Miyakogusa Predicted Gene
- Lj2g3v1389280.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1389280.1 tr|A9SGD1|A9SGD1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_212057,44.9,1e-17,no description,Zinc finger,
RING/FYVE/PHD-type; ZF_RING_1,Zinc finger, RING-type, conserved site;
se,NODE_42364_length_1842_cov_34.508144.path2.1
(424 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g058430.1 | E3 ubiquitin-protein ligase PRT1-like protein ... 572 e-163
Medtr4g022320.1 | E3 ubiquitin-protein ligase PRT1-like protein,... 415 e-116
Medtr4g022320.2 | E3 ubiquitin-protein ligase PRT1-like protein,... 355 6e-98
Medtr7g058450.1 | zinc finger, C3HC4 type (RING finger) protein ... 135 8e-32
Medtr3g037230.1 | zinc finger, C3HC4 type (RING finger) protein ... 54 2e-07
Medtr3g037230.2 | zinc finger, C3HC4 type (RING finger) protein ... 54 2e-07
Medtr3g037230.3 | zinc finger, C3HC4 type (RING finger) protein ... 54 2e-07
Medtr4g088870.1 | E3 ubiquitin-protein ligase RMA1H1-like protei... 51 2e-06
Medtr7g093390.2 | zinc finger, C3HC4 type (RING finger) protein ... 49 7e-06
Medtr7g093390.3 | zinc finger, C3HC4 type (RING finger) protein ... 49 7e-06
Medtr7g093390.1 | zinc finger, C3HC4 type (RING finger) protein ... 49 7e-06
Medtr7g093390.4 | zinc finger, C3HC4 type (RING finger) protein ... 49 7e-06
>Medtr7g058430.1 | E3 ubiquitin-protein ligase PRT1-like protein |
HC | chr7:21035981-21029441 | 20130731
Length = 410
Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/423 (69%), Positives = 334/423 (78%), Gaps = 14/423 (3%)
Query: 1 MENSEFKDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQC 60
MEN+ K+ D E PDSFCC VCLDLLYKPIVLSCGHMCCFWC++KSM+ +RES+C
Sbjct: 1 MENTALKNLDHDEHEEEIPDSFCCCVCLDLLYKPIVLSCGHMCCFWCIHKSMSGVRESKC 60
Query: 61 PICRHQYYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSPEFDPDTCESQAK 120
P CRHQYYHFPTVCQ+LHFLLLK+YPVAY RR NQTLEEEKKSG+YSP+FD DTCESQAK
Sbjct: 61 PTCRHQYYHFPTVCQLLHFLLLKLYPVAYNRRTNQTLEEEKKSGYYSPQFDFDTCESQAK 120
Query: 121 FGHXXXXXXXXITHLVPSLCNVGTSEGMEQSKSTNHEGDDGTIHSKRSSIGEAEIIGTPI 180
FGH +LV + NVGTSE M+Q ST+HEG E EI GT +
Sbjct: 121 FGHSCSPSSSSTINLVSNSSNVGTSECMDQPGSTSHEG-------------EPEITGTRV 167
Query: 181 KGQKSSQDELCPPQKLSVADVMCIMCKQLLCQPVVLNCGHVYCETCVIKLADEMLRCQVC 240
+ + D L QK+SVADVMC MCKQLL PVVL+CGHVYCETCV KLADEMLRCQVC
Sbjct: 168 EEKALPLDNL-TQQKISVADVMCTMCKQLLFHPVVLHCGHVYCETCVYKLADEMLRCQVC 226
Query: 241 QSPHPRGFPKVCLEFDQFLEEQFPEEYKWRRDAIELRQIKVKPETPSSCSSNNHNKGEKI 300
Q PHPRGFPKVCLEFD FLEEQFPEEY R DAIEL+ +K+KP+T SSC +N N+GE +
Sbjct: 227 QIPHPRGFPKVCLEFDHFLEEQFPEEYAQRTDAIELKDVKLKPKTSSSCLLDNGNQGENM 286
Query: 301 EFWSDPESKVHIGVGCDFCGMYPIIGDRYKCEDCKEKMGFDLCGDCYDTRSKLPGRFNQQ 360
E+ SDP+SK H GVGCDFCG+ PIIG+RYKC DCKEK+GFDLCGDCYD+RSKLPGRFNQQ
Sbjct: 287 EWLSDPDSKAHFGVGCDFCGVLPIIGNRYKCNDCKEKIGFDLCGDCYDSRSKLPGRFNQQ 346
Query: 361 HTSEHRFKLVQPNVIRNIMLRLVTGQLGDSSIVNESLENLEFPSEASGLFDDGEDNQNDP 420
HTS+H FKLV+P+ RNIMLRL+TGQLGD S +SL N+EF +EA GLFD G DNQN+P
Sbjct: 347 HTSDHSFKLVEPDPRRNIMLRLITGQLGDRSFNIQSLGNIEFTAEALGLFDGGVDNQNEP 406
Query: 421 EAT 423
+AT
Sbjct: 407 DAT 409
>Medtr4g022320.1 | E3 ubiquitin-protein ligase PRT1-like protein,
putative | HC | chr4:7389370-7382599 | 20130731
Length = 379
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/373 (58%), Positives = 252/373 (67%), Gaps = 29/373 (7%)
Query: 2 ENSEFKDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCP 61
EN+ FKDE E +SF C VCLDLLYKPIVLSCGH+ CFWCV+KSMN RES CP
Sbjct: 4 ENNVFKDE----QEQEINESFVCCVCLDLLYKPIVLSCGHISCFWCVHKSMNASRESHCP 59
Query: 62 ICRHQYYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSPEFDPDTCESQAKF 121
CRH YYHFPT+C+M HFLLLK YP AY RR NQTLEEEK++G SP+ C+
Sbjct: 60 TCRHPYYHFPTICEMFHFLLLKTYPEAYKRRENQTLEEEKETGHSSPQV---ICDPPGD- 115
Query: 122 GHXXXXXXXXITHLVPSLCNVGTS---EGMEQSKSTNHEGDDGTIHSKRSSIGEAEIIGT 178
+ N G++ E MEQS S NH+GD+G I S I+
Sbjct: 116 --------SLTGTTINQTSNSGSTLSFESMEQSGSANHKGDEGIILEYSSDRKHGTIL-- 165
Query: 179 PIKGQKSSQDELCPPQKLSVADVMCIMCKQLLCQPVVLNCGHVYCETCVIKLADEMLRCQ 238
P G K+ VAD+MC CKQLL PV LNCGHVYCETC+ L+ EM RCQ
Sbjct: 166 PQNGHIQQ-------PKILVADLMCPTCKQLLIHPVALNCGHVYCETCITDLSHEMFRCQ 218
Query: 239 VCQSPHPRGFPKVCLEFDQFLEEQFPEEYKWRRDAIELRQIKVKPETPSSCSSNNHNKGE 298
VCQSPHP GFPKVCL DQ+LEEQFPEEY RRDAI+L QIKV+PET SSCS + N+ E
Sbjct: 219 VCQSPHPEGFPKVCLALDQYLEEQFPEEYTQRRDAIQLGQIKVQPETTSSCSLSTDNR-E 277
Query: 299 KIEFWSDPESKVHIGVGCDFCGMYPIIGDRYKCEDCKEKMGFDLCGDCYDTRSKLPGRFN 358
+I + S+PE +H GVGCDFCG+YPIIGDRYKC DC+E +GFDLCGDCY+ RSK PGRFN
Sbjct: 278 RIAWGSNPELLIHPGVGCDFCGLYPIIGDRYKCVDCEESIGFDLCGDCYNKRSKRPGRFN 337
Query: 359 QQHTSEHRFKLVQ 371
Q+HT +H LVQ
Sbjct: 338 QKHTLDHTLMLVQ 350
>Medtr4g022320.2 | E3 ubiquitin-protein ligase PRT1-like protein,
putative | HC | chr4:7388297-7382620 | 20130731
Length = 330
Score = 355 bits (910), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 184/323 (56%), Positives = 215/323 (66%), Gaps = 25/323 (7%)
Query: 52 MNCLRESQCPICRHQYYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSPEFD 111
MN RES CP CRH YYHFPT+C+M HFLLLK YP AY RR NQTLEEEK++G SP+
Sbjct: 1 MNASRESHCPTCRHPYYHFPTICEMFHFLLLKTYPEAYKRRENQTLEEEKETGHSSPQV- 59
Query: 112 PDTCESQAKFGHXXXXXXXXITHLVPSLCNVGTS---EGMEQSKSTNHEGDDGTIHSKRS 168
C+ + N G++ E MEQS S NH+GD+G I S
Sbjct: 60 --ICDPPGD---------SLTGTTINQTSNSGSTLSFESMEQSGSANHKGDEGIILEYSS 108
Query: 169 SIGEAEIIGTPIKGQKSSQDELCPPQKLSVADVMCIMCKQLLCQPVVLNCGHVYCETCVI 228
I+ P G K+ VAD+MC CKQLL PV LNCGHVYCETC+
Sbjct: 109 DRKHGTIL--PQNGHIQQ-------PKILVADLMCPTCKQLLIHPVALNCGHVYCETCIT 159
Query: 229 KLADEMLRCQVCQSPHPRGFPKVCLEFDQFLEEQFPEEYKWRRDAIELRQIKVKPETPSS 288
L+ EM RCQVCQSPHP GFPKVCL DQ+LEEQFPEEY RRDAI+L QIKV+PET SS
Sbjct: 160 DLSHEMFRCQVCQSPHPEGFPKVCLALDQYLEEQFPEEYTQRRDAIQLGQIKVQPETTSS 219
Query: 289 CSSNNHNKGEKIEFWSDPESKVHIGVGCDFCGMYPIIGDRYKCEDCKEKMGFDLCGDCYD 348
CS + N+ E+I + S+PE +H GVGCDFCG+YPIIGDRYKC DC+E +GFDLCGDCY+
Sbjct: 220 CSLSTDNR-ERIAWGSNPELLIHPGVGCDFCGLYPIIGDRYKCVDCEESIGFDLCGDCYN 278
Query: 349 TRSKLPGRFNQQHTSEHRFKLVQ 371
RSK PGRFNQ+HT +H LVQ
Sbjct: 279 KRSKRPGRFNQKHTLDHTLMLVQ 301
>Medtr7g058450.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:21051032-21046629 | 20130731
Length = 100
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/97 (73%), Positives = 80/97 (82%)
Query: 1 MENSEFKDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQC 60
MEN+ K D E PDSFCC VCLDL YKPIVLSCG+MCCFWC++KSM+ +RES+C
Sbjct: 1 MENTTLKHVDHDEHEEEIPDSFCCCVCLDLFYKPIVLSCGYMCCFWCIHKSMSGVRESKC 60
Query: 61 PICRHQYYHFPTVCQMLHFLLLKVYPVAYTRRINQTL 97
P CRHQYYHFPTVCQ+LHFLLLK+YPVAY RR NQTL
Sbjct: 61 PTCRHQYYHFPTVCQLLHFLLLKLYPVAYNRRTNQTL 97
>Medtr3g037230.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:13637290-13627006 | 20130731
Length = 480
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 17 ETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQM 76
E D F C++CL LLY+P+ CGH C C+++SM+ R ++CP+CR P C +
Sbjct: 183 ERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMD--RGNRCPLCRTVLLISPRTCSI 240
Query: 77 ---LHFLLLKVYPVAYTRR 92
L ++ K + Y R
Sbjct: 241 SVTLKSIIQKNFSEEYAER 259
>Medtr3g037230.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:13636031-13627006 | 20130731
Length = 433
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 17 ETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQM 76
E D F C++CL LLY+P+ CGH C C+++SM+ R ++CP+CR P C +
Sbjct: 136 ERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMD--RGNRCPLCRTVLLISPRTCSI 193
Query: 77 ---LHFLLLKVYPVAYTRR 92
L ++ K + Y R
Sbjct: 194 SVTLKSIIQKNFSEEYAER 212
>Medtr3g037230.3 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:13635998-13627006 | 20130731
Length = 433
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 17 ETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQM 76
E D F C++CL LLY+P+ CGH C C+++SM+ R ++CP+CR P C +
Sbjct: 136 ERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMD--RGNRCPLCRTVLLISPRTCSI 193
Query: 77 ---LHFLLLKVYPVAYTRR 92
L ++ K + Y R
Sbjct: 194 SVTLKSIIQKNFSEEYAER 212
>Medtr4g088870.1 | E3 ubiquitin-protein ligase RMA1H1-like protein
| HC | chr4:35466967-35468099 | 20130731
Length = 199
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 3 NSEFK---DEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRES- 58
N E+K + + + + + F C +CLD ++P+V CGH+ C+ C+YK + R S
Sbjct: 10 NQEWKADGNSVTETEKENIDNCFDCHICLDFAHEPVVTLCGHLFCWSCIYKWLFVQRASL 69
Query: 59 ------QCPICRHQYYH 69
QCP+C+H H
Sbjct: 70 APDEHPQCPVCKHDISH 86
>Medtr7g093390.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:37118841-37122307 | 20130731
Length = 453
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 7 KDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRES-QCPICRH 65
KD++ G+ D F C++CLDL +P++ CGH+ C+ C+Y+ ++ ++ +CP+C+
Sbjct: 156 KDDVEKAGGGDG-DFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKG 214
Query: 66 Q---------YYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSP 108
+ Y + + LK+ P +R+ + +++ F P
Sbjct: 215 EVTIKSVTPIYGRGNSTRVLEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFP 266
>Medtr7g093390.3 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:37118841-37121989 | 20130731
Length = 453
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 7 KDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRES-QCPICRH 65
KD++ G+ D F C++CLDL +P++ CGH+ C+ C+Y+ ++ ++ +CP+C+
Sbjct: 156 KDDVEKAGGGDG-DFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKG 214
Query: 66 Q---------YYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSP 108
+ Y + + LK+ P +R+ + +++ F P
Sbjct: 215 EVTIKSVTPIYGRGNSTRVLEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFP 266
>Medtr7g093390.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:37118817-37121936 | 20130731
Length = 453
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 7 KDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRES-QCPICRH 65
KD++ G+ D F C++CLDL +P++ CGH+ C+ C+Y+ ++ ++ +CP+C+
Sbjct: 156 KDDVEKAGGGDG-DFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKG 214
Query: 66 Q---------YYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSP 108
+ Y + + LK+ P +R+ + +++ F P
Sbjct: 215 EVTIKSVTPIYGRGNSTRVLEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFP 266
>Medtr7g093390.4 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:37118817-37122307 | 20130731
Length = 453
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 7 KDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRES-QCPICRH 65
KD++ G+ D F C++CLDL +P++ CGH+ C+ C+Y+ ++ ++ +CP+C+
Sbjct: 156 KDDVEKAGGGDG-DFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKG 214
Query: 66 Q---------YYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSP 108
+ Y + + LK+ P +R+ + +++ F P
Sbjct: 215 EVTIKSVTPIYGRGNSTRVLEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFP 266