   EHRSSLLQV  IVPA      LFP QGFY+KVSDSS
Sbjct: 1   MANLVPGVLLKLLQHMNTDVKVGGEHRSSLLQVVSIVPALASGGELFPNQGFYLKVSDSS 60

Query: 61  HSIYAALPSDQDDIVFSNKMQLGQFIYVDRLEPGSPVPVLKGAKPLPGRHPLVGTPEPLM 120
           H+ Y +LP + DD++ S+K+QLGQF++VDR E  SPVPV++G KP+PGRHP VGTPE ++
Sbjct: 61  HATYVSLPDEHDDLILSDKIQLGQFVFVDRFEASSPVPVIRGVKPVPGRHPCVGTPEDIV 120


>Medtr4g068050.1 | DUF936 family protein | HC |
           chr4:25499155-25494660 | 20130731
          Length = 727

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 91/121 (75%), Gaps = 1/121 (0%)

Query: 1   MATLAPGILMKLLNGLNTGVKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSS 60
           MA L PG+L+KL+  +NT +K   EHRSSLLQV  IVPA L    LF  QGFY+KVSDSS
Sbjct: 1   MANLVPGVLLKLMQHMNTDIKVGGEHRSSLLQVVSIVPA-LAGGDLFTNQGFYVKVSDSS 59

Query: 61  HSIYAALPSDQDDIVFSNKMQLGQFIYVDRLEPGSPVPVLKGAKPLPGRHPLVGTPEPLM 120
           H+ Y +LP + DD++ S+K+QLGQF++VDR E  SPVP+L+G +P+PGRH  VGTPE ++
Sbjct: 60  HATYVSLPDEHDDLILSDKIQLGQFVFVDRFEAASPVPILRGVRPVPGRHACVGTPEDIV 119

Query: 121 G 121
            
Sbjct: 120 A 120


>Medtr0050s0010.1 | DUF936 family protein | HC |
           scaffold0050:4093-564 | 20130731
          Length = 533

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 92/128 (71%), Gaps = 1/128 (0%)

Query: 1   MATLAPGILMKLLNGLNTGVKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSS 60
           MA+L PG+L+KLL  +N+ VK   EHRS LLQV  IVPA L    L+P  GF+IKVSDSS
Sbjct: 1   MASLIPGVLLKLLQTMNSNVKVRGEHRSVLLQVISIVPA-LSGSELWPNHGFFIKVSDSS 59

Query: 61  HSIYAALPSDQDDIVFSNKMQLGQFIYVDRLEPGSPVPVLKGAKPLPGRHPLVGTPEPLM 120
           HS Y +L  + ++++ +NK+QLGQF Y+D++E G+PVPVL   +P+PGRHP  G P+ LM
Sbjct: 60  HSTYVSLSKEDNELILNNKLQLGQFFYIDKMEAGTPVPVLVSVRPVPGRHPFEGNPKDLM 119

Query: 121 GLRDKKEA 128
            + +  E+
Sbjct: 120 QMMESSES 127


>Medtr4g112035.1 | DUF936 family protein | HC |
           chr4:46356557-46359609 | 20130731
          Length = 666

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 81/121 (66%), Gaps = 1/121 (0%)

Query: 1   MATLAPGILMKLLNGLNTGVKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSS 60
           MA+L PG+++KLL  +NT  + T +HRS LLQ+  IVPA L    LF  +GFY+ +SDS 
Sbjct: 1   MASLTPGLILKLLQAMNTDTRVTGDHRSPLLQLIGIVPA-LSSSDLFSNEGFYLNLSDSL 59

Query: 61  HSIYAALPSDQDDIVFSNKMQLGQFIYVDRLEPGSPVPVLKGAKPLPGRHPLVGTPEPLM 120
           +S Y  L     D++ +N++QLGQF+YVDR    SP+P +   +PLP RH  VGTPEPL+
Sbjct: 60  NSTYVLLSHPDTDLILNNRLQLGQFLYVDRFHFHSPLPSVTNIRPLPTRHSFVGTPEPLV 119

Query: 121 G 121
            
Sbjct: 120 A 120


>Medtr2g062300.1 | DUF936 family protein | HC |
           chr2:26297458-26302015 | 20130731
          Length = 585

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 7/123 (5%)

Query: 1   MATLAPGILMKLLNGLNTGVKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSS 60
           MA+L PG+L KLL    +    T+ HR  LLQVT+I+P  L E +  P  G+++K+SDS 
Sbjct: 1   MASLTPGVLSKLLQNSTS----TNTHRQPLLQVTEIIPR-LSEDTFQPATGYFLKLSDSL 55

Query: 61  HSIYAALPSDQDDIVFSNKMQLGQFIYVDRL--EPGSPVPVLKGAKPLPGRHPLVGTPEP 118
           HS Y ++     +++ S+K+QLGQF+YV R   +  S VP + G K +  R   VG P  
Sbjct: 56  HSAYVSVSDSDAELIRSDKLQLGQFVYVTRFDNDASSSVPRVSGLKTISKRRACVGNPVD 115

Query: 119 LMG 121
           L+ 
Sbjct: 116 LVS 118