Miyakogusa Predicted Gene

Lj2g3v1391610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1391610.1 tr|C1MSP2|C1MSP2_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_5776,47.42,1e-17,RRM,RNA recognition motif domain;
seg,NULL; no description,Nucleotide-binding, alpha-beta plait;
coi,CUFF.36966.1
         (660 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g034430.1 | RNA recognition motif protein, putative | HC |...   366   e-101
Medtr5g034430.4 | RNA recognition motif protein, putative | HC |...   344   2e-94
Medtr5g034430.3 | RNA recognition motif protein, putative | HC |...   344   2e-94
Medtr5g034430.2 | RNA recognition motif protein, putative | HC |...   344   2e-94

>Medtr5g034430.1 | RNA recognition motif protein, putative | HC |
           chr5:14931357-14939285 | 20130731
          Length = 945

 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/318 (61%), Positives = 226/318 (71%), Gaps = 4/318 (1%)

Query: 122 RAYAPMPNGYAAPPQGTVXXXXXXXXXXXXXXMLRPVYPPRPHGALNVAPVSXXXXXXXX 181
           R +APMPNGYA  PQGT+              M+RPVYPPR  GA+NV PVS        
Sbjct: 143 RPFAPMPNGYAMHPQGTINPAGIPRYPPPYGTMVRPVYPPRLPGAINVLPVSRPPVAGIP 202

Query: 182 XXXXXXXXXXXXXXXXSVTPAEKQQITVYI-RIAPTVENEFVLSLIQLCGNIKSWKRTQY 240
                           SVTPAEKQ  TVYI +IAPTVENEF+LSL++LCGNIKSWKR Q 
Sbjct: 203 SIRPIIPPVVRPVVPPSVTPAEKQHTTVYIGKIAPTVENEFMLSLLKLCGNIKSWKRPQD 262

Query: 241 LSSGTPKSFGFYEFESAEGVLRAMRLLSKLNIDGQELVVNVDEAMKQYLERYVQRKTENS 300
           LSSGTPKSFGFYEF++AEGVLRA+RLL+KLNIDGQELV+NVDEAM+ YLERYVQ+KT+NS
Sbjct: 263 LSSGTPKSFGFYEFDTAEGVLRALRLLTKLNIDGQELVINVDEAMRNYLERYVQKKTDNS 322

Query: 301 IKKEAQTAGDEKDDEGTKPSDATDAAKPDVDPSNKED-NDSGNKESHDVKNFGIVTDEDR 359
            +KE Q A   K D+  K SD  + AKPDV+ SNKE+ NDS NK++HDV  FGIVTDEDR
Sbjct: 323 KEKETQAAEVGK-DQVAKTSDVNEEAKPDVEHSNKEEGNDSVNKKTHDVATFGIVTDEDR 381

Query: 360 EADRDALVKIANMIEERLMTRXXXXXXXXXTVDGSVSSVQEQPAKTRDGESDVDTKKNET 419
           E DRDAL KI  MIEERL +R         T DGSV S  EQP KTR+G+SDVDT KNE+
Sbjct: 382 EVDRDALEKIKQMIEERLNSRPLPPPPPLPTGDGSVDSTSEQPTKTREGDSDVDT-KNES 440

Query: 420 GEDKNDKEANSDNQPTGE 437
           GE+KN++E N D +PT E
Sbjct: 441 GEEKNERETNGDKKPTSE 458



 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 65/107 (60%)

Query: 535 ILYXXXXXXXXSRKRWXXXXXXXXXXXXXXXXXXXXADKQKEEEEIVDAKKRAEEDQRQK 594
           ILY        SRKRW                    ADKQKEEEEI +AKKR EEDQ+ K
Sbjct: 555 ILYDEEDDDGDSRKRWRRNAIEEKRNKRLREKEDDLADKQKEEEEIAEAKKRTEEDQQLK 614

Query: 595 QQRDALKLLSEHVVNSGEETMATEEIAKEVKYIDAEKDTVAHYSREG 641
           +QRDALKLL+EH+VN  +ETMAT EI  E+  I A +DTVA ++ EG
Sbjct: 615 RQRDALKLLTEHIVNGRDETMATREITNEMNNIVAVQDTVADFNHEG 661


>Medtr5g034430.4 | RNA recognition motif protein, putative | HC |
           chr5:14931363-14939314 | 20130731
          Length = 771

 Score =  344 bits (883), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/286 (63%), Positives = 211/286 (73%), Gaps = 4/286 (1%)

Query: 154 MLRPVYPPRPHGALNVAPVSXXXXXXXXXXXXXXXXXXXXXXXXSVTPAEKQQITVYI-R 212
           M+RPVYPPR  GA+NV PVS                        SVTPAEKQ  TVYI +
Sbjct: 1   MVRPVYPPRLPGAINVLPVSRPPVAGIPSIRPIIPPVVRPVVPPSVTPAEKQHTTVYIGK 60

Query: 213 IAPTVENEFVLSLIQLCGNIKSWKRTQYLSSGTPKSFGFYEFESAEGVLRAMRLLSKLNI 272
           IAPTVENEF+LSL++LCGNIKSWKR Q LSSGTPKSFGFYEF++AEGVLRA+RLL+KLNI
Sbjct: 61  IAPTVENEFMLSLLKLCGNIKSWKRPQDLSSGTPKSFGFYEFDTAEGVLRALRLLTKLNI 120

Query: 273 DGQELVVNVDEAMKQYLERYVQRKTENSIKKEAQTAGDEKDDEGTKPSDATDAAKPDVDP 332
           DGQELV+NVDEAM+ YLERYVQ+KT+NS +KE Q A   K D+  K SD  + AKPDV+ 
Sbjct: 121 DGQELVINVDEAMRNYLERYVQKKTDNSKEKETQAAEVGK-DQVAKTSDVNEEAKPDVEH 179

Query: 333 SNKED-NDSGNKESHDVKNFGIVTDEDREADRDALVKIANMIEERLMTRXXXXXXXXXTV 391
           SNKE+ NDS NK++HDV  FGIVTDEDRE DRDAL KI  MIEERL +R         T 
Sbjct: 180 SNKEEGNDSVNKKTHDVATFGIVTDEDREVDRDALEKIKQMIEERLNSRPLPPPPPLPTG 239

Query: 392 DGSVSSVQEQPAKTRDGESDVDTKKNETGEDKNDKEANSDNQPTGE 437
           DGSV S  EQP KTR+G+SDVDT KNE+GE+KN++E N D +PT E
Sbjct: 240 DGSVDSTSEQPTKTREGDSDVDT-KNESGEEKNERETNGDKKPTSE 284



 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 65/107 (60%)

Query: 535 ILYXXXXXXXXSRKRWXXXXXXXXXXXXXXXXXXXXADKQKEEEEIVDAKKRAEEDQRQK 594
           ILY        SRKRW                    ADKQKEEEEI +AKKR EEDQ+ K
Sbjct: 381 ILYDEEDDDGDSRKRWRRNAIEEKRNKRLREKEDDLADKQKEEEEIAEAKKRTEEDQQLK 440

Query: 595 QQRDALKLLSEHVVNSGEETMATEEIAKEVKYIDAEKDTVAHYSREG 641
           +QRDALKLL+EH+VN  +ETMAT EI  E+  I A +DTVA ++ EG
Sbjct: 441 RQRDALKLLTEHIVNGRDETMATREITNEMNNIVAVQDTVADFNHEG 487


>Medtr5g034430.3 | RNA recognition motif protein, putative | HC |
           chr5:14931357-14939390 | 20130731
          Length = 771

 Score =  344 bits (883), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/286 (63%), Positives = 211/286 (73%), Gaps = 4/286 (1%)

Query: 154 MLRPVYPPRPHGALNVAPVSXXXXXXXXXXXXXXXXXXXXXXXXSVTPAEKQQITVYI-R 212
           M+RPVYPPR  GA+NV PVS                        SVTPAEKQ  TVYI +
Sbjct: 1   MVRPVYPPRLPGAINVLPVSRPPVAGIPSIRPIIPPVVRPVVPPSVTPAEKQHTTVYIGK 60

Query: 213 IAPTVENEFVLSLIQLCGNIKSWKRTQYLSSGTPKSFGFYEFESAEGVLRAMRLLSKLNI 272
           IAPTVENEF+LSL++LCGNIKSWKR Q LSSGTPKSFGFYEF++AEGVLRA+RLL+KLNI
Sbjct: 61  IAPTVENEFMLSLLKLCGNIKSWKRPQDLSSGTPKSFGFYEFDTAEGVLRALRLLTKLNI 120

Query: 273 DGQELVVNVDEAMKQYLERYVQRKTENSIKKEAQTAGDEKDDEGTKPSDATDAAKPDVDP 332
           DGQELV+NVDEAM+ YLERYVQ+KT+NS +KE Q A   K D+  K SD  + AKPDV+ 
Sbjct: 121 DGQELVINVDEAMRNYLERYVQKKTDNSKEKETQAAEVGK-DQVAKTSDVNEEAKPDVEH 179

Query: 333 SNKED-NDSGNKESHDVKNFGIVTDEDREADRDALVKIANMIEERLMTRXXXXXXXXXTV 391
           SNKE+ NDS NK++HDV  FGIVTDEDRE DRDAL KI  MIEERL +R         T 
Sbjct: 180 SNKEEGNDSVNKKTHDVATFGIVTDEDREVDRDALEKIKQMIEERLNSRPLPPPPPLPTG 239

Query: 392 DGSVSSVQEQPAKTRDGESDVDTKKNETGEDKNDKEANSDNQPTGE 437
           DGSV S  EQP KTR+G+SDVDT KNE+GE+KN++E N D +PT E
Sbjct: 240 DGSVDSTSEQPTKTREGDSDVDT-KNESGEEKNERETNGDKKPTSE 284



 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 65/107 (60%)

Query: 535 ILYXXXXXXXXSRKRWXXXXXXXXXXXXXXXXXXXXADKQKEEEEIVDAKKRAEEDQRQK 594
           ILY        SRKRW                    ADKQKEEEEI +AKKR EEDQ+ K
Sbjct: 381 ILYDEEDDDGDSRKRWRRNAIEEKRNKRLREKEDDLADKQKEEEEIAEAKKRTEEDQQLK 440

Query: 595 QQRDALKLLSEHVVNSGEETMATEEIAKEVKYIDAEKDTVAHYSREG 641
           +QRDALKLL+EH+VN  +ETMAT EI  E+  I A +DTVA ++ EG
Sbjct: 441 RQRDALKLLTEHIVNGRDETMATREITNEMNNIVAVQDTVADFNHEG 487


>Medtr5g034430.2 | RNA recognition motif protein, putative | HC |
           chr5:14931357-14939390 | 20130731
          Length = 771

 Score =  344 bits (883), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/286 (63%), Positives = 211/286 (73%), Gaps = 4/286 (1%)

Query: 154 MLRPVYPPRPHGALNVAPVSXXXXXXXXXXXXXXXXXXXXXXXXSVTPAEKQQITVYI-R 212
           M+RPVYPPR  GA+NV PVS                        SVTPAEKQ  TVYI +
Sbjct: 1   MVRPVYPPRLPGAINVLPVSRPPVAGIPSIRPIIPPVVRPVVPPSVTPAEKQHTTVYIGK 60

Query: 213 IAPTVENEFVLSLIQLCGNIKSWKRTQYLSSGTPKSFGFYEFESAEGVLRAMRLLSKLNI 272
           IAPTVENEF+LSL++LCGNIKSWKR Q LSSGTPKSFGFYEF++AEGVLRA+RLL+KLNI
Sbjct: 61  IAPTVENEFMLSLLKLCGNIKSWKRPQDLSSGTPKSFGFYEFDTAEGVLRALRLLTKLNI 120

Query: 273 DGQELVVNVDEAMKQYLERYVQRKTENSIKKEAQTAGDEKDDEGTKPSDATDAAKPDVDP 332
           DGQELV+NVDEAM+ YLERYVQ+KT+NS +KE Q A   K D+  K SD  + AKPDV+ 
Sbjct: 121 DGQELVINVDEAMRNYLERYVQKKTDNSKEKETQAAEVGK-DQVAKTSDVNEEAKPDVEH 179

Query: 333 SNKED-NDSGNKESHDVKNFGIVTDEDREADRDALVKIANMIEERLMTRXXXXXXXXXTV 391
           SNKE+ NDS NK++HDV  FGIVTDEDRE DRDAL KI  MIEERL +R         T 
Sbjct: 180 SNKEEGNDSVNKKTHDVATFGIVTDEDREVDRDALEKIKQMIEERLNSRPLPPPPPLPTG 239

Query: 392 DGSVSSVQEQPAKTRDGESDVDTKKNETGEDKNDKEANSDNQPTGE 437
           DGSV S  EQP KTR+G+SDVDT KNE+GE+KN++E N D +PT E
Sbjct: 240 DGSVDSTSEQPTKTREGDSDVDT-KNESGEEKNERETNGDKKPTSE 284



 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 65/107 (60%)

Query: 535 ILYXXXXXXXXSRKRWXXXXXXXXXXXXXXXXXXXXADKQKEEEEIVDAKKRAEEDQRQK 594
           ILY        SRKRW                    ADKQKEEEEI +AKKR EEDQ+ K
Sbjct: 381 ILYDEEDDDGDSRKRWRRNAIEEKRNKRLREKEDDLADKQKEEEEIAEAKKRTEEDQQLK 440

Query: 595 QQRDALKLLSEHVVNSGEETMATEEIAKEVKYIDAEKDTVAHYSREG 641
           +QRDALKLL+EH+VN  +ETMAT EI  E+  I A +DTVA ++ EG
Sbjct: 441 RQRDALKLLTEHIVNGRDETMATREITNEMNNIVAVQDTVADFNHEG 487